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Tan0006240 (gene) of Snake gourd v1 genome

Gene IDTan0006240
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionGag/pol protein
Genome locationLG07:31062824..31064671
RNA-Seq ExpressionTan0006240
SyntenyTan0006240
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041127.1 gag/pol protein [Cucumis melo var. makuwa]1.4e-3067.5Show/hide
Query:  MTDVFTKKYESLGTAKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEVTSVREHVLDMMVHFNIAEVNGGAIDEANQLQRFQTLTKAKEKEVEANVG--
        M+DV  KK+ESL TAK IMDSLK +FGQP   L HEAIKYIY K+MKE TSVREHVLDMM+HFNIAE+NGG IDEAN  QRFQ LTK K KEVEANV   
Subjt:  MTDVFTKKYESLGTAKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEVTSVREHVLDMMVHFNIAEVNGGAIDEANQLQRFQTLTKAKEKEVEANVG--

Query:  KKSFPFGQSQTLTFPSQKVN
        K+ F  G S      S K N
Subjt:  KKSFPFGQSQTLTFPSQKVN

KAA0042331.1 gag/pol protein [Cucumis melo var. makuwa]1.4e-3066.67Show/hide
Query:  MTDVFTKKYESLGTAKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEVTSVREHVLDMMVHFNIAEVNGGAIDEANQLQRFQTLTKAKEKEVEANVG--
        M+DV  KK+ESL T K IMDSLK MFGQP   LRHEAIKYIY KRMKE TS++EHVLDMM+HFNIAEVNGGAID ANQ   FQ LTK K KEVEANV   
Subjt:  MTDVFTKKYESLGTAKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEVTSVREHVLDMMVHFNIAEVNGGAIDEANQLQRFQTLTKAKEKEVEANVG--

Query:  KKSFPFGQSQTLTFPSQKVN
        K+ F  G S        K N
Subjt:  KKSFPFGQSQTLTFPSQKVN

KAA0047422.1 gag/pol protein [Cucumis melo var. makuwa]3.6e-3174.31Show/hide
Query:  MTDVFTKKYESLGTAKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEVTSVREHVLDMMVHFNIAEVNGGAIDEANQLQRFQTLTKAKEKEVEANVG--
        M+DV  KK+ESL TAK IMDSLK MFGQP   LRHEAIKYIY K MKE TSVREHVLDMM+HFNIAEVN GAIDEAN  QRFQ LTK K+KEVEANV   
Subjt:  MTDVFTKKYESLGTAKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEVTSVREHVLDMMVHFNIAEVNGGAIDEANQLQRFQTLTKAKEKEVEANVG--

Query:  KKSFPFGQS
        K+ F  G S
Subjt:  KKSFPFGQS

TYJ98401.1 gag/pol protein [Cucumis melo var. makuwa]6.1e-3179.38Show/hide
Query:  MTDVFTKKYESLGTAKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEVTSVREHVLDMMVHFNIAEVNGGAIDEANQLQRFQTLTKAKEKEVEANV
        M+DV  KK+ESL TAK IMDSLK MFGQP   LRHE IKYIY KRMKE TSVREHVL+MM+HFNIAEVNGGAIDEAN  QRFQ LTK K KEVEANV
Subjt:  MTDVFTKKYESLGTAKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEVTSVREHVLDMMVHFNIAEVNGGAIDEANQLQRFQTLTKAKEKEVEANV

TYK27705.1 gag/pol protein [Cucumis melo var. makuwa]4.0e-3066.1Show/hide
Query:  MTDVFTKKYESLGTAKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEVTSVREHVLDMMVHFNIAEVNGGAIDEANQLQRFQTLTKAKEKEVEANV---
        M+DV  KK++SL TAK IMDSLKEMFGQPS  LRHEAIKYIY  +MKE TSVREH+LD M+HFNIAEVN G I+EANQL RFQ LT  K KEVE NV   
Subjt:  MTDVFTKKYESLGTAKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEVTSVREHVLDMMVHFNIAEVNGGAIDEANQLQRFQTLTKAKEKEVEANV---

Query:  GKKSFPFGQSQTLTFPSQ
         K+      S+T   PSQ
Subjt:  GKKSFPFGQSQTLTFPSQ

TrEMBL top hitse value%identityAlignment
A0A5A7THM4 Gag/pol protein6.6e-3167.5Show/hide
Query:  MTDVFTKKYESLGTAKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEVTSVREHVLDMMVHFNIAEVNGGAIDEANQLQRFQTLTKAKEKEVEANVG--
        M+DV  KK+ESL TAK IMDSLK +FGQP   L HEAIKYIY K+MKE TSVREHVLDMM+HFNIAE+NGG IDEAN  QRFQ LTK K KEVEANV   
Subjt:  MTDVFTKKYESLGTAKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEVTSVREHVLDMMVHFNIAEVNGGAIDEANQLQRFQTLTKAKEKEVEANVG--

