; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0006459 (gene) of Snake gourd v1 genome

Gene IDTan0006459
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationLG09:8851125..8851676
RNA-Seq ExpressionTan0006459
SyntenyTan0006459
Gene Ontology termsGO:0006310 - DNA recombination (biological process)
GO:0015074 - DNA integration (biological process)
GO:0071897 - DNA biosynthetic process (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0003723 - RNA binding (molecular function)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_031737053.1 uncharacterized protein LOC116402138 [Cucumis sativus]6.5e-7276.09Show/hide
Query:  MVDVDPDERMAEMERKINLLMKAVEERDLEIAYLKSQVQNNETVESSQTPAVRNNDKGKNIIQEEQPPQPA-SVASLSVQQLQDMIMSSINAQYGGPAQN
        M DV  +  MAEMERKINLLMK V+ERD EIA LK Q+Q  ET ESSQTP V+ +DKGKN++QE QP Q + SVASLSVQQLQDMI SSI AQYGGP+Q 
Subjt:  MVDVDPDERMAEMERKINLLMKAVEERDLEIAYLKSQVQNNETVESSQTPAVRNNDKGKNIIQEEQPPQPA-SVASLSVQQLQDMIMSSINAQYGGPAQN

Query:  PLTYSKPYTKRIDNLRMPTGYQPPKFQQFDGKGNPKQHVAHFIETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLEPKTIDCWE
           YSKPYTKRIDNLRMP GYQPPKFQQFDGKGNPKQHVAHF+ETCENAG+RGD LV+QFVR+LKGNAF+WYTDLEP++I+ WE
Subjt:  PLTYSKPYTKRIDNLRMPTGYQPPKFQQFDGKGNPKQHVAHFIETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLEPKTIDCWE

XP_031739134.1 uncharacterized protein LOC116402863 [Cucumis sativus]6.5e-7276.09Show/hide
Query:  MVDVDPDERMAEMERKINLLMKAVEERDLEIAYLKSQVQNNETVESSQTPAVRNNDKGKNIIQEEQPPQPA-SVASLSVQQLQDMIMSSINAQYGGPAQN
        M DV  +  MAEMERKINLLMK V+ERD EIA LK Q+Q  ET ESSQTP V+ +DKGKN++QE QP Q + SVASLSVQQLQDMI SSI AQYGGP+Q 
Subjt:  MVDVDPDERMAEMERKINLLMKAVEERDLEIAYLKSQVQNNETVESSQTPAVRNNDKGKNIIQEEQPPQPA-SVASLSVQQLQDMIMSSINAQYGGPAQN

Query:  PLTYSKPYTKRIDNLRMPTGYQPPKFQQFDGKGNPKQHVAHFIETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLEPKTIDCWE
           YSKPYTKRIDNLRMP GYQPPKFQQFDGKGNPKQHVAHF+ETCENAG+RGD LV+QFVR+LKGNAF+WYTDLEP++I+ WE
Subjt:  PLTYSKPYTKRIDNLRMPTGYQPPKFQQFDGKGNPKQHVAHFIETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLEPKTIDCWE

XP_031740568.1 uncharacterized protein LOC116403508 [Cucumis sativus]6.5e-7276.09Show/hide
Query:  MVDVDPDERMAEMERKINLLMKAVEERDLEIAYLKSQVQNNETVESSQTPAVRNNDKGKNIIQEEQPPQPA-SVASLSVQQLQDMIMSSINAQYGGPAQN
        M DV  +  MAEMERKINLLMK V+ERD EIA LK Q+Q  ET ESSQTP V+ +DKGKN++QE QP Q + SVASLSVQQLQDMI SSI AQYGGP+Q 
Subjt:  MVDVDPDERMAEMERKINLLMKAVEERDLEIAYLKSQVQNNETVESSQTPAVRNNDKGKNIIQEEQPPQPA-SVASLSVQQLQDMIMSSINAQYGGPAQN

