; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0006360 (gene) of Snake gourd v1 genome

Gene IDTan0006360
OrganismTrichosanthes anguina (Snake gourd v1)
Descriptiontransmembrane protein 50A
Genome locationLG11:11717090..11723026
RNA-Seq ExpressionTan0006360
SyntenyTan0006360
Gene Ontology termsGO:0032511 - late endosome to vacuole transport via multivesicular body sorting pathway (biological process)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR007919 - Uncharacterised protein family UPF0220


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004140320.1 transmembrane protein 50A [Cucumis sativus]9.0e-7198.52Show/hide
Query:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQD
        MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQD
Subjt:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQD

Query:  SIVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE
        S+VK GPSVWTGVAGVLQCVFVLVSGLIYWTSHSE
Subjt:  SIVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE

XP_008460472.1 PREDICTED: transmembrane protein 50A [Cucumis melo]2.4e-7199.26Show/hide
Query:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQD
        MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQD
Subjt:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQD

Query:  SIVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE
        S+VKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE
Subjt:  SIVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE

XP_022141734.1 transmembrane protein 50A [Momordica charantia]6.9e-7199.26Show/hide
Query:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQD
        MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSV VSFVHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQD
Subjt:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQD

Query:  SIVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE
        SIVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE
Subjt:  SIVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE

XP_022993057.1 transmembrane protein 50A [Cucurbita maxima]5.3e-7198.52Show/hide
Query:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQD
        MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASFAALMFNCVR+EDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQD
Subjt:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQD

Query:  SIVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE
        S+VKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE
Subjt:  SIVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE

XP_038874577.1 transmembrane protein 50A [Benincasa hispida]3.1e-7198.52Show/hide
Query:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQD
        MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSF+HYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQD
Subjt:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQD

Query:  SIVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE
        S+VKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE
Subjt:  SIVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE

TrEMBL top hitse value%identityAlignment
A0A1S3CCJ8 transmembrane protein 50A1.1e-7199.26Show/hide
Query:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQD
        MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQD
Subjt:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQD

Query:  SIVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE
        S+VKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE
Subjt:  SIVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE

A0A6J1CJN8 transmembrane protein 50A3.3e-7199.26Show/hide
Query:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQD
        MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSV VSFVHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQD
Subjt:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQD

Query:  SIVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE
        SIVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE
Subjt:  SIVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE

A0A6J1FCW9 transmembrane protein 50A-like1.3e-7097.78Show/hide
Query:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQD
        MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFAS AALMFNCVR+EDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQD
Subjt:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQD

Query:  SIVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE
        S+VKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE
Subjt:  SIVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE

A0A6J1JRP9 transmembrane protein 50A2.5e-7198.52Show/hide
Query:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQD
        MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASFAALMFNCVR+EDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQD
Subjt:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQD

Query:  SIVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE
        S+VKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE
Subjt:  SIVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE

D6BRE9 Transmembrane protein 50a, putative1.1e-6995.56Show/hide
Query:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQD
        MDLAELW+IFGPGVAGAVFG GWWFW+DAVVCSSV VSFVHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQD
Subjt:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQD

Query:  SIVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE
        SIVKTGPSVWTG AGVLQCVFVL+SGLIYWTSHSE
Subjt:  SIVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE

SwissProt top hitse value%identityAlignment
O95807 Transmembrane protein 50A1.2e-0930.95Show/hide
Query:  AGAVFGAGWWFWVDAVVCSSVAVSFVH--YLPGIFASFAALMFNCVRKEDIDYSPYEE---GEWRLKLWLFFAYVVSFVSLAASVGLLIQDSIVKTGPSV
        AG +F  GWW  +DA V       F H  +  G+ A+ A LM N V    +    Y E   G+   ++WLF  ++++F SL AS+ +L    + K    V
Subjt:  AGAVFGAGWWFWVDAVVCSSVAVSFVH--YLPGIFASFAALMFNCVRKEDIDYSPYEE---GEWRLKLWLFFAYVVSFVSLAASVGLLIQDSIVKTGPSV

Query:  WTGVAGVLQCVFVLVSGLIYWTSHSE
        + G+A   Q  F+   GL++    +E
Subjt:  WTGVAGVLQCVFVLVSGLIYWTSHSE

P56557 Transmembrane protein 50B3.3e-0729.29Show/hide
Query:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVH--YLPGIFASFAALMFNCVRKEDIDYSPYEE---GEWRLKLWLFFAYVVSFVSLAASVG
        +D +E  +     VAG +F  GWW  +DA V         H  +  G+F++ A  M N V    +    YE    G    ++WLF  +++ F SL AS+ 
Subjt:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVH--YLPGIFASFAALMFNCVRKEDIDYSPYEE---GEWRLKLWLFFAYVVSFVSLAASVG

Query:  LLIQDSIVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE
        +L   + V     V+ G+A   Q   +  S LIY    +E
Subjt:  LLIQDSIVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE

Q3SZL9 Transmembrane protein 50B3.3e-0729.29Show/hide
Query:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVH--YLPGIFASFAALMFNCVRKEDIDYSPYEE---GEWRLKLWLFFAYVVSFVSLAASVG
        +D +E  +     VAG +F  GWW  +DA V         H  +  G+F++ A  M N V    +    YE    G    ++WLF  +++ F SL AS+ 
Subjt:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVH--YLPGIFASFAALMFNCVRKEDIDYSPYEE---GEWRLKLWLFFAYVVSFVSLAASVG

Query:  LLIQDSIVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE
        +L   + V     V+ G+A   Q   +  S LIY    +E
Subjt:  LLIQDSIVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE

Q54T60 Transmembrane protein 50 homolog1.0e-0825.76Show/hide
Query:  PGVAGAVFGAGWWFWVDAVVCSSV----------AVSFVHYLPGIFASFAALMFNCVRKEDIDYSP--YEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQ
        P +AG +F AGW+ W+D  V  +            + +++YLPGIFA+   +M N V    ++ +   ++ G  ++++WLF ++ +SF  + A++ +++ 
Subjt:  PGVAGAVFGAGWWFWVDAVVCSSV----------AVSFVHYLPGIFASFAALMFNCVRKEDIDYSP--YEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQ

Query:  DSIV---KTGPSVWTGVAGVLQCVFVLVSGLI
          +        + W G+A  LQ   + +S L+
Subjt:  DSIV---KTGPSVWTGVAGVLQCVFVLVSGLI

Q9CXL1 Transmembrane protein 50A5.4e-1030Show/hide
Query:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVH--YLPGIFASFAALMFNCVRKEDIDYSPYEE---GEWRLKLWLFFAYVVSFVSLAASVG
        MD  E  +      AG +F  GWW  +DA V       F H  +  G+ A+ A LM N V    +    Y E   G+   ++WLF  ++++F SL AS+ 
Subjt:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVH--YLPGIFASFAALMFNCVRKEDIDYSPYEE---GEWRLKLWLFFAYVVSFVSLAASVG

Query:  LLIQDSIVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE
        +L    + K    V+ G+A   Q  F+   GL++    +E
Subjt:  LLIQDSIVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE

Arabidopsis top hitse value%identityAlignment
AT1G36980.1 unknown protein2.0e-6887.41Show/hide
Query:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQD
        MDLAELW+IFGPG +GAVFG GWWFWVDAVVCSS+ V FVHYLPGIFAS  ALMFNCVRKEDIDYSPY+EGEWRLKLWLF AYVV+FVSLAASVGLLIQD
Subjt:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQD

Query:  SIVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE
        S+VKTGPS WTGVAGV QCVFVL+SGL+YWTSHSE
Subjt:  SIVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTTGGCGGAACTGTGGTCAATTTTCGGCCCTGGCGTCGCCGGAGCTGTGTTCGGCGCCGGATGGTGGTTCTGGGTTGACGCCGTTGTCTGCAGTTCTGTCGCCGT
CTCCTTCGTCCACTACCTTCCAGGTATTTTTGCTTCGTTTGCGGCTCTGATGTTCAATTGCGTTCGGAAGGAAGACATCGATTATTCTCCATATGAGGAAGGCGAATGGA
GATTGAAGCTTTGGCTCTTCTTTGCTTATGTGGTATCATTCGTTTCATTAGCAGCATCAGTCGGACTCTTGATTCAGGATTCAATAGTAAAAACTGGCCCATCAGTGTGG
ACGGGAGTCGCAGGAGTATTGCAGTGTGTGTTTGTGTTGGTTAGTGGGTTGATTTACTGGACTTCTCATTCGGAATAA
mRNA sequenceShow/hide mRNA sequence
TTTTTTTTGAAAAAACAATTATCCAACACTTTACCTTTTAAAACAGTAAATAAACATATATTTATACGAATATCAGAGTTTCATCGGAAAGTCAGATGAGTGTTCAATTT
TTTGGCAGGAAAGGGGTCTGAGCTGTGCCATCATTCAGTTCACACTAGCCTCTCCAAATCCATCTGTCTCGAACCCCAATCGTAAGGAGAAGGCAAAGGGAAGAAGCCAC
GAATGGATTTGGCGGAACTGTGGTCAATTTTCGGCCCTGGCGTCGCCGGAGCTGTGTTCGGCGCCGGATGGTGGTTCTGGGTTGACGCCGTTGTCTGCAGTTCTGTCGCC
GTCTCCTTCGTCCACTACCTTCCAGGTATTTTTGCTTCGTTTGCGGCTCTGATGTTCAATTGCGTTCGGAAGGAAGACATCGATTATTCTCCATATGAGGAAGGCGAATG
GAGATTGAAGCTTTGGCTCTTCTTTGCTTATGTGGTATCATTCGTTTCATTAGCAGCATCAGTCGGACTCTTGATTCAGGATTCAATAGTAAAAACTGGCCCATCAGTGT
GGACGGGAGTCGCAGGAGTATTGCAGTGTGTGTTTGTGTTGGTTAGTGGGTTGATTTACTGGACTTCTCATTCGGAATAATAAGCTGGAAAGAATTATGCACTTAGACCT
CAGAGACTGAAGAGTTACCAATTGCATAGAGAGCTGCAGTGCTTGCAGTGTCGTCATTTGTGTATTTATTTGGCTTTTCCAACTATAGAACTGAACTGAAAGGGCTTTTT
ACTTCTTGTAAATGTCGTGTTAATCTTAAGCTGAAACCATGTCTATATATGTTTATGAATTCAATATAAGTGAGCCAGATGTTCGATGTTTCAGCCATTTCAGTTTGTCG
CAGTGTTCATATTATTTACTTAAAAGGCATAAAATGAT
Protein sequenceShow/hide protein sequence
MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQDSIVKTGPSVW
TGVAGVLQCVFVLVSGLIYWTSHSE