; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0006307 (gene) of Snake gourd v1 genome

Gene IDTan0006307
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionReverse transcriptase
Genome locationLG07:15737612..15747443
RNA-Seq ExpressionTan0006307
SyntenyTan0006307
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025361.1 uncharacterized protein E6C27_scaffold1204G00450 [Cucumis melo var. makuwa]4.2e-0547Show/hide
Query:  MTEILSSMLYSTVCTQ-----------------VEIELPMSEILSWSAES--SQSLIFCTWVVLYMNYVRVCTRGWSTSIVREVNDVCWLHAIFRAKLAG
        MTEILS  LY TVCTQ                 VEIELP+ + L   AES  S S  F   V+  ++ V   + G ST IVR  +DVCWLHA+FRAK AG
Subjt:  MTEILSSMLYSTVCTQ-----------------VEIELPMSEILSWSAES--SQSLIFCTWVVLYMNYVRVCTRGWSTSIVREVNDVCWLHAIFRAKLAG

KAA0062407.1 uncharacterized protein E6C27_scaffold154G002090 [Cucumis melo var. makuwa]8.2e-0951.02Show/hide
Query:  MTEILSSMLYSTVCTQVEIELPMSEILSWSAESSQSLIFCTWVVLYMNYVRV---C---------------TRGWSTSIVREVNDVCWLHAIFRAKLA
        MTEILS  LY TVCTQV+IELPM + L  SAESS+S  F TW+ LY   V V   C                   ST IVR  +DVCWLHA+FR K A
Subjt:  MTEILSSMLYSTVCTQVEIELPMSEILSWSAESSQSLIFCTWVVLYMNYVRV---C---------------TRGWSTSIVREVNDVCWLHAIFRAKLA

KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]2.5e-1051.02Show/hide
Query:  MTEILSSMLYSTVCTQ-----------------VEIELPMSEILSWSAESSQSLIFCTWVVLYMNYVRVCTRGWSTSIVREVNDVCWLHAIFRAKLAG
        MTEILS  LY TVCTQ                 VEIELP+ + L  SAESS+S    TW+ LY+ +V V    W   IVRE +DVCWLHA+FRAK AG
Subjt:  MTEILSSMLYSTVCTQ-----------------VEIELPMSEILSWSAESSQSLIFCTWVVLYMNYVRVCTRGWSTSIVREVNDVCWLHAIFRAKLAG

TYK05030.1 uncharacterized protein E5676_scaffold143G002850 [Cucumis melo var. makuwa]1.9e-0539.22Show/hide
Query:  MTEILSSMLYSTVCTQ-----------------VEIELPMSEILSWSAESSQSLIFCTWVVLYMNYVRVCTRGWSTSI----VREVNDVCWLHAIFRAKL
        MTEILS  LYSTVCT                  VEIELP+ + L  SAES        W  +   ++  C   ++ S+    +   +DVCWLHA+FRAK+
Subjt:  MTEILSSMLYSTVCTQ-----------------VEIELPMSEILSWSAESSQSLIFCTWVVLYMNYVRVCTRGWSTSI----VREVNDVCWLHAIFRAKL

Query:  AG
        AG
Subjt:  AG

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]2.5e-1051.02Show/hide
Query:  MTEILSSMLYSTVCTQ-----------------VEIELPMSEILSWSAESSQSLIFCTWVVLYMNYVRVCTRGWSTSIVREVNDVCWLHAIFRAKLAG
        MTEILS  LY TVCTQ                 VEIELP+ + L  SAESS+S    TW+ LY+ +V V    W   IVRE +DVCWLHA+FRAK AG
Subjt:  MTEILSSMLYSTVCTQ-----------------VEIELPMSEILSWSAESSQSLIFCTWVVLYMNYVRVCTRGWSTSIVREVNDVCWLHAIFRAKLAG

TrEMBL top hitse value%identityAlignment
A0A5A7V638 Uncharacterized protein3.9e-0951.02Show/hide
Query:  MTEILSSMLYSTVCTQVEIELPMSEILSWSAESSQSLIFCTWVVLYMNYVRV---C---------------TRGWSTSIVREVNDVCWLHAIFRAKLA
        MTEILS  LY TVCTQV+IELPM + L  SAESS+S  F TW+ LY   V V   C                   ST IVR  +DVCWLHA+FR K A
Subjt:  MTEILSSMLYSTVCTQVEIELPMSEILSWSAESSQSLIFCTWVVLYMNYVRV---C---------------TRGWSTSIVREVNDVCWLHAIFRAKLA

