; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0006398 (gene) of Snake gourd v1 genome

Gene IDTan0006398
OrganismTrichosanthes anguina (Snake gourd v1)
Descriptiontranscription factor ILI6-like
Genome locationLG09:71640222..71640593
RNA-Seq ExpressionTan0006398
SyntenyTan0006398
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0040008 - regulation of growth (biological process)
GO:0005634 - nucleus (cellular component)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR011598 - Myc-type, basic helix-loop-helix (bHLH) domain
IPR036638 - Helix-loop-helix DNA-binding domain superfamily
IPR044293 - Transcription factor PRE


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008453188.1 PREDICTED: transcription factor PRE3-like [Cucumis melo]1.0e-3394.62Show/hide
Query:  MSSRRSSRSRQSGSSR-ITDDQINDLVSKLQQLLPEIRHRQSDKVSAAKVLQETCNYIKSLHREVDDLSERLSELLATSDTAQAAVIRSLLMQ
        MSSRR SRSRQSGSSR ITDDQINDLVSKLQQLLPEIRHRQSDKVSAAKVLQETCNYI++LHREVDDLSERLSELLATSDTAQAA+IRSLLMQ
Subjt:  MSSRRSSRSRQSGSSR-ITDDQINDLVSKLQQLLPEIRHRQSDKVSAAKVLQETCNYIKSLHREVDDLSERLSELLATSDTAQAAVIRSLLMQ

XP_022135424.1 transcription factor ILI6-like [Momordica charantia]7.1e-3595.65Show/hide
Query:  MSSRRSSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKVSAAKVLQETCNYIKSLHREVDDLSERLSELLATSDTAQAAVIRSLLMQ
        MSSRR SRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKVSAA VLQETCNYI+SLHREVDDLSERLSELLATSDTAQAA+IRSLLMQ
Subjt:  MSSRRSSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKVSAAKVLQETCNYIKSLHREVDDLSERLSELLATSDTAQAAVIRSLLMQ

XP_022973084.1 transcription factor ILI6-like [Cucurbita maxima]1.0e-3393.48Show/hide
Query:  MSSRRSSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKVSAAKVLQETCNYIKSLHREVDDLSERLSELLATSDTAQAAVIRSLLMQ
        MSSRR SRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDK SAA VLQETCNYI+SLHREVDDLSERL+ELLATSDTAQAA+IRSLLMQ
Subjt:  MSSRRSSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKVSAAKVLQETCNYIKSLHREVDDLSERLSELLATSDTAQAAVIRSLLMQ

XP_022987208.1 transcription factor PRE3-like [Cucurbita maxima]7.8e-3492.39Show/hide
Query:  MSSRRSSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKVSAAKVLQETCNYIKSLHREVDDLSERLSELLATSDTAQAAVIRSLLMQ
        MSSRR SRSRQSGSSRITDDQINDLVSKLQQLLPEIRH QSDKVSAAK+LQETCNYIK+LHREVDDLSERLSELLA+SDTAQAA+IR+LLMQ
Subjt:  MSSRRSSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKVSAAKVLQETCNYIKSLHREVDDLSERLSELLATSDTAQAAVIRSLLMQ

XP_038880650.1 transcription factor PRE3-like [Benincasa hispida]2.1e-3494.57Show/hide
Query:  MSSRRSSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKVSAAKVLQETCNYIKSLHREVDDLSERLSELLATSDTAQAAVIRSLLMQ
        MSSRR SRSRQSGSSRITDDQINDLVSKLQQLLPEIRH QSDKVSAAKVLQETCNYI++LHREVDDLSERLSELLATSDTAQAA+IRSLLMQ
Subjt:  MSSRRSSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKVSAAKVLQETCNYIKSLHREVDDLSERLSELLATSDTAQAAVIRSLLMQ

TrEMBL top hitse value%identityAlignment
A0A1S3BWE2 transcription factor PRE3-like4.9e-3494.62Show/hide
Query:  MSSRRSSRSRQSGSSR-ITDDQINDLVSKLQQLLPEIRHRQSDKVSAAKVLQETCNYIKSLHREVDDLSERLSELLATSDTAQAAVIRSLLMQ
        MSSRR SRSRQSGSSR ITDDQINDLVSKLQQLLPEIRHRQSDKVSAAKVLQETCNYI++LHREVDDLSERLSELLATSDTAQAA+IRSLLMQ
Subjt:  MSSRRSSRSRQSGSSR-ITDDQINDLVSKLQQLLPEIRHRQSDKVSAAKVLQETCNYIKSLHREVDDLSERLSELLATSDTAQAAVIRSLLMQ

A0A6J1C1E4 transcription factor ILI6-like3.4e-3595.65Show/hide
Query:  MSSRRSSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKVSAAKVLQETCNYIKSLHREVDDLSERLSELLATSDTAQAAVIRSLLMQ
        MSSRR SRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKVSAA VLQETCNYI+SLHREVDDLSERLSELLATSDTAQAA+IRSLLMQ
Subjt:  MSSRRSSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKVSAAKVLQETCNYIKSLHREVDDLSERLSELLATSDTAQAAVIRSLLMQ

A0A6J1F586 transcription factor ILI6-like1.1e-3392.39Show/hide
Query:  MSSRRSSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKVSAAKVLQETCNYIKSLHREVDDLSERLSELLATSDTAQAAVIRSLLMQ
        MS+RR SRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDK SAA VLQETCNYI+SLHREVDDLSERL+ELLATSDTAQAA+IRSLLMQ
Subjt:  MSSRRSSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKVSAAKVLQETCNYIKSLHREVDDLSERLSELLATSDTAQAAVIRSLLMQ

A0A6J1IDH8 transcription factor ILI6-like4.9e-3493.48Show/hide
Query:  MSSRRSSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKVSAAKVLQETCNYIKSLHREVDDLSERLSELLATSDTAQAAVIRSLLMQ
        MSSRR SRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDK SAA VLQETCNYI+SLHREVDDLSERL+ELLATSDTAQAA+IRSLLMQ
Subjt:  MSSRRSSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKVSAAKVLQETCNYIKSLHREVDDLSERLSELLATSDTAQAAVIRSLLMQ

A0A6J1JIT1 transcription factor PRE3-like3.8e-3492.39Show/hide
Query:  MSSRRSSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKVSAAKVLQETCNYIKSLHREVDDLSERLSELLATSDTAQAAVIRSLLMQ
        MSSRR SRSRQSGSSRITDDQINDLVSKLQQLLPEIRH QSDKVSAAK+LQETCNYIK+LHREVDDLSERLSELLA+SDTAQAA+IR+LLMQ
Subjt:  MSSRRSSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKVSAAKVLQETCNYIKSLHREVDDLSERLSELLATSDTAQAAVIRSLLMQ

SwissProt top hitse value%identityAlignment
A2Z730 Transcription factor ILI74.0e-2573.12Show/hide
Query:  MSSRRSSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKVSAAKVLQETCNYIKSLHREVDDLSERLSELLATSD--TAQAAVIRSLLM
        MSSR  SRSR S ++RITD+QI DLVSKLQ LLPE R R +D+V +A+VLQETC+YI+SLHREVDDLSERL+ELLA +D  TAQAAVIR LLM
Subjt:  MSSRRSSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKVSAAKVLQETCNYIKSLHREVDDLSERLSELLATSD--TAQAAVIRSLLM

B8APB5 Transcription factor ILI66.0e-2979.57Show/hide
Query:  MSSRRSSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKVSAAKVLQETCNYIKSLHREVDDLSERLSELLATSD--TAQAAVIRSLLM
        MSSRR SRSRQSGSSRITD+QI+DLVSKLQ LLPE R R +D+V +++VLQETCNYI+SLH+EVDDLSERLSELLATSD  +AQAA+IRSLLM
Subjt:  MSSRRSSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKVSAAKVLQETCNYIKSLHREVDDLSERLSELLATSD--TAQAAVIRSLLM

Q0DUR2 Transcription factor ILI66.0e-2979.57Show/hide
Query:  MSSRRSSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKVSAAKVLQETCNYIKSLHREVDDLSERLSELLATSD--TAQAAVIRSLLM
        MSSRR SRSRQSGSSRITD+QI+DLVSKLQ LLPE R R +D+V +++VLQETCNYI+SLH+EVDDLSERLSELLATSD  +AQAA+IRSLLM
Subjt:  MSSRRSSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKVSAAKVLQETCNYIKSLHREVDDLSERLSELLATSD--TAQAAVIRSLLM

Q8GW32 Transcription factor PRE62.9e-3180.43Show/hide
Query:  MSSRRSSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKVSAAKVLQETCNYIKSLHREVDDLSERLSELLATSD--TAQAAVIRSLL
        MSSRRSSRSRQSGSSRI+DDQI+DLVSKLQ L+PE+R R+SDKVSA+KVLQETCNYI++LHREVDDLS+RLSELLA++D  +A+AA+IRSLL
Subjt:  MSSRRSSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKVSAAKVLQETCNYIKSLHREVDDLSERLSELLATSD--TAQAAVIRSLL

Q9CA64 Transcription factor PRE36.0e-2976.34Show/hide
Query:  MSSRRSSRSRQSGSSRITDDQINDLVSKLQQLLPEIR-HRQSDKVSAAKVLQETCNYIKSLHREVDDLSERLSELLATSDTAQAAVIRSLLMQ
        MS RRS   + SG+SRI++DQINDL+ KLQQLLPE+R  R+SDKVSAA+VLQ+TCNYI++LHREVDDLSERLSELLA SDTAQAA+IRSLL Q
Subjt:  MSSRRSSRSRQSGSSRITDDQINDLVSKLQQLLPEIR-HRQSDKVSAAKVLQETCNYIKSLHREVDDLSERLSELLATSDTAQAAVIRSLLMQ

Arabidopsis top hitse value%identityAlignment
AT1G26945.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein2.1e-3280.43Show/hide
Query:  MSSRRSSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKVSAAKVLQETCNYIKSLHREVDDLSERLSELLATSD--TAQAAVIRSLL
        MSSRRSSRSRQSGSSRI+DDQI+DLVSKLQ L+PE+R R+SDKVSA+KVLQETCNYI++LHREVDDLS+RLSELLA++D  +A+AA+IRSLL
Subjt:  MSSRRSSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKVSAAKVLQETCNYIKSLHREVDDLSERLSELLATSD--TAQAAVIRSLL

AT1G74500.1 activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 14.3e-3076.34Show/hide
Query:  MSSRRSSRSRQSGSSRITDDQINDLVSKLQQLLPEIR-HRQSDKVSAAKVLQETCNYIKSLHREVDDLSERLSELLATSDTAQAAVIRSLLMQ
        MS RRS   + SG+SRI++DQINDL+ KLQQLLPE+R  R+SDKVSAA+VLQ+TCNYI++LHREVDDLSERLSELLA SDTAQAA+IRSLL Q
Subjt:  MSSRRSSRSRQSGSSRITDDQINDLVSKLQQLLPEIR-HRQSDKVSAAKVLQETCNYIKSLHREVDDLSERLSELLATSDTAQAAVIRSLLMQ

AT3G28857.1 basic helix-loop-helix (bHLH) DNA-binding family protein1.1e-2267.02Show/hide
Query:  MSSRRSSRSRQSGSSRITDDQINDLVSKLQQLLPEI-RHRQSDKVSAAKVLQETCNYIKSLHREVDDLSERLSELL--ATSDTAQAAVIRSLLM
        MS+RRS ++  S +SRI+DDQ+ DLVSKL+Q LPEI   R+SDKVSA+KVLQETCNYI+ LHREVD+LS+RLS+LL     D+ +AAVIRSLLM
Subjt:  MSSRRSSRSRQSGSSRITDDQINDLVSKLQQLLPEI-RHRQSDKVSAAKVLQETCNYIKSLHREVDDLSERLSELL--ATSDTAQAAVIRSLLM

AT3G47710.1 BANQUO 32.4e-2568.13Show/hide
Query:  SRRSSRSRQSGSSRITDDQINDLVSKLQQLLPEI-RHRQSDKVSAAKVLQETCNYIKSLHREVDDLSERLSELLATSDTAQAAVIRSLLMQ
        S R SRSRQ+G+S ITD+QINDLV +L +LLPE+  +R+S KVSA++VLQETC+YI++L +EVDDLSERLS+LL ++D+AQAA+IRSLLMQ
Subjt:  SRRSSRSRQSGSSRITDDQINDLVSKLQQLLPEI-RHRQSDKVSAAKVLQETCNYIKSLHREVDDLSERLSELLATSDTAQAAVIRSLLMQ

AT5G39860.1 basic helix-loop-helix (bHLH) DNA-binding family protein1.6e-2164.89Show/hide
Query:  MSSRRSSRSRQSGSSRITDDQINDLVSKLQQLLPEI-RHRQSDKVSAAKVLQETCNYIKSLHREVDDLSERLSELLAT--SDTAQAAVIRSLLM
        MS+RRS +S  S + RI+D+Q+ DLVSKL+Q+LPEI + R+SDK SA+KVLQETCNYI++L+REVD+LSERLS+LL +   D+ +AAVIRSLLM
Subjt:  MSSRRSSRSRQSGSSRITDDQINDLVSKLQQLLPEI-RHRQSDKVSAAKVLQETCNYIKSLHREVDDLSERLSELLAT--SDTAQAAVIRSLLM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAAGCAGAAGATCGTCCAGATCTAGGCAATCAGGCAGTTCAAGAATCACCGATGACCAAATTAACGATCTTGTTTCCAAGTTGCAGCAACTCCTTCCTGAGATTCG
CCACAGGCAATCTGACAAGGTTTCAGCAGCGAAAGTGTTGCAGGAGACGTGTAACTACATAAAGAGTTTGCACAGAGAGGTGGATGATCTAAGTGAGAGACTTTCAGAGT
TGTTGGCCACTTCTGATACTGCTCAAGCTGCCGTTATTAGGAGCTTGCTGATGCAATAA
mRNA sequenceShow/hide mRNA sequence
ATGTCAAGCAGAAGATCGTCCAGATCTAGGCAATCAGGCAGTTCAAGAATCACCGATGACCAAATTAACGATCTTGTTTCCAAGTTGCAGCAACTCCTTCCTGAGATTCG
CCACAGGCAATCTGACAAGGTTTCAGCAGCGAAAGTGTTGCAGGAGACGTGTAACTACATAAAGAGTTTGCACAGAGAGGTGGATGATCTAAGTGAGAGACTTTCAGAGT
TGTTGGCCACTTCTGATACTGCTCAAGCTGCCGTTATTAGGAGCTTGCTGATGCAATAA
Protein sequenceShow/hide protein sequence
MSSRRSSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKVSAAKVLQETCNYIKSLHREVDDLSERLSELLATSDTAQAAVIRSLLMQ