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Tan0006435 (gene) of Snake gourd v1 genome

Gene IDTan0006435
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRING-type E3 ubiquitin transferase
Genome locationLG01:30849781..30850359
RNA-Seq ExpressionTan0006435
SyntenyTan0006435
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8653244.1 hypothetical protein Csa_019886, partial [Cucumis sativus]3.0e-2755.12Show/hide
Query:  PSPSPS-HSLFGLPPYVEFLGIVFIFILFIIYFFLLKLICTTYISHDD--ELSETVEIEAPIFIYGGGDEEEGGEKECVICLCEIEKGEKCRRMSTCSHV
        PSP PS HSL  LP Y+E L +  +F+  ++  F + ++C    +  D  E  E V+IEAPIF YGG   +EGGE++C ICLCEIE+GEKCR+M TC HV
Subjt:  PSPSPS-HSLFGLPPYVEFLGIVFIFILFIIYFFLLKLICTTYISHDD--ELSETVEIEAPIFIYGGGDEEEGGEKECVICLCEIEKGEKCRRMSTCSHV

Query:  FHKDCIDRWVMVERHCPLCRSCVCVVV
        FHKDCI RW  V+ HCP+CR+ VCVVV
Subjt:  FHKDCIDRWVMVERHCPLCRSCVCVVV

XP_011648512.2 RING-H2 finger protein ATL79 [Cucumis sativus]3.9e-2753.79Show/hide
Query:  SPSPPPPSPSPSHSLFGLPPYVEFLGIVFIFILFIIYFFLLKLICTTYISHDD--ELSETVEIEAPIFIYGGGDEEEGGEKECVICLCEIEKGEKCRRMS
        SPSP P    P HS   LP +   L  V + +L +++ F + ++CT   +  D  E SE ++IEAPIF Y G    EG E+ECVICLCEIE+GEKCR+M 
Subjt:  SPSPPPPSPSPSHSLFGLPPYVEFLGIVFIFILFIIYFFLLKLICTTYISHDD--ELSETVEIEAPIFIYGGGDEEEGGEKECVICLCEIEKGEKCRRMS

Query:  TCSHVFHKDCIDRWVMVERHCPLCRSCVC-VVVDRDGKPTASSSS
        TC HVFHKDCIDRW  V  HCP+CR+ VC VV+DR G   ASSSS
Subjt:  TCSHVFHKDCIDRWVMVERHCPLCRSCVC-VVVDRDGKPTASSSS

XP_011648513.1 RING-H2 finger protein ATL39 [Cucumis sativus]1.6e-2854.29Show/hide
Query:  PSPSPS-HSLFGLPPYVEFLGIVFIFILFIIYFFLLKLICTTYISHDD--ELSETVEIEAPIFIYGGGDEEEGGEKECVICLCEIEKGEKCRRMSTCSHV
        PSP PS HSL  LP Y+E L +  +F+  ++  F + ++C    +  D  E  E V+IEAPIF YGG   +EGGE++C ICLCEIE+GEKCR+M TC HV
Subjt:  PSPSPS-HSLFGLPPYVEFLGIVFIFILFIIYFFLLKLICTTYISHDD--ELSETVEIEAPIFIYGGGDEEEGGEKECVICLCEIEKGEKCRRMSTCSHV

Query:  FHKDCIDRWVMVERHCPLCRSCVC-VVVDRDGKPTASSSS
        FHKDCI RW  V+ HCP+CR+ VC VVVDR G    SS+S
Subjt:  FHKDCIDRWVMVERHCPLCRSCVC-VVVDRDGKPTASSSS

XP_011659858.1 E3 ubiquitin-protein ligase ATL9-like [Cucumis sativus]7.8e-2855.17Show/hide
Query:  SPSPPPPSPSPSHSLFGLPPYVEFLGIVFIFILFIIYFFLLKLICTTYISHDD--ELSETVEIEAPIFIYGGGDEEEGGEKECVICLCEIEKGEKCRRMS
        SPSP P    P HS   LP +   L +    +L I+ F  + ++CT   +  D  ELSE ++IEAPIF Y   +E EGGE+EC ICLCEIE+GEKCR+M 
Subjt:  SPSPPPPSPSPSHSLFGLPPYVEFLGIVFIFILFIIYFFLLKLICTTYISHDD--ELSETVEIEAPIFIYGGGDEEEGGEKECVICLCEIEKGEKCRRMS

Query:  TCSHVFHKDCIDRWVMVERHCPLCRSCVCVVV-DRDGKPTASSSS
        TC HVFHKDCIDRW  V  HCP+CR+ VCVVV DR G   ASSSS
Subjt:  TCSHVFHKDCIDRWVMVERHCPLCRSCVCVVV-DRDGKPTASSSS

XP_038895796.1 RING-H2 finger protein ATL40-like [Benincasa hispida]1.1e-3456.21Show/hide
Query:  MSRQIFSIPLMIFPTSVPSTFSPPSSSPSPSPPPPSPSPSHSLFGLPPYVEFLGIVFIFILFIIYFFLLKLICTTYISHD-DELSETVEIEAPIFIYGGG
        M   IFS    IFP S+PS        PSPSPP    SPS SL  + PY E+L  VFI +LFI+Y +L+ +        D +EL ETVE EAP+F Y   
Subjt:  MSRQIFSIPLMIFPTSVPSTFSPPSSSPSPSPPPPSPSPSHSLFGLPPYVEFLGIVFIFILFIIYFFLLKLICTTYISHD-DELSETVEIEAPIFIYGGG

Query:  DEEEGGEKECVICLCEIEKGEKCRRMSTCSHVFHKDCIDRWVMVERHCPLCRSCVCVVVDRDGKPTASS
          E+GG+KECVICLC+IEK EKCRRM+TC+HVFHKDCID+W MVE HCPLCR+ +CVVVD DG    SS
Subjt:  DEEEGGEKECVICLCEIEKGEKCRRMSTCSHVFHKDCIDRWVMVERHCPLCRSCVCVVVDRDGKPTASS

TrEMBL top hitse value%identityAlignment
A0A0A0K790 RING-type domain-containing protein4.2e-2753.59Show/hide
Query:  SPPSSSPSPSPPPPSPSPS-HSLFGLPPYVEFLGIVFIFILFIIYFFLLKLICTTYISHDD--ELSETVEIEAPIFIYGGGDEEEGGEKECVICLCEIEK
        S P+  PS  P  PSP PS HSL  LP ++  L  V + +L +++ F+L ++C    +  D  EL E ++IEAPIF Y G    EG E+EC ICLCEIE+
Subjt:  SPPSSSPSPSPPPPSPSPS-HSLFGLPPYVEFLGIVFIFILFIIYFFLLKLICTTYISHDD--ELSETVEIEAPIFIYGGGDEEEGGEKECVICLCEIEK

Query:  GEKCRRMSTCSHVFHKDCIDRWVMVERHCPLCRSCVC-VVVDRDGKPTASSSS
        GEKCR+M TC HVFHKDCIDRW  V+ HCP+CR+ VC VVVD  G   ASSSS
Subjt:  GEKCRRMSTCSHVFHKDCIDRWVMVERHCPLCRSCVC-VVVDRDGKPTASSSS

A0A0A0LUU6 RING-type E3 ubiquitin transferase1.9e-2758.77Show/hide
Query:  ILFIIYFFLLKLICTTYISHDD--ELSETVEIEAPIFIYGGGDEEEGGEKECVICLCEIEKGEKCRRMSTCSHVFHKDCIDRWVMVERHCPLCRSCVC-V
        +L I+ F  + ++CT   +  D  E S+ ++IEAPIF Y G    EGGE+ECVICLCEIE+GEKCR+M TC HVFHKDCIDRW  V  HCP+CR+ VC V
Subjt:  ILFIIYFFLLKLICTTYISHDD--ELSETVEIEAPIFIYGGGDEEEGGEKECVICLCEIEKGEKCRRMSTCSHVFHKDCIDRWVMVERHCPLCRSCVC-V

Query:  VVDRDGKPTASSSS
        V+DR G   ASSSS
Subjt:  VVDRDGKPTASSSS

A0A0A0LY10 RING-type E3 ubiquitin transferase7.6e-2954.29Show/hide
Query:  PSPSPS-HSLFGLPPYVEFLGIVFIFILFIIYFFLLKLICTTYISHDD--ELSETVEIEAPIFIYGGGDEEEGGEKECVICLCEIEKGEKCRRMSTCSHV
        PSP PS HSL  LP Y+E L +  +F+  ++  F + ++C    +  D  E  E V+IEAPIF YGG   +EGGE++C ICLCEIE+GEKCR+M TC HV
Subjt:  PSPSPS-HSLFGLPPYVEFLGIVFIFILFIIYFFLLKLICTTYISHDD--ELSETVEIEAPIFIYGGGDEEEGGEKECVICLCEIEKGEKCRRMSTCSHV

Query:  FHKDCIDRWVMVERHCPLCRSCVC-VVVDRDGKPTASSSS
        FHKDCI RW  V+ HCP+CR+ VC VVVDR G    SS+S
Subjt:  FHKDCIDRWVMVERHCPLCRSCVC-VVVDRDGKPTASSSS

A0A5A7U2S7 RING-type E3 ubiquitin transferase2.5e-2755.46Show/hide
Query:  IFILFIIYFFLLKLICTTYISHDD---ELSETVEIEAPIFIYGGGDEEEGGEKECVICLCEIEKGEKCRRMSTCSHVFHKDCIDRWVMVERHCPLCRSCV
        +F+LF++   ++ ++C    +  D    LSE ++I+APIF YGG  E++  E+EC ICLCE+E+GEKCR+M TC HVFHKDCIDRW  VE HCPLCR+ +
Subjt:  IFILFIIYFFLLKLICTTYISHDD---ELSETVEIEAPIFIYGGGDEEEGGEKECVICLCEIEKGEKCRRMSTCSHVFHKDCIDRWVMVERHCPLCRSCV

Query:  CVVVDRDGKPTASSSSSSS
        CVVVDRDG   AS SS S+
Subjt:  CVVVDRDGKPTASSSSSSS

A0A6J1E0E9 RING-H2 finger protein ATL1-like9.4e-2754.48Show/hide
Query:  SPPSSSPSPSPPPPSPSPSHSLFG-LPPYVEFLGIVFIFILFIIYFFLLKLICTTYI-SHDDELSET-----VEIEAPIFIYGG-GDEEEGGEKECVICL
        SPP S  SP PP P  + SHSLFG LP +V+ L +V +F+L I+Y F+L+LI      S+  EL E      ++IEAPIF YGG GD++E    EC ICL
Subjt:  SPPSSSPSPSPPPPSPSPSHSLFG-LPPYVEFLGIVFIFILFIIYFFLLKLICTTYI-SHDDELSET-----VEIEAPIFIYGG-GDEEEGGEKECVICL

Query:  CEIEKGEKCRRMSTCSHVFHKDCIDRWVMVERHCPLCRSCVCVVV
         + E+GEKCR+MS C HVFH+DCIDRW+  ERHCPLCR+ +C+VV
Subjt:  CEIEKGEKCRRMSTCSHVFHKDCIDRWVMVERHCPLCRSCVCVVV

SwissProt top hitse value%identityAlignment
Q8GW38 RING-H2 finger protein ATL472.4e-1142.11Show/hide
Query:  HDDELSETVEIEAPIFIYGGGDEEEGGEKE---CVICLCEIEKGEKCRRMSTCSHVFHKDCIDRWVMVERHCPLCR
        HD  L + +    P+F+Y    +E  G KE   C +CLCE  + +K R +  CSH FH DCID W++    CPLCR
Subjt:  HDDELSETVEIEAPIFIYGGGDEEEGGEKE---CVICLCEIEKGEKCRRMSTCSHVFHKDCIDRWVMVERHCPLCR

Q8W571 RING-H2 finger protein ATL321.3e-0939.02Show/hide
Query:  LSETVEIEAPIFIYGGGDEEEGGEK--ECVICLCEIEKGEKCRRMSTCSHVFHKDCIDRWVMVERHCPLCRSCVCVVVDRDG
        L   V    P+F Y    E + G K  EC ICL E+E  E  R +  C+H+FH DCID W+     CP+CRS +    ++ G
Subjt:  LSETVEIEAPIFIYGGGDEEEGGEK--ECVICLCEIEKGEKCRRMSTCSHVFHKDCIDRWVMVERHCPLCRSCVCVVVDRDG

Q9LSW9 RING-H2 finger protein ATL161.7e-0941.98Show/hide
Query:  IFIYGGGDEEEGGEKECVICLCEIEKGEKCRRMSTCSHVFHKDCIDRWVMVERHCPLCRSCVCVVVDRDGKPTASSSSSSS
        +F   G +EEE   +EC +CL E +  EK R +  CSH+FH DCID W+    +CPLCR+ V    D    P   S+ S+S
Subjt:  IFIYGGGDEEEGGEKECVICLCEIEKGEKCRRMSTCSHVFHKDCIDRWVMVERHCPLCRSCVCVVVDRDGKPTASSSSSSS

Q9LUZ9 RING-H2 finger protein ATL634.1e-1137.5Show/hide
Query:  DDELSETVEIEAPIFIYGGGDEEEGGEKECVICLCEIEKGEKCRRMSTCSHVFHKDCIDRWVMVERHCPLCRSCVCVVV-DRDGKPTASSSSSSSSSSSS
        D  L  +V    P+F+Y   +EEE  E+ECVICL   E G+  R++  C H FH +CID W+     CPLCRS V   V D +    A ++    +    
Subjt:  DDELSETVEIEAPIFIYGGGDEEEGGEKECVICLCEIEKGEKCRRMSTCSHVFHKDCIDRWVMVERHCPLCRSCVCVVV-DRDGKPTASSSSSSSSSSSS

Query:  EFSP
        + SP
Subjt:  EFSP

Q9SRM0 RING-H2 finger protein ATL663.4e-1050.91Show/hide
Query:  EEGGEKECVICLCEIEKGEKCRRMSTCSHVFHKDCIDRWVMVERHCPLCRSCVCV
        EE  EKEC ICL   E+GEK + +  CSH +H +C+DRW+  E  CPLCR  + V
Subjt:  EEGGEKECVICLCEIEKGEKCRRMSTCSHVFHKDCIDRWVMVERHCPLCRSCVCV

Arabidopsis top hitse value%identityAlignment
AT1G23980.1 RING/U-box superfamily protein1.7e-1242.11Show/hide
Query:  HDDELSETVEIEAPIFIYGGGDEEEGGEKE---CVICLCEIEKGEKCRRMSTCSHVFHKDCIDRWVMVERHCPLCR
        HD  L + +    P+F+Y    +E  G KE   C +CLCE  + +K R +  CSH FH DCID W++    CPLCR
Subjt:  HDDELSETVEIEAPIFIYGGGDEEEGGEKE---CVICLCEIEKGEKCRRMSTCSHVFHKDCIDRWVMVERHCPLCR

AT3G11110.1 RING/U-box superfamily protein2.4e-1150.91Show/hide
Query:  EEGGEKECVICLCEIEKGEKCRRMSTCSHVFHKDCIDRWVMVERHCPLCRSCVCV
        EE  EKEC ICL   E+GEK + +  CSH +H +C+DRW+  E  CPLCR  + V
Subjt:  EEGGEKECVICLCEIEKGEKCRRMSTCSHVFHKDCIDRWVMVERHCPLCRSCVCV

AT4G40070.1 RING/U-box superfamily protein9.3e-1139.02Show/hide
Query:  LSETVEIEAPIFIYGGGDEEEGGEK--ECVICLCEIEKGEKCRRMSTCSHVFHKDCIDRWVMVERHCPLCRSCVCVVVDRDG
        L   V    P+F Y    E + G K  EC ICL E+E  E  R +  C+H+FH DCID W+     CP+CRS +    ++ G
Subjt:  LSETVEIEAPIFIYGGGDEEEGGEK--ECVICLCEIEKGEKCRRMSTCSHVFHKDCIDRWVMVERHCPLCRSCVCVVVDRDG

AT5G43420.1 RING/U-box superfamily protein1.2e-1041.98Show/hide
Query:  IFIYGGGDEEEGGEKECVICLCEIEKGEKCRRMSTCSHVFHKDCIDRWVMVERHCPLCRSCVCVVVDRDGKPTASSSSSSS
        +F   G +EEE   +EC +CL E +  EK R +  CSH+FH DCID W+    +CPLCR+ V    D    P   S+ S+S
Subjt:  IFIYGGGDEEEGGEKECVICLCEIEKGEKCRRMSTCSHVFHKDCIDRWVMVERHCPLCRSCVCVVVDRDGKPTASSSSSSS