Query:  PLTYSKPYTKRIDNLRMPTGYQPPKFQQFDGKGNPKQHVAHFIETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLEPKTIDCWE
           YSKPYTKRIDNLRMP GYQPPKFQQFDGKGNPKQHVAHF+ETCENAG+RGD LV+QFVR+LKGNAF+WYTDLEP++I+ WE
Subjt:  PLTYSKPYTKRIDNLRMPTGYQPPKFQQFDGKGNPKQHVAHFIETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLEPKTIDCWE

XP_031742032.1 uncharacterized protein LOC116404025 [Cucumis sativus]6.5e-7276.09Show/hide
Query:  MVDVDPDERMAEMERKINLLMKAVEERDLEIAYLKSQVQNNETVESSQTPAVRNNDKGKNIIQEEQPPQPA-SVASLSVQQLQDMIMSSINAQYGGPAQN
        M DV  +  MAEMERKINLLMK V+ERD EIA LK Q+Q  ET ESSQTP V+ +DKGKN++QE QP Q + SVASLSVQQLQDMI SSI AQYGGP+Q 
Subjt:  MVDVDPDERMAEMERKINLLMKAVEERDLEIAYLKSQVQNNETVESSQTPAVRNNDKGKNIIQEEQPPQPA-SVASLSVQQLQDMIMSSINAQYGGPAQN

Query:  PLTYSKPYTKRIDNLRMPTGYQPPKFQQFDGKGNPKQHVAHFIETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLEPKTIDCWE
           YSKPYTKRIDNLRMP GYQPPKFQQFDGKGNPKQHVAHF+ETCENAG+RGD LV+QFVR+LKGNAF+WYTDLEP++I+ WE
Subjt:  PLTYSKPYTKRIDNLRMPTGYQPPKFQQFDGKGNPKQHVAHFIETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLEPKTIDCWE

XP_031744658.1 uncharacterized protein LOC116405107 [Cucumis sativus]6.5e-7276.09Show/hide
Query:  MVDVDPDERMAEMERKINLLMKAVEERDLEIAYLKSQVQNNETVESSQTPAVRNNDKGKNIIQEEQPPQPA-SVASLSVQQLQDMIMSSINAQYGGPAQN
        M DV  +  MAEMERKINLLMK V+ERD EIA LK Q+Q  ET ESSQTP V+ +DKGKN++QE QP Q + SVASLSVQQLQDMI SSI AQYGGP+Q 
Subjt:  MVDVDPDERMAEMERKINLLMKAVEERDLEIAYLKSQVQNNETVESSQTPAVRNNDKGKNIIQEEQPPQPA-SVASLSVQQLQDMIMSSINAQYGGPAQN

Query:  PLTYSKPYTKRIDNLRMPTGYQPPKFQQFDGKGNPKQHVAHFIETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLEPKTIDCWE
           YSKPYTKRIDNLRMP GYQPPKFQQFDGKGNPKQHVAHF+ETCENAG+RGD LV+QFVR+LKGNAF+WYTDLEP++I+ WE
Subjt:  PLTYSKPYTKRIDNLRMPTGYQPPKFQQFDGKGNPKQHVAHFIETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLEPKTIDCWE

TrEMBL top hitse value%identityAlignment
A0A5A7SU65 Ty3-gypsy retrotransposon protein6.5e-7074.46Show/hide
Query:  MVDVDPDERMAEMERKINLLMKAVEERDLEIAYLKSQVQNNETVESSQTPAVRNNDKGKNIIQEEQPPQPA-SVASLSVQQLQDMIMSSINAQYGGPAQN
        MVDV  +  MA+MERKIN LMK VEERD EIA LK Q++  ET ESSQTP V+  DK KN++QE QP Q + SVASLSVQQLQDMI +SI AQYGGP Q 
Subjt:  MVDVDPDERMAEMERKINLLMKAVEERDLEIAYLKSQVQNNETVESSQTPAVRNNDKGKNIIQEEQPPQPA-SVASLSVQQLQDMIMSSINAQYGGPAQN

Query:  PLTYSKPYTKRIDNLRMPTGYQPPKFQQFDGKGNPKQHVAHFIETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLEPKTIDCWE
           YSKPYTKRIDNLRMP GYQPPKFQQFDGKGNPKQH+AHF+ETCENAG+RGD LV+QFVR+LKGNAF+WYTDLEP+ ID WE
Subjt:  PLTYSKPYTKRIDNLRMPTGYQPPKFQQFDGKGNPKQHVAHFIETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLEPKTIDCWE

A0A5A7TZU9 Ribonuclease H8.5e-7072.83Show/hide
Query:  MVDVDPDE-RMAEMERKINLLMKAVEERDLEIAYLKSQVQNNETVESSQTPAVRNNDKGKNIIQEEQPPQPASVASLSVQQLQDMIMSSINAQYGGPAQN
        + DVD  E RMAE+E+K+N+LMKAVEERD EIA LK+ +++ +  ESS T  ++N +KGK I+QE QP    S+ASLSVQQLQ+MI +SI  QYGGPAQ 
Subjt:  MVDVDPDE-RMAEMERKINLLMKAVEERDLEIAYLKSQVQNNETVESSQTPAVRNNDKGKNIIQEEQPPQPASVASLSVQQLQDMIMSSINAQYGGPAQN

Query:  PLTYSKPYTKRIDNLRMPTGYQPPKFQQFDGKGNPKQHVAHFIETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLEPKTIDCWE
           YSKPYTKRIDN+RMP GYQPPKFQQFDGKGNPKQHVAHFIETCE AGTRGDLLVKQFVRTLKGNAFDWYTDLEP++ID WE
Subjt:  PLTYSKPYTKRIDNLRMPTGYQPPKFQQFDGKGNPKQHVAHFIETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLEPKTIDCWE

A0A5D3BZH8 Ty3-gypsy retrotransposon protein1.1e-6975.54Show/hide
Query:  MVDVDPDERMAEMERKINLLMKAVEERDLEIAYLKSQVQNNETVESSQTPAVRNNDKGKNIIQEEQPPQPA-SVASLSVQQLQDMIMSSINAQYGGPAQN
        MVDV  +  MAEMERKIN LMK VEERD EIA LK Q++  ET ESSQTP V+  DKGKN++QE QP Q + SVASLSVQQLQDMI +SI AQYGGP Q 
Subjt:  MVDVDPDERMAEMERKINLLMKAVEERDLEIAYLKSQVQNNETVESSQTPAVRNNDKGKNIIQEEQPPQPA-SVASLSVQQLQDMIMSSINAQYGGPAQN

Query:  PLTYSKPYTKRIDNLRMPTGYQPPKFQQFDGKGNPKQHVAHFIETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLEPKTIDCWE
           YSKPYTKRIDNLRMP GYQPPKFQQFDGKGNPKQH+A F+ETCENA +RGD LVKQFVRTLKGNAFDWY DLEP++ID WE
Subjt:  PLTYSKPYTKRIDNLRMPTGYQPPKFQQFDGKGNPKQHVAHFIETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLEPKTIDCWE

A0A5D3D4X3 Ty3-gypsy retrotransposon protein1.1e-6972.83Show/hide
Query:  MVDVDPDE-RMAEMERKINLLMKAVEERDLEIAYLKSQVQNNETVESSQTPAVRNNDKGKNIIQEEQPPQPASVASLSVQQLQDMIMSSINAQYGGPAQN
        + DVD  E RMAE+E+K+N+LMK VEERD EIA+LK+ +++ +  ESS    V+N DKGK ++QE QP    S+ASLSVQQLQ+MI SSI  QYGGPAQ 
Subjt:  MVDVDPDE-RMAEMERKINLLMKAVEERDLEIAYLKSQVQNNETVESSQTPAVRNNDKGKNIIQEEQPPQPASVASLSVQQLQDMIMSSINAQYGGPAQN

Query:  PLTYSKPYTKRIDNLRMPTGYQPPKFQQFDGKGNPKQHVAHFIETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLEPKTIDCWE
           YSKPYTKRIDNLRMP GYQPPKFQQFDGKGNPKQHVAHFIETCE AGTRGDLLVKQFVRTLKGNAFDWY DLEP++ID WE
Subjt:  PLTYSKPYTKRIDNLRMPTGYQPPKFQQFDGKGNPKQHVAHFIETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLEPKTIDCWE

A0A5D3DIN4 Ty3-gypsy retrotransposon protein5.0e-7073.37Show/hide
Query:  MVDVDPDERMAEMERKINLLMKAVEERDLEIAYLKSQVQNNETVESSQTPAVRNNDKGKNIIQEEQPPQPA-SVASLSVQQLQDMIMSSINAQYGGPAQN
        MVDV  +  M EME+KIN LMK VEERD EIA LK Q++  ET ESS+TP V+  DKGKN++QE QP Q + SVASLSVQQLQDMI++SI AQYGGP+Q 
Subjt:  MVDVDPDERMAEMERKINLLMKAVEERDLEIAYLKSQVQNNETVESSQTPAVRNNDKGKNIIQEEQPPQPA-SVASLSVQQLQDMIMSSINAQYGGPAQN

Query:  PLTYSKPYTKRIDNLRMPTGYQPPKFQQFDGKGNPKQHVAHFIETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLEPKTIDCWE
           YSKPYTKRIDNLRMP GYQPPKFQQFDGKGNPKQH+AHF+E CENAG+RGD LV+QFVR+LKGNAF+WYTDLEP+ ID WE
Subjt:  PLTYSKPYTKRIDNLRMPTGYQPPKFQQFDGKGNPKQHVAHFIETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLEPKTIDCWE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTGATGTGGACCCTGATGAAAGAATGGCGGAGATGGAAAGAAAGATCAACCTCTTGATGAAGGCAGTAGAAGAAAGAGATCTTGAAATCGCCTATCTCAAAAGTCA
AGTCCAAAACAATGAAACGGTTGAATCTAGCCAAACCCCTGCAGTAAGAAACAACGACAAGGGAAAAAATATTATCCAAGAGGAGCAACCGCCTCAACCAGCTTCAGTTG
CTTCTTTATCTGTCCAACAACTACAAGACATGATCATGAGTTCTATCAATGCTCAATATGGCGGACCCGCTCAAAATCCTCTCACGTACTCCAAACCGTACACTAAGAGA
ATTGACAACTTGAGGATGCCCACAGGATACCAACCTCCAAAATTCCAACAGTTCGATGGGAAGGGCAACCCAAAGCAACACGTTGCACACTTCATTGAGACTTGCGAAAA
TGCAGGGACACGTGGTGACCTCCTGGTCAAGCAATTTGTGCGTACCTTAAAAGGAAATGCCTTTGATTGGTACACTGATTTAGAGCCAAAAACGATTGACTGTTGGGAAT
AG
mRNA sequenceShow/hide mRNA sequence
ATGGTTGATGTGGACCCTGATGAAAGAATGGCGGAGATGGAAAGAAAGATCAACCTCTTGATGAAGGCAGTAGAAGAAAGAGATCTTGAAATCGCCTATCTCAAAAGTCA
AGTCCAAAACAATGAAACGGTTGAATCTAGCCAAACCCCTGCAGTAAGAAACAACGACAAGGGAAAAAATATTATCCAAGAGGAGCAACCGCCTCAACCAGCTTCAGTTG
CTTCTTTATCTGTCCAACAACTACAAGACATGATCATGAGTTCTATCAATGCTCAATATGGCGGACCCGCTCAAAATCCTCTCACGTACTCCAAACCGTACACTAAGAGA
ATTGACAACTTGAGGATGCCCACAGGATACCAACCTCCAAAATTCCAACAGTTCGATGGGAAGGGCAACCCAAAGCAACACGTTGCACACTTCATTGAGACTTGCGAAAA
TGCAGGGACACGTGGTGACCTCCTGGTCAAGCAATTTGTGCGTACCTTAAAAGGAAATGCCTTTGATTGGTACACTGATTTAGAGCCAAAAACGATTGACTGTTGGGAAT
AG
Protein sequenceShow/hide protein sequence
MVDVDPDERMAEMERKINLLMKAVEERDLEIAYLKSQVQNNETVESSQTPAVRNNDKGKNIIQEEQPPQPASVASLSVQQLQDMIMSSINAQYGGPAQNPLTYSKPYTKR
IDNLRMPTGYQPPKFQQFDGKGNPKQHVAHFIETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLEPKTIDCWE