CuGenDBv2

Gene ID	Tan0006335
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Glutamate receptor
Genome location	LG01:569022..571198
RNA-Seq Expression	Tan0006335
Synteny	Tan0006335
Gene Ontology terms	NA
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0026100.1 uncharacterized protein E6C27_scaffold19G00360 [Cucumis melo var. makuwa]

1.3e-67

40.1

Show/hide

Query:  PPGIRDAKYKGVSMGTPTFMNLLNQPTSIKMDRTNFLLWKNIALPLLRSYKLEGHLTGNEPCPEMSIIIPPSE-----DEPQELLMANPES---------
        PP +  A +       P    +LNQ  ++K+DR N+LLWK +ALP+L+ YKLEGHLTG  PCP   ++   S      +E  +  +    S         
Subjt:  PPGIRDAKYKGVSMGTPTFMNLLNQPTSIKMDRTNFLLWKNIALPLLRSYKLEGHLTGNEPCPEMSIIIPPSE-----DEPQELLMANPES---------

Query:  -DLWETTDQLLMGWLYNSMTLDVASQVINCGTAQELWKAFQDLYGIQAVSQKDYLKRLLQQTRKGSMKMIEYLSVMKNFFDNLCLAGSPVDERDLISYVI
         + W TTD LL+GWLYNSMT DVA Q++     ++LW A QD +G+Q+ +++D+L+++LQ TRKG+ KM EYL VMK   DNL   GSPV  R LIS V+
Subjt:  -DLWETTDQLLMGWLYNSMTLDVASQVINCGTAQELWKAFQDLYGIQAVSQKDYLKRLLQQTRKGSMKMIEYLSVMKNFFDNLCLAGSPVDERDLISYVI

Query:  TGLDEEYTPIVVVIQNK-EMSWNQVQSQLLNFENRQELLSAQKGVISINHPTANVVTTQPNLSQNSQPATNAKQNN-----YGHQRSHRGRGRGRYHGGS
         GLDE Y  ++VVIQ K ++SW  +QS+LL FE   +  + QK            +T  P L+   + A N ++N+     YG+ R H    RG  + G 
Subjt:  TGLDEEYTPIVVVIQNK-EMSWNQVQSQLLNFENRQELLSAQKGVISINHPTANVVTTQPNLSQNSQPATNAKQNN-----YGHQRSHRGRGRGRYHGGS

Query:  KPICQLCGKTGHTAVVCYFRYEKNFNPSNTQTKGAPGS---------------SSTLIATPEHVCDSSWYLDSGASGHLTSDLSNLNLKTNYTGQDHGE
         P CQLCGK GH+A+VCY R+ K F+    Q +    S               ++T  ATP+ V D +WY+DSGA+ H+T + SN+   T Y+GQ +GE
Subjt:  KPICQLCGKTGHTAVVCYFRYEKNFNPSNTQTKGAPGS---------------SSTLIATPEHVCDSSWYLDSGASGHLTSDLSNLNLKTNYTGQDHGE

TXG55646.1 hypothetical protein EZV62_020902 [Acer yangbiense]

5.6e-68

40.56

Show/hide

Query:  FMNLLNQPTSIKMDRTNFLLWKNIALPLLRSYKLEGHLTGNEPCPEMSIIIPPSEDEPQELLMANPESDLWETTDQLLMGWLYNSMTLDVASQVINCGTA
        F N LNQ  +IK+DR NF+LWK +   +++ ++L+GHL    PCP   +  P +         +NPE + W   DQLLMGWLY+SMT +VA  V+   TA
Subjt:  FMNLLNQPTSIKMDRTNFLLWKNIALPLLRSYKLEGHLTGNEPCPEMSIIIPPSEDEPQELLMANPESDLWETTDQLLMGWLYNSMTLDVASQVINCGTA

Query:  QELWKAFQDLYGIQAVSQKDYLKRLLQQTRKGSMKMIEYLSVMKNFFDNLCLAGSPVDERDLISYVITGLDEEYTPIVVVIQNKE-MSWNQVQSQLLNFE
          LWKA ++L+G  + S+ + ++  +Q TRKGS  M EYL+ MK + D+L +AG P  E  L + ++ GLD EY PIVV+I+ +E  +W ++   LL+++
Subjt:  QELWKAFQDLYGIQAVSQKDYLKRLLQQTRKGSMKMIEYLSVMKNFFDNLCLAGSPVDERDLISYVITGLDEEYTPIVVVIQNKE-MSWNQVQSQLLNFE

Query:  NRQELLS--AQKGVISINHPTANVVTTQPNLSQNSQPATNAKQNNYGHQRS-HRG---------RGRGRYHGGSKPICQLCGKTGHTAVVCYFRYEKNFN
        ++ E ++  + KG + ++ P+A++ T +PN + N+   +N +  N G  R+ +RG         RGRG  +  S+P CQ+CGK GH+A VCYFRY+ N+ 
Subjt:  NRQELLS--AQKGVISINHPTANVVTTQPNLSQNSQPATNAKQNNYGHQRS-HRG---------RGRGRYHGGSKPICQLCGKTGHTAVVCYFRYEKNFN

Query:  PSNTQTKGAPGSSSTLIATPEHVCDSSWYLDSGASGHLTSDLSNLNLKTNYTGQD
         S         S S  +ATPE V D++WY DSGA+ H+T+D  NL+LK+NY G +
Subjt:  PSNTQTKGAPGSSSTLIATPEHVCDSSWYLDSGASGHLTSDLSNLNLKTNYTGQD

TXG67243.1 hypothetical protein EZV62_008518 [Acer yangbiense]

9.0e-66

39.67

Show/hide

Query:  FMNLLNQPTSIKMDRTNFLLWKNIALPLLRSYKLEGHLTGNEPCPEMSIIIPPSEDEPQELL--------MANPESDLWETTDQLLMGWLYNSMTLDVAS
        F N LNQ  +IK+DR NF+LWK +   +++ ++L+GHL    PCP   +  P +   P             +NPE + W   DQLLMGWLY+SMT +VA 
Subjt:  FMNLLNQPTSIKMDRTNFLLWKNIALPLLRSYKLEGHLTGNEPCPEMSIIIPPSEDEPQELL--------MANPESDLWETTDQLLMGWLYNSMTLDVAS

Query:  QVINCGTAQELWKAFQDLYGIQAVSQKDYLKRLLQQTRKGSMKMIEYLSVMKNFFDNLCLAGSPVDERDLISYVITGLDEEYTPIVVVIQNKE-MSWNQV
         V+   TA  LWKA ++L+G  + S+ + ++  +Q TRKGS  M EYL+ MK + D+L +AG P  E  L +  + GLD EY PIVV+I+ +E  +W ++
Subjt:  QVINCGTAQELWKAFQDLYGIQAVSQKDYLKRLLQQTRKGSMKMIEYLSVMKNFFDNLCLAGSPVDERDLISYVITGLDEEYTPIVVVIQNKE-MSWNQV

Query:  QSQLLNFENRQELLS--AQKGVISINHPTANVVTTQPNLSQNSQPATNAKQNNYGHQRS-HRG---------RGRGRYHGGSKPICQLCGKTGHTAVVCY
           LL+++++ E ++  + KG + ++ P+A++ T +PN + N+   +N +  N G  R+ +RG         RGRG  +  S+P CQ+CGK GH+A VCY
Subjt:  QSQLLNFENRQELLS--AQKGVISINHPTANVVTTQPNLSQNSQPATNAKQNNYGHQRS-HRG---------RGRGRYHGGSKPICQLCGKTGHTAVVCY

Query:  FRYEKNFNPSNTQTKGAPGSSSTLIATPEHVCDSSWYLDSGASGHLTSDLSNLNLKTNYTGQD
        FRY+ N+  S         S S  +ATPE V D++WY DSGA+ H+T+D  NL+LK++Y G +
Subjt:  FRYEKNFNPSNTQTKGAPGSSSTLIATPEHVCDSSWYLDSGASGHLTSDLSNLNLKTNYTGQD

TXG69253.1 hypothetical protein EZV62_004188 [Acer yangbiense]

6.9e-66

39.67

Show/hide

Query:  FMNLLNQPTSIKMDRTNFLLWKNIALPLLRSYKLEGHLTGNEPCPEMSIIIPPSEDEPQELL--------MANPESDLWETTDQLLMGWLYNSMTLDVAS
        F N LNQ  +IK+DR NF+LWK +   +++ ++L+GHL    PCP   +  P +   P             +NPE + W   DQLLMGWLY+SMT +VA 
Subjt:  FMNLLNQPTSIKMDRTNFLLWKNIALPLLRSYKLEGHLTGNEPCPEMSIIIPPSEDEPQELL--------MANPESDLWETTDQLLMGWLYNSMTLDVAS

Query:  QVINCGTAQELWKAFQDLYGIQAVSQKDYLKRLLQQTRKGSMKMIEYLSVMKNFFDNLCLAGSPVDERDLISYVITGLDEEYTPIVVVIQNKE-MSWNQV
         V+   TA  LWKA ++L+G  + S+ + ++  +Q TRKGS  M EYL+ MK + D+L +AG P  E  L +  + GLD EY PIVV+I+ +E  +W ++
Subjt:  QVINCGTAQELWKAFQDLYGIQAVSQKDYLKRLLQQTRKGSMKMIEYLSVMKNFFDNLCLAGSPVDERDLISYVITGLDEEYTPIVVVIQNKE-MSWNQV

Query:  QSQLLNFENRQELLS--AQKGVISINHPTANVVTTQPNLSQNSQPATNAKQNNYGHQRS-HRG---------RGRGRYHGGSKPICQLCGKTGHTAVVCY
           LL+++++ E ++  + KG + ++ P+A++ T +PN + N+   +N +  N G  R+ +RG         RGRG  +  S+P CQ+CGK GH+A VCY
Subjt:  QSQLLNFENRQELLS--AQKGVISINHPTANVVTTQPNLSQNSQPATNAKQNNYGHQRS-HRG---------RGRGRYHGGSKPICQLCGKTGHTAVVCY

Query:  FRYEKNFNPSNTQTKGAPGSSSTLIATPEHVCDSSWYLDSGASGHLTSDLSNLNLKTNYTGQD
        FRY+ N+  S         S S  +ATPE V D++WY DSGA+ H+T+D  NL+LK++Y G +
Subjt:  FRYEKNFNPSNTQTKGAPGSSSTLIATPEHVCDSSWYLDSGASGHLTSDLSNLNLKTNYTGQD

XP_022151683.1 uncharacterized protein LOC111019598 [Momordica charantia]

1.5e-68

42.67

Show/hide

Query:  PVHVLKPPGIRDAKYKGVSMGTPTFMNLLNQPTSIKMDRTNFLLWKNIALPLLRSYKLEGHLTGNEPCPEMSIIIPPS------EDEPQELLMANPESDL
        P  ++ PP +      G    +P    LLNQ TSIKMDR NFLLW+N+ALP+LRSYKL  +LTG++PCP   ++   +          Q     NP  + 
Subjt:  PVHVLKPPGIRDAKYKGVSMGTPTFMNLLNQPTSIKMDRTNFLLWKNIALPLLRSYKLEGHLTGNEPCPEMSIIIPPS------EDEPQELLMANPESDL

Query:  WETTDQLLMGWLYNSMTLDVASQVINCGTAQELWKAFQDLYGIQAVSQKDYLKRLLQQTRKGSMKMIEYLSVMKNFFDNLCLAGSPVDERDLISYVITGL
        W   D+LL+GWLYNSM  DVA QV+   T++ELW A Q+L+G+Q+ ++ DYLK++ QQT KGS++MIEYL +MK+  DNL LAGS V  RDL+S V+TGL
Subjt:  WETTDQLLMGWLYNSMTLDVASQVINCGTAQELWKAFQDLYGIQAVSQKDYLKRLLQQTRKGSMKMIEYLSVMKNFFDNLCLAGSPVDERDLISYVITGL

Query:  DEEYTPIVVVIQNK-EMSWNQVQSQLLNFENRQELLSAQKGVISINHPTANVVTTQPNLSQNSQPATNAKQNNYGHQRSHRGRGRGRYHGGSKPICQLCG
        DEEY PIVV +Q K  +SW+++ ++LL +E R E  ++ K  I IN      V      S  +   TN   N++G   +HRG G  R   G +   +   
Subjt:  DEEYTPIVVVIQNK-EMSWNQVQSQLLNFENRQELLSAQKGVISINHPTANVVTTQPNLSQNSQPATNAKQNNYGHQRSHRGRGRGRYHGGSKPICQLCG

Query:  KTGHTAVVCYFRYEKNFNPSNT-QTKGAPGSSSTLIATPEHVCDSSWYLDSGASGHLTSDLSNLNLKTNYTGQDH
         T H          KNF PSN+     A   +ST + TPE V D SWY DSGA+ H+T++ +N+  K +Y+G ++
Subjt:  KTGHTAVVCYFRYEKNFNPSNT-QTKGAPGSSSTLIATPEHVCDSSWYLDSGASGHLTSDLSNLNLKTNYTGQDH

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SIT7 Uncharacterized protein

6.1e-68

40.1

Show/hide

Query:  PPGIRDAKYKGVSMGTPTFMNLLNQPTSIKMDRTNFLLWKNIALPLLRSYKLEGHLTGNEPCPEMSIIIPPSE-----DEPQELLMANPES---------
        PP +  A +       P    +LNQ  ++K+DR N+LLWK +ALP+L+ YKLEGHLTG  PCP   ++   S      +E  +  +    S         
Subjt:  PPGIRDAKYKGVSMGTPTFMNLLNQPTSIKMDRTNFLLWKNIALPLLRSYKLEGHLTGNEPCPEMSIIIPPSE-----DEPQELLMANPES---------

Query:  -DLWETTDQLLMGWLYNSMTLDVASQVINCGTAQELWKAFQDLYGIQAVSQKDYLKRLLQQTRKGSMKMIEYLSVMKNFFDNLCLAGSPVDERDLISYVI
         + W TTD LL+GWLYNSMT DVA Q++     ++LW A QD +G+Q+ +++D+L+++LQ TRKG+ KM EYL VMK   DNL   GSPV  R LIS V+
Subjt:  -DLWETTDQLLMGWLYNSMTLDVASQVINCGTAQELWKAFQDLYGIQAVSQKDYLKRLLQQTRKGSMKMIEYLSVMKNFFDNLCLAGSPVDERDLISYVI

Query:  TGLDEEYTPIVVVIQNK-EMSWNQVQSQLLNFENRQELLSAQKGVISINHPTANVVTTQPNLSQNSQPATNAKQNN-----YGHQRSHRGRGRGRYHGGS
         GLDE Y  ++VVIQ K ++SW  +QS+LL FE   +  + QK            +T  P L+   + A N ++N+     YG+ R H    RG  + G 
Subjt:  TGLDEEYTPIVVVIQNK-EMSWNQVQSQLLNFENRQELLSAQKGVISINHPTANVVTTQPNLSQNSQPATNAKQNN-----YGHQRSHRGRGRGRYHGGS

Query:  KPICQLCGKTGHTAVVCYFRYEKNFNPSNTQTKGAPGS---------------SSTLIATPEHVCDSSWYLDSGASGHLTSDLSNLNLKTNYTGQDHGE
         P CQLCGK GH+A+VCY R+ K F+    Q +    S               ++T  ATP+ V D +WY+DSGA+ H+T + SN+   T Y+GQ +GE
Subjt:  KPICQLCGKTGHTAVVCYFRYEKNFNPSNTQTKGAPGS---------------SSTLIATPEHVCDSSWYLDSGASGHLTSDLSNLNLKTNYTGQDHGE

A0A5C7HHE9 Uncharacterized protein

2.7e-68

40.56

Show/hide

Query:  FMNLLNQPTSIKMDRTNFLLWKNIALPLLRSYKLEGHLTGNEPCPEMSIIIPPSEDEPQELLMANPESDLWETTDQLLMGWLYNSMTLDVASQVINCGTA
        F N LNQ  +IK+DR NF+LWK +   +++ ++L+GHL    PCP   +  P +         +NPE + W   DQLLMGWLY+SMT +VA  V+   TA
Subjt:  FMNLLNQPTSIKMDRTNFLLWKNIALPLLRSYKLEGHLTGNEPCPEMSIIIPPSEDEPQELLMANPESDLWETTDQLLMGWLYNSMTLDVASQVINCGTA

Query:  QELWKAFQDLYGIQAVSQKDYLKRLLQQTRKGSMKMIEYLSVMKNFFDNLCLAGSPVDERDLISYVITGLDEEYTPIVVVIQNKE-MSWNQVQSQLLNFE
          LWKA ++L+G  + S+ + ++  +Q TRKGS  M EYL+ MK + D+L +AG P  E  L + ++ GLD EY PIVV+I+ +E  +W ++   LL+++
Subjt:  QELWKAFQDLYGIQAVSQKDYLKRLLQQTRKGSMKMIEYLSVMKNFFDNLCLAGSPVDERDLISYVITGLDEEYTPIVVVIQNKE-MSWNQVQSQLLNFE

Query:  NRQELLS--AQKGVISINHPTANVVTTQPNLSQNSQPATNAKQNNYGHQRS-HRG---------RGRGRYHGGSKPICQLCGKTGHTAVVCYFRYEKNFN
        ++ E ++  + KG + ++ P+A++ T +PN + N+   +N +  N G  R+ +RG         RGRG  +  S+P CQ+CGK GH+A VCYFRY+ N+ 
Subjt:  NRQELLS--AQKGVISINHPTANVVTTQPNLSQNSQPATNAKQNNYGHQRS-HRG---------RGRGRYHGGSKPICQLCGKTGHTAVVCYFRYEKNFN

Query:  PSNTQTKGAPGSSSTLIATPEHVCDSSWYLDSGASGHLTSDLSNLNLKTNYTGQD
         S         S S  +ATPE V D++WY DSGA+ H+T+D  NL+LK+NY G +
Subjt:  PSNTQTKGAPGSSSTLIATPEHVCDSSWYLDSGASGHLTSDLSNLNLKTNYTGQD

A0A5C7ID32 Uncharacterized protein

4.4e-66

39.67

Show/hide

Query:  FMNLLNQPTSIKMDRTNFLLWKNIALPLLRSYKLEGHLTGNEPCPEMSIIIPPSEDEPQELL--------MANPESDLWETTDQLLMGWLYNSMTLDVAS
        F N LNQ  +IK+DR NF+LWK +   +++ ++L+GHL    PCP   +  P +   P             +NPE + W   DQLLMGWLY+SMT +VA 
Subjt:  FMNLLNQPTSIKMDRTNFLLWKNIALPLLRSYKLEGHLTGNEPCPEMSIIIPPSEDEPQELL--------MANPESDLWETTDQLLMGWLYNSMTLDVAS

Query:  QVINCGTAQELWKAFQDLYGIQAVSQKDYLKRLLQQTRKGSMKMIEYLSVMKNFFDNLCLAGSPVDERDLISYVITGLDEEYTPIVVVIQNKE-MSWNQV
         V+   TA  LWKA ++L+G  + S+ + ++  +Q TRKGS  M EYL+ MK + D+L +AG P  E  L +  + GLD EY PIVV+I+ +E  +W ++
Subjt:  QVINCGTAQELWKAFQDLYGIQAVSQKDYLKRLLQQTRKGSMKMIEYLSVMKNFFDNLCLAGSPVDERDLISYVITGLDEEYTPIVVVIQNKE-MSWNQV

Query:  QSQLLNFENRQELLS--AQKGVISINHPTANVVTTQPNLSQNSQPATNAKQNNYGHQRS-HRG---------RGRGRYHGGSKPICQLCGKTGHTAVVCY
           LL+++++ E ++  + KG + ++ P+A++ T +PN + N+   +N +  N G  R+ +RG         RGRG  +  S+P CQ+CGK GH+A VCY
Subjt:  QSQLLNFENRQELLS--AQKGVISINHPTANVVTTQPNLSQNSQPATNAKQNNYGHQRS-HRG---------RGRGRYHGGSKPICQLCGKTGHTAVVCY

Query:  FRYEKNFNPSNTQTKGAPGSSSTLIATPEHVCDSSWYLDSGASGHLTSDLSNLNLKTNYTGQD
        FRY+ N+  S         S S  +ATPE V D++WY DSGA+ H+T+D  NL+LK++Y G +
Subjt:  FRYEKNFNPSNTQTKGAPGSSSTLIATPEHVCDSSWYLDSGASGHLTSDLSNLNLKTNYTGQD

A0A5C7IJ06 Uncharacterized protein

3.3e-66

39.67

Show/hide

Query:  FMNLLNQPTSIKMDRTNFLLWKNIALPLLRSYKLEGHLTGNEPCPEMSIIIPPSEDEPQELL--------MANPESDLWETTDQLLMGWLYNSMTLDVAS
        F N LNQ  +IK+DR NF+LWK +   +++ ++L+GHL    PCP   +  P +   P             +NPE + W   DQLLMGWLY+SMT +VA 
Subjt:  FMNLLNQPTSIKMDRTNFLLWKNIALPLLRSYKLEGHLTGNEPCPEMSIIIPPSEDEPQELL--------MANPESDLWETTDQLLMGWLYNSMTLDVAS

Query:  QVINCGTAQELWKAFQDLYGIQAVSQKDYLKRLLQQTRKGSMKMIEYLSVMKNFFDNLCLAGSPVDERDLISYVITGLDEEYTPIVVVIQNKE-MSWNQV
         V+   TA  LWKA ++L+G  + S+ + ++  +Q TRKGS  M EYL+ MK + D+L +AG P  E  L +  + GLD EY PIVV+I+ +E  +W ++
Subjt:  QVINCGTAQELWKAFQDLYGIQAVSQKDYLKRLLQQTRKGSMKMIEYLSVMKNFFDNLCLAGSPVDERDLISYVITGLDEEYTPIVVVIQNKE-MSWNQV

Query:  QSQLLNFENRQELLS--AQKGVISINHPTANVVTTQPNLSQNSQPATNAKQNNYGHQRS-HRG---------RGRGRYHGGSKPICQLCGKTGHTAVVCY
           LL+++++ E ++  + KG + ++ P+A++ T +PN + N+   +N +  N G  R+ +RG         RGRG  +  S+P CQ+CGK GH+A VCY
Subjt:  QSQLLNFENRQELLS--AQKGVISINHPTANVVTTQPNLSQNSQPATNAKQNNYGHQRS-HRG---------RGRGRYHGGSKPICQLCGKTGHTAVVCY

Query:  FRYEKNFNPSNTQTKGAPGSSSTLIATPEHVCDSSWYLDSGASGHLTSDLSNLNLKTNYTGQD
        FRY+ N+  S         S S  +ATPE V D++WY DSGA+ H+T+D  NL+LK++Y G +
Subjt:  FRYEKNFNPSNTQTKGAPGSSSTLIATPEHVCDSSWYLDSGASGHLTSDLSNLNLKTNYTGQD

A0A6J1DCW4 uncharacterized protein LOC111019598

7.2e-69

42.67

Show/hide

Query:  PVHVLKPPGIRDAKYKGVSMGTPTFMNLLNQPTSIKMDRTNFLLWKNIALPLLRSYKLEGHLTGNEPCPEMSIIIPPS------EDEPQELLMANPESDL
        P  ++ PP +      G    +P    LLNQ TSIKMDR NFLLW+N+ALP+LRSYKL  +LTG++PCP   ++   +          Q     NP  + 
Subjt:  PVHVLKPPGIRDAKYKGVSMGTPTFMNLLNQPTSIKMDRTNFLLWKNIALPLLRSYKLEGHLTGNEPCPEMSIIIPPS------EDEPQELLMANPESDL

Query:  WETTDQLLMGWLYNSMTLDVASQVINCGTAQELWKAFQDLYGIQAVSQKDYLKRLLQQTRKGSMKMIEYLSVMKNFFDNLCLAGSPVDERDLISYVITGL
        W   D+LL+GWLYNSM  DVA QV+   T++ELW A Q+L+G+Q+ ++ DYLK++ QQT KGS++MIEYL +MK+  DNL LAGS V  RDL+S V+TGL
Subjt:  WETTDQLLMGWLYNSMTLDVASQVINCGTAQELWKAFQDLYGIQAVSQKDYLKRLLQQTRKGSMKMIEYLSVMKNFFDNLCLAGSPVDERDLISYVITGL

Query:  DEEYTPIVVVIQNK-EMSWNQVQSQLLNFENRQELLSAQKGVISINHPTANVVTTQPNLSQNSQPATNAKQNNYGHQRSHRGRGRGRYHGGSKPICQLCG
        DEEY PIVV +Q K  +SW+++ ++LL +E R E  ++ K  I IN      V      S  +   TN   N++G   +HRG G  R   G +   +   
Subjt:  DEEYTPIVVVIQNK-EMSWNQVQSQLLNFENRQELLSAQKGVISINHPTANVVTTQPNLSQNSQPATNAKQNNYGHQRSHRGRGRGRYHGGSKPICQLCG

Query:  KTGHTAVVCYFRYEKNFNPSNT-QTKGAPGSSSTLIATPEHVCDSSWYLDSGASGHLTSDLSNLNLKTNYTGQDH
         T H          KNF PSN+     A   +ST + TPE V D SWY DSGA+ H+T++ +N+  K +Y+G ++
Subjt:  KTGHTAVVCYFRYEKNFNPSNT-QTKGAPGSSSTLIATPEHVCDSSWYLDSGASGHLTSDLSNLNLKTNYTGQDH

SwissProt top hits

e value

%identity

Alignment

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1

3.8e-27

27.12

Show/hide

Query:  LNQPTSIKMDRTNFLLWKNIALPLLRSYKLEGHLTGNEPCPEMSIIIPPSEDEPQELLMANPESDLWETTDQLLMGWLYNSMTLDVASQVINCGTAQELW
        +N     K+  TN+L+W      L   Y+L G L G       S  +PP+          NP+   W+  D+L+   +  ++++ V   V    TA ++W
Subjt:  LNQPTSIKMDRTNFLLWKNIALPLLRSYKLEGHLTGNEPCPEMSIIIPPSEDEPQELLMANPESDLWETTDQLLMGWLYNSMTLDVASQVINCGTAQELW

Query:  KAFQDLYGIQAVSQKDYLKRLLQQTRKGSMKMIEYLSVMKNFFDNLCLAGSPVDERDLISYVITGLDEEYTPIVVVIQNKEM--SWNQVQSQLLNFENRQ
        +  + +Y   +      L+  L+Q  KG+  + +Y+  +   FD L L G P+D  + +  V+  L EEY P++  I  K+   +  ++  +LLN E++ 
Subjt:  KAFQDLYGIQAVSQKDYLKRLLQQTRKGSMKMIEYLSVMKNFFDNLCLAGSPVDERDLISYVITGLDEEYTPIVVVIQNKEM--SWNQVQSQLLNFENRQ

Query:  ELLSAQKGVISINHPTANVVTTQPNLSQNSQPATNAKQNNYGHQRSHRGRGR------GRYH---GGSKPI---CQLCGKTGHTAVVC--YFRYEKNFNP
          +S+   VI I   TAN V+ +   + N+    N  +NN    R++    +        +H     SKP    CQ+CG  GH+A  C     +  + N 
Subjt:  ELLSAQKGVISINHPTANVVTTQPNLSQNSQPATNAKQNNYGHQRSHRGRGR------GRYH---GGSKPI---CQLCGKTGHTAVVC--YFRYEKNFNP

Query:  SNTQTKGAPGSSSTLIATPEHVCDSSWYLDSGASGHLTSDLSNLNLKTNYTGQD
            +   P      +A       ++W LDSGA+ H+TSD +NL+L   YTG D
Subjt:  SNTQTKGAPGSSSTLIATPEHVCDSSWYLDSGASGHLTSDLSNLNLKTNYTGQD

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2

3.4e-23

25.14

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Query:  LNQPTSIKMDRTNFLLWKNIALPLLRSYKLEGHLTGNEPCPEMSIIIPPSEDEPQELLMANPESDLWETTDQLLMGWLYNSMTLDVASQVINCGTAQELW
        +N     K+  TN+L+W      L   Y+L G L G+ P       +PP+      +   NP+   W   D+L+   +  ++++ V   V    TA ++W
Subjt:  LNQPTSIKMDRTNFLLWKNIALPLLRSYKLEGHLTGNEPCPEMSIIIPPSEDEPQELLMANPESDLWETTDQLLMGWLYNSMTLDVASQVINCGTAQELW

Query:  KAFQDLYGIQAVSQKDYLKRLLQQTRKGSMKMIEYLSVMKNFFDNLCLAGSPVDERDLISYVITGLDEEYTPIVVVIQNKEM--SWNQVQSQLLNFENRQ
        +  + +Y   +      L+ + +                   FD L L G P+D  + +  V+  L ++Y P++  I  K+   S  ++  +L+N E++ 
Subjt:  KAFQDLYGIQAVSQKDYLKRLLQQTRKGSMKMIEYLSVMKNFFDNLCLAGSPVDERDLISYVITGLDEEYTPIVVVIQNKEM--SWNQVQSQLLNFENRQ

Query:  ELLSAQKGVISINHPTANVVT---TQPNLSQNSQPATNAKQNNYGHQRSHRGRGRGRYHGGSKP-----ICQLCGKTGHTAVVC--YFRYEKNFNPSNTQ
          L++ + V+ I   TANVVT   T  N +QN++       NN     S +    G      +P      CQ+C   GH+A  C    +++   N   + 
Subjt:  ELLSAQKGVISINHPTANVVT---TQPNLSQNSQPATNAKQNNYGHQRSHRGRGRGRYHGGSKP-----ICQLCGKTGHTAVVC--YFRYEKNFNPSNTQ

Query:  TKGAPGSSSTLIATPEHVCDSSWYLDSGASGHLTSDLSNLNLKTNYTGQD
        +   P      +A       ++W LDSGA+ H+TSD +NL+    YTG D
Subjt:  TKGAPGSSSTLIATPEHVCDSSWYLDSGASGHLTSDLSNLNLKTNYTGQD

Arabidopsis top hits

e value

%identity

Alignment

AT1G34070.1 CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162)

2.0e-10

21.91

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Query:  PTSIKMDRTNFLLWKNIALPLLRSYKLEGHLTGNEPCPEMSIIIPPSEDEPQELLMANPESDLWETTDQLLMGWLYNSMT-LDVASQVINCGTAQELWKA
        P  + ++ +N+  W+ + L    S+ + GH+ G                    LL  N     W+  D ++   LY ++T        +   T++++W  
Subjt:  PTSIKMDRTNFLLWKNIALPLLRSYKLEGHLTGNEPCPEMSIIIPPSEDEPQELLMANPESDLWETTDQLLMGWLYNSMT-LDVASQVINCGTAQELWKA

Query:  FQDLYGIQAVSQKDYLKRLLQQTRKGSMKMIEYLSVMKNFFDNLCLAGSPVDERDLISYVITGLDEEYTPIVVVIQNKE--MSWNQVQSQLLNFENRQEL
         ++ +     ++   L   L+    G M++ +Y   MK   D+L     PV +R+L+ YV+ GL+ ++  I+ VI++++   S++   + L   E+R + 
Subjt:  FQDLYGIQAVSQKDYLKRLLQQTRKGSMKMIEYLSVMKNFFDNLCLAGSPVDERDLISYVITGLDEEYTPIVVVIQNKE--MSWNQVQSQLLNFENRQEL

Query:  LSAQKGVISINHPTANVVTTQPNLSQNSQPATNAKQNNYGHQRSHRGRGRG
         + +     ++H +++ V     L+ +  P     Q + G+Q  +RGRGRG
Subjt:  LSAQKGVISINHPTANVVTTQPNLSQNSQPATNAKQNNYGHQRSHRGRGRG

AT5G48050.1 CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162)

4.2e-13

25.19

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Query:  SIKMDRTNFLLWKNIALPLLRSYKLEGHLTGNEPCPEMSIIIPPSEDEPQELLMANPESDLWETTDQLLMGWLYNSMTLDVASQVINCG-TAQELWKAFQ
        ++ +++ N+ +W+ +   L  S+ + GH+ G+      S   P +E               W+  D L+  W+Y ++T  +   +I  G TA++LW + +
Subjt:  SIKMDRTNFLLWKNIALPLLRSYKLEGHLTGNEPCPEMSIIIPPSEDEPQELLMANPESDLWETTDQLLMGWLYNSMTLDVASQVINCG-TAQELWKAFQ

Query:  DLYGIQAVSQKDYLKRLLQQTRKGSMKMIEYLSVMKNFFDNLCLAGSPVDERDLISYVITGLDEEYTPIVVVIQNKE--MSWNQVQSQLLNFENRQELLS
        +L+     ++    +  L+ T    + + EY   +K+  D L    SP+ +R L+ +++ GL E+Y  I+ VI++K    S+ + +S LL  E+R  L +
Subjt:  DLYGIQAVSQKDYLKRLLQQTRKGSMKMIEYLSVMKNFFDNLCLAGSPVDERDLISYVITGLDEEYTPIVVVIQNKE--MSWNQVQSQLLNFENRQELLS

Query:  AQKGVIS-INHPT-ANVVTTQPNLSQNSQPATNAKQNNYGHQRSHR-----GRGRGRYHGGS
          K  +S  NHP+ +NV+ T P   +      +   +N G  RS +     G   GRY+  +
Subjt:  AQKGVIS-INHPT-ANVVTTQPNLSQNSQPATNAKQNNYGHQRSHR-----GRGRGRYHGGS

Sequences

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CDS sequence

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ATGGCCAACGCCAATCAGTCTTCATCAATGCCTGAATCCCAAGAAACTGAGAGACCTCTTGTTCACTCACCAATCCTGAAAACCCCTGGACCTGTTCACGTTTTAAAACC
GCCAGGCATCCGAGACGCTAAGTACAAAGGAGTATCAATGGGAACACCAACTTTCATGAACCTCCTGAATCAACCCACTTCTATCAAGATGGACCGCACCAACTTCCTTC
TGTGGAAGAATATAGCCTTGCCTCTCCTAAGGAGCTATAAGCTTGAAGGTCATCTTACAGGTAATGAACCGTGCCCAGAAATGTCCATTATCATCCCACCATCTGAGGAT
GAACCACAAGAGTTGCTGATGGCCAACCCTGAATCCGATTTGTGGGAAACAACAGATCAACTGTTAATGGGTTGGTTGTACAACTCAATGACACTTGATGTGGCCTCTCA
AGTCATCAACTGTGGAACCGCACAAGAGTTGTGGAAAGCTTTTCAGGACTTATATGGCATTCAAGCTGTAAGCCAGAAGGATTATCTCAAAAGGTTGCTTCAACAAACTC
GTAAAGGCAGTATGAAGATGATCGAATATTTAAGTGTCATGAAAAATTTCTTTGACAATTTATGCTTGGCAGGCTCTCCAGTTGATGAAAGGGACTTGATTTCCTATGTT
ATAACTGGTCTCGATGAGGAATACACACCCATCGTGGTGGTGATACAAAACAAGGAAATGAGTTGGAATCAGGTTCAATCACAGCTACTGAATTTTGAAAATAGGCAAGA
ACTTCTCTCAGCTCAGAAGGGAGTCATTTCCATTAACCATCCGACAGCAAATGTGGTGACTACTCAACCTAATCTTTCTCAGAACTCTCAACCTGCAACAAATGCTAAGC
AAAACAATTATGGTCATCAAAGATCTCATCGAGGCAGAGGAAGGGGAAGATACCATGGAGGGTCAAAGCCAATCTGCCAACTCTGTGGAAAGACAGGTCACACAGCGGTT
GTCTGCTATTTTCGGTATGAGAAAAACTTCAACCCTTCCAATACTCAAACTAAGGGTGCACCAGGGAGTTCTTCAACTCTCATAGCCACACCTGAACATGTTTGTGATAG
CTCCTGGTATTTGGACAGTGGGGCAAGTGGTCATCTGACATCAGATCTGAGCAATCTGAACTTGAAAACCAACTACACAGGACAAGATCACGGGGAAGGTTCTTCTGAAA
GGCACTCTTAA

mRNA sequence

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Protein sequence

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MANANQSSSMPESQETERPLVHSPILKTPGPVHVLKPPGIRDAKYKGVSMGTPTFMNLLNQPTSIKMDRTNFLLWKNIALPLLRSYKLEGHLTGNEPCPEMSIIIPPSED
EPQELLMANPESDLWETTDQLLMGWLYNSMTLDVASQVINCGTAQELWKAFQDLYGIQAVSQKDYLKRLLQQTRKGSMKMIEYLSVMKNFFDNLCLAGSPVDERDLISYV
ITGLDEEYTPIVVVIQNKEMSWNQVQSQLLNFENRQELLSAQKGVISINHPTANVVTTQPNLSQNSQPATNAKQNNYGHQRSHRGRGRGRYHGGSKPICQLCGKTGHTAV
VCYFRYEKNFNPSNTQTKGAPGSSSTLIATPEHVCDSSWYLDSGASGHLTSDLSNLNLKTNYTGQDHGEGSSERHS

Tan0006335 (gene) of Snake gourd v1 genome