A0A5A7VMG9 Reverse transcriptase1.2e-1051.02Show/hide
Query:  MTEILSSMLYSTVCTQ-----------------VEIELPMSEILSWSAESSQSLIFCTWVVLYMNYVRVCTRGWSTSIVREVNDVCWLHAIFRAKLAG
        MTEILS  LY TVCTQ                 VEIELP+ + L  SAESS+S    TW+ LY+ +V V    W   IVRE +DVCWLHA+FRAK AG
Subjt:  MTEILSSMLYSTVCTQ-----------------VEIELPMSEILSWSAESSQSLIFCTWVVLYMNYVRVCTRGWSTSIVREVNDVCWLHAIFRAKLAG

A0A5D3C0X3 Retrotrans_gag domain-containing protein9.1e-0639.22Show/hide
Query:  MTEILSSMLYSTVCTQ-----------------VEIELPMSEILSWSAESSQSLIFCTWVVLYMNYVRVCTRGWSTSI----VREVNDVCWLHAIFRAKL
        MTEILS  LYSTVCT                  VEIELP+ + L  SAES        W  +   ++  C   ++ S+    +   +DVCWLHA+FRAK+
Subjt:  MTEILSSMLYSTVCTQ-----------------VEIELPMSEILSWSAESSQSLIFCTWVVLYMNYVRVCTRGWSTSI----VREVNDVCWLHAIFRAKL

Query:  AG
        AG
Subjt:  AG

A0A5D3DIE3 Retrotrans_gag domain-containing protein2.0e-0547Show/hide
Query:  MTEILSSMLYSTVCTQ-----------------VEIELPMSEILSWSAES--SQSLIFCTWVVLYMNYVRVCTRGWSTSIVREVNDVCWLHAIFRAKLAG
        MTEILS  LY TVCTQ                 VEIELP+ + L   AES  S S  F   V+  ++ V   + G ST IVR  +DVCWLHA+FRAK AG
Subjt:  MTEILSSMLYSTVCTQ-----------------VEIELPMSEILSWSAES--SQSLIFCTWVVLYMNYVRVCTRGWSTSIVREVNDVCWLHAIFRAKLAG

A0A5D3DX39 Reverse transcriptase1.2e-1051.02Show/hide
Query:  MTEILSSMLYSTVCTQ-----------------VEIELPMSEILSWSAESSQSLIFCTWVVLYMNYVRVCTRGWSTSIVREVNDVCWLHAIFRAKLAG
        MTEILS  LY TVCTQ                 VEIELP+ + L  SAESS+S    TW+ LY+ +V V    W   IVRE +DVCWLHA+FRAK AG
Subjt:  MTEILSSMLYSTVCTQ-----------------VEIELPMSEILSWSAESSQSLIFCTWVVLYMNYVRVCTRGWSTSIVREVNDVCWLHAIFRAKLAG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGAGATATTGAGCTCGATGTTGTATAGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGATGTCTGAAATCCTGTCATGGTCTGCTGAAAGCTCCCAGAGTTT
GATATTTTGTACATGGGTGGTATTGTATATGAATTATGTTCGTGTATGCACTAGAGGTTGGTCAACAAGTATCGTTAGAGAGGTAAACGATGTCTGTTGGCTTCACGCCA
TCTTCCGGGCTAAGTTAGCGGGCCACTATTCATCATCTCCTATCTCTCATCTCCAAGTCCCCTCCATGAAAATTTCAACCACGAACCCACCTCCTTTTTCCCTTGTTGCA
CGAACACCCGTTAGCCTAAACGCTTCTCACGAGTCGTCGCCCGACAGCAAAGCACTGATCGAACTCGTCGTCAGTCGGAACTCCTTGGCGCTGCGAATCACTGTTGGAAG
TTGA
mRNA sequenceShow/hide mRNA sequence
ATGACTGAGATATTGAGCTCGATGTTGTATAGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGATGTCTGAAATCCTGTCATGGTCTGCTGAAAGCTCCCAGAGTTT
GATATTTTGTACATGGGTGGTATTGTATATGAATTATGTTCGTGTATGCACTAGAGGTTGGTCAACAAGTATCGTTAGAGAGGTAAACGATGTCTGTTGGCTTCACGCCA
TCTTCCGGGCTAAGTTAGCGGGCCACTATTCATCATCTCCTATCTCTCATCTCCAAGTCCCCTCCATGAAAATTTCAACCACGAACCCACCTCCTTTTTCCCTTGTTGCA
CGAACACCCGTTAGCCTAAACGCTTCTCACGAGTCGTCGCCCGACAGCAAAGCACTGATCGAACTCGTCGTCAGTCGGAACTCCTTGGCGCTGCGAATCACTGTTGGAAG
TTGA
Protein sequenceShow/hide protein sequence
MTEILSSMLYSTVCTQVEIELPMSEILSWSAESSQSLIFCTWVVLYMNYVRVCTRGWSTSIVREVNDVCWLHAIFRAKLAGHYSSSPISHLQVPSMKISTTNPPPFSLVA
RTPVSLNASHESSPDSKALIELVVSRNSLALRITVGS