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Tan0006287 (gene) of Snake gourd v1 genome

Gene IDTan0006287
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationLG09:2637208..2671681
RNA-Seq ExpressionTan0006287
SyntenyTan0006287
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]1.9e-0842.99Show/hide
Query:  MTETLSPRLYGTVCTQ-----------------EEIELPVPDNLPYIVCLSGITGS-----------------IDIVRKVNDVCWLHAIFRAKLVGSSGG
        MTE LSPRLYGTVCTQ                  EIELPVPD LP     S    S                   IVR+ +DVCWLHA+FRAK  G  GG
Subjt:  MTETLSPRLYGTVCTQ-----------------EEIELPVPDNLPYIVCLSGITGS-----------------IDIVRKVNDVCWLHAIFRAKLVGSSGG

Query:  EIHGVPT
         +   PT
Subjt:  EIHGVPT

TYK00848.1 gag/pol protein [Cucumis melo var. makuwa]1.3e-0647.67Show/hide
Query:  MTETLSPRLYGTVCTQ-----------------EEIELPVPDNLPYIV-CLSGITGSIDIVRKVNDVCWLHAIFRAKLVGSSGGEI
        MTE LS RLYG VCTQ                  EIEL VPD LP         + S  IVR  +DVCWLHAIFRAK  G  GG++
Subjt:  MTETLSPRLYGTVCTQ-----------------EEIELPVPDNLPYIV-CLSGITGSIDIVRKVNDVCWLHAIFRAKLVGSSGGEI

TYK06355.1 uncharacterized protein E5676_scaffold163G00340 [Cucumis melo var. makuwa]1.6e-0748.28Show/hide
Query:  MTETLSPRLYGTVCTQ-----------------EEIELPVPDNLP--YIVCLSGITGSIDIVRKVNDVCWLHAIFRAKLVGSSGGEI
        MTE LS  LYGTVCTQ                  EIELPVPD LP   +   + I GS  IVR+ N VCWL A+FRAK  G  GG +
Subjt:  MTETLSPRLYGTVCTQ-----------------EEIELPVPDNLP--YIVCLSGITGSIDIVRKVNDVCWLHAIFRAKLVGSSGGEI

TYK14494.1 uncharacterized protein E5676_scaffold15G00050 [Cucumis melo var. makuwa]1.7e-0646.51Show/hide
Query:  MTETLSPRLYGTVCTQ-----------------EEIELPVPDNLPYIVCLS-GITGSIDIVRKVNDVCWLHAIFRAKLVGSSGGEI
        MTE LS RLYGTVCTQ                  EIELPV D LP     S   + S  IVR+ +DVCWLH++FRAK     GG +
Subjt:  MTETLSPRLYGTVCTQ-----------------EEIELPVPDNLPYIVCLS-GITGSIDIVRKVNDVCWLHAIFRAKLVGSSGGEI

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]1.9e-0842.99Show/hide
Query:  MTETLSPRLYGTVCTQ-----------------EEIELPVPDNLPYIVCLSGITGS-----------------IDIVRKVNDVCWLHAIFRAKLVGSSGG
        MTE LSPRLYGTVCTQ                  EIELPVPD LP     S    S                   IVR+ +DVCWLHA+FRAK  G  GG
Subjt:  MTETLSPRLYGTVCTQ-----------------EEIELPVPDNLPYIVCLSGITGS-----------------IDIVRKVNDVCWLHAIFRAKLVGSSGG

Query:  EIHGVPT
         +   PT
Subjt:  EIHGVPT

TrEMBL top hitse value%identityAlignment
A0A5A7VMG9 Reverse transcriptase9.0e-0942.99Show/hide
Query:  MTETLSPRLYGTVCTQ-----------------EEIELPVPDNLPYIVCLSGITGS-----------------IDIVRKVNDVCWLHAIFRAKLVGSSGG
        MTE LSPRLYGTVCTQ                  EIELPVPD LP     S    S                   IVR+ +DVCWLHA+FRAK  G  GG
Subjt:  MTETLSPRLYGTVCTQ-----------------EEIELPVPDNLPYIVCLSGITGS-----------------IDIVRKVNDVCWLHAIFRAKLVGSSGG

Query:  EIHGVPT
         +   PT
Subjt:  EIHGVPT

A0A5D3BP54 Gag/pol protein6.4e-0747.67Show/hide
Query:  MTETLSPRLYGTVCTQ-----------------EEIELPVPDNLPYIV-CLSGITGSIDIVRKVNDVCWLHAIFRAKLVGSSGGEI
        MTE LS RLYG VCTQ                  EIEL VPD LP         + S  IVR  +DVCWLHAIFRAK  G  GG++
Subjt:  MTETLSPRLYGTVCTQ-----------------EEIELPVPDNLPYIV-CLSGITGSIDIVRKVNDVCWLHAIFRAKLVGSSGGEI

A0A5D3C4P7 Retrotrans_gag domain-containing protein7.6e-0848.28Show/hide
Query:  MTETLSPRLYGTVCTQ-----------------EEIELPVPDNLP--YIVCLSGITGSIDIVRKVNDVCWLHAIFRAKLVGSSGGEI
        MTE LS  LYGTVCTQ                  EIELPVPD LP   +   + I GS  IVR+ N VCWL A+FRAK  G  GG +
Subjt:  MTETLSPRLYGTVCTQ-----------------EEIELPVPDNLP--YIVCLSGITGSIDIVRKVNDVCWLHAIFRAKLVGSSGGEI

A0A5D3CU23 Retrotrans_gag domain-containing protein8.4e-0746.51Show/hide
Query:  MTETLSPRLYGTVCTQ-----------------EEIELPVPDNLPYIVCLS-GITGSIDIVRKVNDVCWLHAIFRAKLVGSSGGEI
        MTE LS RLYGTVCTQ                  EIELPV D LP     S   + S  IVR+ +DVCWLH++FRAK     GG +
Subjt:  MTETLSPRLYGTVCTQ-----------------EEIELPVPDNLPYIVCLS-GITGSIDIVRKVNDVCWLHAIFRAKLVGSSGGEI

A0A5D3DX39 Reverse transcriptase9.0e-0942.99Show/hide
Query:  MTETLSPRLYGTVCTQ-----------------EEIELPVPDNLPYIVCLSGITGS-----------------IDIVRKVNDVCWLHAIFRAKLVGSSGG
        MTE LSPRLYGTVCTQ                  EIELPVPD LP     S    S                   IVR+ +DVCWLHA+FRAK  G  GG
Subjt:  MTETLSPRLYGTVCTQ-----------------EEIELPVPDNLPYIVCLSGITGS-----------------IDIVRKVNDVCWLHAIFRAKLVGSSGG

Query:  EIHGVPT
         +   PT
Subjt:  EIHGVPT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGAGACATTGAGCCCGAGGCTATATGGTACAGTGTGCACACAGGAAGAGATCGAGCTCCCGGTGCCTGATAACCTGCCATATATAGTATGTTTATCAGGTATAAC
AGGGTCAATAGATATCGTTAGAAAGGTAAACGATGTCTGTTGGCTTCACGCCATCTTCCGGGCTAAGTTAGTGGGTAGTTCGGGAGGGGAAATTCACGGTGTTCCGACTC
CCATGATCAGGCCCTCCAAAGGGATTGTCTGGTCCAGGCCAAACTAG
mRNA sequenceShow/hide mRNA sequence
ATGACTGAGACATTGAGCCCGAGGCTATATGGTACAGTGTGCACACAGGAAGAGATCGAGCTCCCGGTGCCTGATAACCTGCCATATATAGTATGTTTATCAGGTATAAC
AGGGTCAATAGATATCGTTAGAAAGGTAAACGATGTCTGTTGGCTTCACGCCATCTTCCGGGCTAAGTTAGTGGGTAGTTCGGGAGGGGAAATTCACGGTGTTCCGACTC
CCATGATCAGGCCCTCCAAAGGGATTGTCTGGTCCAGGCCAAACTAG
Protein sequenceShow/hide protein sequence
MTETLSPRLYGTVCTQEEIELPVPDNLPYIVCLSGITGSIDIVRKVNDVCWLHAIFRAKLVGSSGGEIHGVPTPMIRPSKGIVWSRPN