AT5G58580.1 TOXICOS EN LEVADURA 632.9e-1237.5Show/hide
Query:  DDELSETVEIEAPIFIYGGGDEEEGGEKECVICLCEIEKGEKCRRMSTCSHVFHKDCIDRWVMVERHCPLCRSCVCVVV-DRDGKPTASSSSSSSSSSSS
        D  L  +V    P+F+Y   +EEE  E+ECVICL   E G+  R++  C H FH +CID W+     CPLCRS V   V D +    A ++    +    
Subjt:  DDELSETVEIEAPIFIYGGGDEEEGGEKECVICLCEIEKGEKCRRMSTCSHVFHKDCIDRWVMVERHCPLCRSCVCVVV-DRDGKPTASSSSSSSSSSSS

Query:  EFSP
        + SP
Subjt:  EFSP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGCGGCAAATTTTTTCAATACCCCTAATGATTTTTCCAACTTCCGTTCCATCAACATTCTCTCCGCCGTCGTCGTCGCCGTCACCGTCACCGCCACCGCCATCGCC
GTCGCCATCGCATTCACTATTTGGACTGCCTCCATACGTTGAGTTTTTGGGTATAGTTTTCATATTCATCCTCTTCATAATCTATTTCTTCCTTCTCAAATTGATCTGTA
CCACCTATATATCCCACGACGACGAGTTATCGGAGACTGTAGAGATCGAAGCGCCGATTTTCATTTACGGCGGCGGCGACGAGGAGGAGGGCGGCGAAAAAGAATGTGTG
ATTTGTCTTTGCGAGATTGAAAAAGGAGAAAAGTGTAGGAGGATGAGCACGTGCAGTCACGTGTTTCATAAGGATTGCATTGACCGGTGGGTTATGGTGGAGCGTCACTG
CCCGCTTTGCCGGAGTTGTGTTTGTGTGGTGGTTGATCGTGATGGAAAACCGACGGCTTCTTCTTCTTCTTCTTCTTCTTCTTCATCTTCTTCTGAATTCAGTCCAAATC
TTCTTCTTCCCCTCAACCCTTTGTGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCGCGGCAAATTTTTTCAATACCCCTAATGATTTTTCCAACTTCCGTTCCATCAACATTCTCTCCGCCGTCGTCGTCGCCGTCACCGTCACCGCCACCGCCATCGCC
GTCGCCATCGCATTCACTATTTGGACTGCCTCCATACGTTGAGTTTTTGGGTATAGTTTTCATATTCATCCTCTTCATAATCTATTTCTTCCTTCTCAAATTGATCTGTA
CCACCTATATATCCCACGACGACGAGTTATCGGAGACTGTAGAGATCGAAGCGCCGATTTTCATTTACGGCGGCGGCGACGAGGAGGAGGGCGGCGAAAAAGAATGTGTG
ATTTGTCTTTGCGAGATTGAAAAAGGAGAAAAGTGTAGGAGGATGAGCACGTGCAGTCACGTGTTTCATAAGGATTGCATTGACCGGTGGGTTATGGTGGAGCGTCACTG
CCCGCTTTGCCGGAGTTGTGTTTGTGTGGTGGTTGATCGTGATGGAAAACCGACGGCTTCTTCTTCTTCTTCTTCTTCTTCTTCATCTTCTTCTGAATTCAGTCCAAATC
TTCTTCTTCCCCTCAACCCTTTGTGCTGA
Protein sequenceShow/hide protein sequence
MSRQIFSIPLMIFPTSVPSTFSPPSSSPSPSPPPPSPSPSHSLFGLPPYVEFLGIVFIFILFIIYFFLLKLICTTYISHDDELSETVEIEAPIFIYGGGDEEEGGEKECV
ICLCEIEKGEKCRRMSTCSHVFHKDCIDRWVMVERHCPLCRSCVCVVVDRDGKPTASSSSSSSSSSSSEFSPNLLLPLNPLC