Query:  KKSFPFGQSQTLTFPSQKVN
        K+ F  G S      S K N
Subjt:  KKSFPFGQSQTLTFPSQKVN

A0A5D3BI96 Gag/pol protein3.0e-3179.38Show/hide
Query:  MTDVFTKKYESLGTAKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEVTSVREHVLDMMVHFNIAEVNGGAIDEANQLQRFQTLTKAKEKEVEANV
        M+DV  KK+ESL TAK IMDSLK MFGQP   LRHE IKYIY KRMKE TSVREHVL+MM+HFNIAEVNGGAIDEAN  QRFQ LTK K KEVEANV
Subjt:  MTDVFTKKYESLGTAKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEVTSVREHVLDMMVHFNIAEVNGGAIDEANQLQRFQTLTKAKEKEVEANV

A0A5D3BWP2 Gag/pol protein1.7e-3174.31Show/hide
Query:  MTDVFTKKYESLGTAKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEVTSVREHVLDMMVHFNIAEVNGGAIDEANQLQRFQTLTKAKEKEVEANVG--
        M+DV  KK+ESL TAK IMDSLK MFGQP   LRHEAIKYIY K MKE TSVREHVLDMM+HFNIAEVN GAIDEAN  QRFQ LTK K+KEVEANV   
Subjt:  MTDVFTKKYESLGTAKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEVTSVREHVLDMMVHFNIAEVNGGAIDEANQLQRFQTLTKAKEKEVEANVG--

Query:  KKSFPFGQS
        K+ F  G S
Subjt:  KKSFPFGQS

A0A5D3CU35 Gag/pol protein6.6e-3166.67Show/hide
Query:  MTDVFTKKYESLGTAKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEVTSVREHVLDMMVHFNIAEVNGGAIDEANQLQRFQTLTKAKEKEVEANVG--
        M+DV  KK+ESL T K IMDSLK MFGQP   LRHEAIKYIY KRMKE TS++EHVLDMM+HFNIAEVNGGAID ANQ   FQ LTK K KEVEANV   
Subjt:  MTDVFTKKYESLGTAKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEVTSVREHVLDMMVHFNIAEVNGGAIDEANQLQRFQTLTKAKEKEVEANVG--

Query:  KKSFPFGQSQTLTFPSQKVN
        K+ F  G S        K N
Subjt:  KKSFPFGQSQTLTFPSQKVN

A0A5D3DWL6 Gag/pol protein1.9e-3066.1Show/hide
Query:  MTDVFTKKYESLGTAKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEVTSVREHVLDMMVHFNIAEVNGGAIDEANQLQRFQTLTKAKEKEVEANV---
        M+DV  KK++SL TAK IMDSLKEMFGQPS  LRHEAIKYIY  +MKE TSVREH+LD M+HFNIAEVN G I+EANQL RFQ LT  K KEVE NV   
Subjt:  MTDVFTKKYESLGTAKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEVTSVREHVLDMMVHFNIAEVNGGAIDEANQLQRFQTLTKAKEKEVEANV---

Query:  GKKSFPFGQSQTLTFPSQ
         K+      S+T   PSQ
Subjt:  GKKSFPFGQSQTLTFPSQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGATGTATTCACTAAGAAATACGAATCCTTGGGCACAGCTAAGGCTATCATGGATTCGTTAAAAGAGATGTTCGGGCAACCGTCCTCGGTTCTAAGACACGAGGC
TATTAAGTACATTTACAACAAGCGTATGAAGGAAGTGACCTCTGTTAGAGAACATGTCCTGGACATGATGGTCCACTTCAATATTGCTGAAGTAAATGGTGGCGCCATCG
ACGAGGCAAATCAGCTCCAACGTTTTCAAACTCTTACAAAAGCTAAGGAGAAAGAGGTGGAGGCAAATGTTGGTAAAAAGTCTTTTCCATTTGGTCAAAGTCAAACTTTG
ACTTTTCCCAGCCAAAAGGTCAACCTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGACTGATGTATTCACTAAGAAATACGAATCCTTGGGCACAGCTAAGGCTATCATGGATTCGTTAAAAGAGATGTTCGGGCAACCGTCCTCGGTTCTAAGACACGAGGC
TATTAAGTACATTTACAACAAGCGTATGAAGGAAGTGACCTCTGTTAGAGAACATGTCCTGGACATGATGGTCCACTTCAATATTGCTGAAGTAAATGGTGGCGCCATCG
ACGAGGCAAATCAGCTCCAACGTTTTCAAACTCTTACAAAAGCTAAGGAGAAAGAGGTGGAGGCAAATGTTGGTAAAAAGTCTTTTCCATTTGGTCAAAGTCAAACTTTG
ACTTTTCCCAGCCAAAAGGTCAACCTTTGA
Protein sequenceShow/hide protein sequence
MTDVFTKKYESLGTAKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEVTSVREHVLDMMVHFNIAEVNGGAIDEANQLQRFQTLTKAKEKEVEANVGKKSFPFGQSQTL
TFPSQKVNL