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Tan0006310 (gene) of Snake gourd v1 genome

Gene IDTan0006310
OrganismTrichosanthes anguina (Snake gourd v1)
Description50S ribosomal protein L18
Genome locationLG10:56234905..56236502
RNA-Seq ExpressionTan0006310
SyntenyTan0006310
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0008097 - 5S rRNA binding (molecular function)
InterPro domainsIPR005484 - Ribosomal protein L18


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6590442.1 hypothetical protein SDJN03_15865, partial [Cucurbita argyrosperma subsp. sororia]1.1e-5097.37Show/hide
Query:  MVIPPPVKPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVK
        MVIPPPV+PPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERL+LKGIPAVCVHLKREQ+YHGKVK
Subjt:  MVIPPPVKPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVK

Query:  AVVDSVREAGIKLL
        AVVDSVREAGIKLL
Subjt:  AVVDSVREAGIKLL

XP_008462699.1 PREDICTED: 50S ribosomal protein L18 [Cucumis melo]7.4e-5095.61Show/hide
Query:  MVIPPPVKPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVK
        MVIPPP+KPPRL QYLKPYVLKMHFTNK+VSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQ+YHGKVK
Subjt:  MVIPPPVKPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVK

Query:  AVVDSVREAGIKLL
        AV+DSVREAGIKLL
Subjt:  AVVDSVREAGIKLL

XP_022961444.1 uncharacterized protein LOC111462025 [Cucurbita moschata]1.5e-5097.37Show/hide
Query:  MVIPPPVKPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVK
        MVIPPPV+PPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERL+LKGIPAVCVHLKREQ+YHGKVK
Subjt:  MVIPPPVKPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVK

Query:  AVVDSVREAGIKLL
        AVVDSVREAGIKLL
Subjt:  AVVDSVREAGIKLL

XP_022968817.1 uncharacterized protein LOC111467940 [Cucurbita maxima]3.3e-5096.49Show/hide
Query:  MVIPPPVKPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVK
        MVIPPPV+PPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEK LRSSMESTRDVAAAAKIGKLLGERL+LKGIPAVCVHLKREQ+YHGKVK
Subjt:  MVIPPPVKPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVK

Query:  AVVDSVREAGIKLL
        AVVDSVREAGIKLL
Subjt:  AVVDSVREAGIKLL

XP_023515963.1 uncharacterized protein LOC111779971 [Cucurbita pepo subsp. pepo]4.3e-5095.61Show/hide
Query:  MVIPPPVKPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVK
        MVIPPPV+PPRLTQYLKPY+LKMHFTNKYVSAQVIHS+TATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERL+LKGIPAVCVHLKREQ+YHGKVK
Subjt:  MVIPPPVKPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVK

Query:  AVVDSVREAGIKLL
        AVVDSVREAGIKLL
Subjt:  AVVDSVREAGIKLL

TrEMBL top hitse value%identityAlignment
A0A0A0L0Z6 Uncharacterized protein4.7e-5095.61Show/hide
Query:  MVIPPPVKPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVK
        MVIPPP+KPPRLTQYLKPYVLKMHFTNK+VSAQVIHSETA VASAASSQEKAL+SSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVK
Subjt:  MVIPPPVKPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVK

Query:  AVVDSVREAGIKLL
        AV+DSVREAGIKLL
Subjt:  AVVDSVREAGIKLL

A0A1S3CHJ0 50S ribosomal protein L183.6e-5095.61Show/hide
Query:  MVIPPPVKPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVK
        MVIPPP+KPPRL QYLKPYVLKMHFTNK+VSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQ+YHGKVK
Subjt:  MVIPPPVKPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVK

Query:  AVVDSVREAGIKLL
        AV+DSVREAGIKLL
Subjt:  AVVDSVREAGIKLL

A0A5D3DYC1 50S ribosomal protein L183.6e-5095.61Show/hide
Query:  MVIPPPVKPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVK
        MVIPPP+KPPRL QYLKPYVLKMHFTNK+VSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQ+YHGKVK
Subjt:  MVIPPPVKPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVK

Query:  AVVDSVREAGIKLL
        AV+DSVREAGIKLL
Subjt:  AVVDSVREAGIKLL

A0A6J1HE21 uncharacterized protein LOC1114620257.2e-5197.37Show/hide
Query:  MVIPPPVKPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVK
        MVIPPPV+PPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERL+LKGIPAVCVHLKREQ+YHGKVK
Subjt:  MVIPPPVKPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVK

Query:  AVVDSVREAGIKLL
        AVVDSVREAGIKLL
Subjt:  AVVDSVREAGIKLL

A0A6J1I0R8 uncharacterized protein LOC1114679401.6e-5096.49Show/hide
Query:  MVIPPPVKPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVK
        MVIPPPV+PPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEK LRSSMESTRDVAAAAKIGKLLGERL+LKGIPAVCVHLKREQ+YHGKVK
Subjt:  MVIPPPVKPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVK

Query:  AVVDSVREAGIKLL
        AVVDSVREAGIKLL
Subjt:  AVVDSVREAGIKLL

SwissProt top hitse value%identityAlignment
A7MWH4 50S ribosomal protein L187.8e-1044.57Show/hide
Query:  LKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVKAVVDSVREAGIK
        L +H T ++V AQVI +  + V +AAS+ EKA+R  ++ T +V AA  +GK + ER L KG+ AV       Q YHG+V A+ +S REAG+K
Subjt:  LKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVKAVVDSVREAGIK

A8IAP8 50S ribosomal protein L182.7e-1044.57Show/hide
Query:  LKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVKAVVDSVREAGIK
        L +H T+K++ AQ+I         AASS EK LRSS+++  DV AA  IGKL+ ER   KG+ AV V  +    YHG+VKA+ +  RE G++
Subjt:  LKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVKAVVDSVREAGIK

B6EPU1 50S ribosomal protein L187.8e-1045.65Show/hide
Query:  LKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVKAVVDSVREAGIK
        L +H T ++  AQVI    + V +AAS+ EKA+R  + +T + AAA  IGKL+ ER + KGI  V       Q YHG+V A+ DS REAG+K
Subjt:  LKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVKAVVDSVREAGIK

B7VLE1 50S ribosomal protein L185.9e-1043.48Show/hide
Query:  LKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVKAVVDSVREAGIK
        L +H T ++V AQVI +  + V +AAS+ EKA+R  +++T +V AA  +GK + ER L KG+ +V       Q YHG+V A+ +S REAG+K
Subjt:  LKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVKAVVDSVREAGIK

P52863 50S ribosomal protein L183.5e-1044.57Show/hide
Query:  LKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVKAVVDSVREAGIK
        L +H T ++V AQVI S  + V +AAS+ EKA+R  +++T +V AA  +GK + ER L KG+  V       Q YHG+V A+ +S REAG+K
Subjt:  LKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVKAVVDSVREAGIK

Arabidopsis top hitse value%identityAlignment
AT3G20230.1 Ribosomal L18p/L5e family protein1.6e-1032.67Show/hide
Query:  RLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVKAVVDSVREAG
        R   Y++P++L + F+ K++ A+V+H  T+ V S A++  + +R+++ S  D  A   IGKL+ ER +   + AV    ++ +R  GK+  V+D+++E G
Subjt:  RLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVKAVVDSVREAG

Query:  I
        I
Subjt:  I

AT3G22450.1 Ribosomal L18p/L5e family protein1.0e-0429.17Show/hide
Query:  PYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVKAVVDSVREAGIKL
        P+ L ++ + + V A VIH  T+ V + A S  K ++  + S R+VAA A +G +L +R L   I  V    ++  +  GK++ V+ ++ + G+ +
Subjt:  PYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVKAVVDSVREAGIKL

AT3G45020.1 Ribosomal L18p/L5e family protein2.6e-0530.63Show/hide
Query:  LKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTR--DVAAAAKIGKLLGERLLLKGIP-----AVCVHLKREQRYHG-----KVKAVV
        LK YVL++  + KY++A V+      + + AS+ E  +++S+E  R  +  AAA +G++L  RL ++G+       +   +K+E    G     KV AV+
Subjt:  LKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTR--DVAAAAKIGKLLGERLLLKGIP-----AVCVHLKREQRYHG-----KVKAVV

Query:  DSVREAGIKLL
        +S+R  G+ L+
Subjt:  DSVREAGIKLL

AT5G27820.1 Ribosomal L18p/L5e family protein8.4e-4478.95Show/hide
Query:  MVIPPPVKPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVK
        MVIPP V+PPRL  YLKPYVLKMHFTNK+V AQVIHS TATVA +ASSQEKALR +M+ TRDVAAA+KIGK+LGERLL+K IPAV + +K+EQRYHGKVK
Subjt:  MVIPPPVKPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVK

Query:  AVVDSVREAGIKLL
        AV+DSVREAG+KLL
Subjt:  AVVDSVREAGIKLL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGATTCCTCCTCCAGTTAAGCCACCAAGATTAACCCAGTATCTAAAGCCATATGTCTTGAAGATGCACTTCACAAACAAATATGTGAGCGCCCAAGTGATCCACTC
TGAAACGGCCACCGTTGCTTCGGCTGCAAGCTCGCAAGAGAAGGCGCTGCGGTCGAGCATGGAGTCTACGAGGGATGTGGCTGCTGCTGCAAAGATTGGGAAATTGTTGG
GAGAGAGGCTTTTGCTTAAGGGAATCCCAGCTGTTTGTGTGCACTTGAAAAGAGAACAGAGATATCATGGTAAGGTCAAAGCTGTTGTTGATTCTGTGAGAGAAGCAGGT
ATTAAGCTGCTTTGA
mRNA sequenceShow/hide mRNA sequence
GAAAAAGACCCACCAAACAAACAAAAACCAATACAATCCATCTTCACGCTTTCTTCTTTCTCTCCTCACGCAGCCGGCGGCCAGATCTTCCTTGCGAACGCTTTCTCCCG
GCGAGTGATGGTCTCCTTCCAACAGTAGCACCGACGAACCCAATCTGCTTTAGTTTGAAGACCCACATATCTATTGAACTCAAATTCGAACACCCACGACCCAATCACTC
CAGATCTGGGAAATCGAACGTATTCGGAGTCAAACCAACGAGAAATTTGGGGCATCTTTGGTAATATTTTTTGTATAATTGAATTTGACTAGCCAAGGGAGATGGTGATT
CCTCCTCCAGTTAAGCCACCAAGATTAACCCAGTATCTAAAGCCATATGTCTTGAAGATGCACTTCACAAACAAATATGTGAGCGCCCAAGTGATCCACTCTGAAACGGC
CACCGTTGCTTCGGCTGCAAGCTCGCAAGAGAAGGCGCTGCGGTCGAGCATGGAGTCTACGAGGGATGTGGCTGCTGCTGCAAAGATTGGGAAATTGTTGGGAGAGAGGC
TTTTGCTTAAGGGAATCCCAGCTGTTTGTGTGCACTTGAAAAGAGAACAGAGATATCATGGTAAGGTCAAAGCTGTTGTTGATTCTGTGAGAGAAGCAGGTATTAAGCTG
CTTTGAATTCTTTTTGTTCTTGTTCAATTTGCTGCATTTTGGCCCTCCTTAAAAATAGTTGCTGCATTTGTTGTTGGCTGAGTTTGGTTTGGTAATTAACCTTTTGATGA
ATTATTGGACTTCTTGTCGTTGTCCTGATGATAAGTGAGTTTGAGATGATTAGTGAGATAGTGTTTTAGGTGAAATTTCATTTCATATGAGTATGTTTGGGAAATAAACC
ATAATTAAGAGGCCAGATATATGTATTAGGAAGTTTCTAATGTTTTTTTTTTCCTTTTCAATTTCGTCCTTATAAATTGGTTGATAATAAACTTCATGACACGATACTTT
GTGAGTCTCTAGAAATTTAGAGAAGAAATTAGGCTTTCTAAGAGAGGAAAAGTTGAAAATTTTGCCAACTTAGAAATTTAGAGGGG
Protein sequenceShow/hide protein sequence
MVIPPPVKPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVKAVVDSVREAG
IKLL