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Tan0006270 (gene) of Snake gourd v1 genome

Gene IDTan0006270
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionDNA mismatch repair mutS
Genome locationLG06:78716650..78717298
RNA-Seq ExpressionTan0006270
SyntenyTan0006270
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7013616.1 hypothetical protein SDJN02_23783 [Cucurbita argyrosperma subsp. argyrosperma]2.3e-1377.36Show/hide
Query:  SLTYLVARWKNDKVTVLESEKLAWESSPEAQAIREALNPWRNHDAATEASKDT
        +L +  +R +NDKVTVLESEK+AWE+SPEAQAIREALNPWRNHDAA EA KDT
Subjt:  SLTYLVARWKNDKVTVLESEKLAWESSPEAQAIREALNPWRNHDAATEASKDT

XP_022959449.1 uncharacterized protein LOC111460420 [Cucurbita moschata]7.3e-1290.48Show/hide
Query:  DKVTVLESEKLAWESSPEAQAIREALNPWRNHDAATEASKDT
        DKVTVLESEK+AWE+SPEAQAIREALNPWRNHDAA EA KDT
Subjt:  DKVTVLESEKLAWESSPEAQAIREALNPWRNHDAATEASKDT

XP_023006006.1 uncharacterized protein LOC111498883 [Cucurbita maxima]7.3e-1290.48Show/hide
Query:  DKVTVLESEKLAWESSPEAQAIREALNPWRNHDAATEASKDT
        DKVTVLESEK+AWE+SPEAQAIREALNPWRNHDAA EA KDT
Subjt:  DKVTVLESEKLAWESSPEAQAIREALNPWRNHDAATEASKDT

XP_023548311.1 uncharacterized protein LOC111806987 [Cucurbita pepo subsp. pepo]7.3e-1290.48Show/hide
Query:  DKVTVLESEKLAWESSPEAQAIREALNPWRNHDAATEASKDT
        DKVTVLESEK+AWE+SPEAQAIREALNPWRNHDAA EA KDT
Subjt:  DKVTVLESEKLAWESSPEAQAIREALNPWRNHDAATEASKDT

XP_038906919.1 uncharacterized protein LOC120092786 [Benincasa hispida]6.2e-1190.48Show/hide
Query:  DKVTVLESEKLAWESSPEAQAIREALNPWRNHDAATEASKDT
        DKVTVLESEKLAWE+SPEAQAIREALNPWRN DAA EA KDT
Subjt:  DKVTVLESEKLAWESSPEAQAIREALNPWRNHDAATEASKDT

TrEMBL top hitse value%identityAlignment
A0A0A0K8V0 Uncharacterized protein5.6e-1082.93Show/hide
Query:  DKVTVLESEKLAWESSPEAQAIREALNPWRNHDAATEASKD
        DKV V+ESE+LAWE+SPEAQAIREALNPWRN DAATEA K+
Subjt:  DKVTVLESEKLAWESSPEAQAIREALNPWRNHDAATEASKD

A0A5A7SQJ1 Uncharacterized protein9.6e-1082.93Show/hide
Query:  DKVTVLESEKLAWESSPEAQAIREALNPWRNHDAATEASKD
        DKVTV+ESE+LAWE+SPEAQAIREALNPWRN DAA EA +D
Subjt:  DKVTVLESEKLAWESSPEAQAIREALNPWRNHDAATEASKD

A0A6J1CA87 uncharacterized protein LOC1110097361.5e-1085.37Show/hide
Query:  DKVTVLESEKLAWESSPEAQAIREALNPWRNHDAATEASKD
        DKVTVLESEKLAWE+SPEAQA+REALNPWRN DA  EA KD
Subjt:  DKVTVLESEKLAWESSPEAQAIREALNPWRNHDAATEASKD

A0A6J1H837 uncharacterized protein LOC1114604203.5e-1290.48Show/hide
Query:  DKVTVLESEKLAWESSPEAQAIREALNPWRNHDAATEASKDT
        DKVTVLESEK+AWE+SPEAQAIREALNPWRNHDAA EA KDT
Subjt:  DKVTVLESEKLAWESSPEAQAIREALNPWRNHDAATEASKDT

A0A6J1KWK7 uncharacterized protein LOC1114988833.5e-1290.48Show/hide
Query:  DKVTVLESEKLAWESSPEAQAIREALNPWRNHDAATEASKDT
        DKVTVLESEK+AWE+SPEAQAIREALNPWRNHDAA EA KDT
Subjt:  DKVTVLESEKLAWESSPEAQAIREALNPWRNHDAATEASKDT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G62450.1 unknown protein2.1e-0977.78Show/hide
Query:  DKVTVLESEKLAWESSPEAQAIREALNPWRNHDAAT
        DKVTV+E+E+ A E+SPEAQAIREALNPWRN DA T
Subjt:  DKVTVLESEKLAWESSPEAQAIREALNPWRNHDAAT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCATACATCCTTCCAAAACTACAGCCTTACATATCTTGTTGCTAGGTGGAAAAATGATAAAGTAACAGTTTTGGAATCGGAGAAGCTGGCTTGGGAGAGCTCGCCTGA
GGCTCAAGCAATTAGAGAAGCCCTCAATCCTTGGAGAAATCACGATGCTGCTACAGAGGCCAGCAAAGACACCTAA
mRNA sequenceShow/hide mRNA sequence
ATGCATACATCCTTCCAAAACTACAGCCTTACATATCTTGTTGCTAGGTGGAAAAATGATAAAGTAACAGTTTTGGAATCGGAGAAGCTGGCTTGGGAGAGCTCGCCTGA
GGCTCAAGCAATTAGAGAAGCCCTCAATCCTTGGAGAAATCACGATGCTGCTACAGAGGCCAGCAAAGACACCTAA
Protein sequenceShow/hide protein sequence
MHTSFQNYSLTYLVARWKNDKVTVLESEKLAWESSPEAQAIREALNPWRNHDAATEASKDT