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Tan0006476 (gene) of Snake gourd v1 genome

Gene IDTan0006476
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionMADS-box protein AGL42-like
Genome locationLG07:5409800..5425963
RNA-Seq ExpressionTan0006476
SyntenyTan0006476
Gene Ontology termsGO:0009838 - abscission (biological process)
GO:0009909 - regulation of flower development (biological process)
GO:0010150 - leaf senescence (biological process)
GO:0045944 - positive regulation of transcription by RNA polymerase II (biological process)
GO:0080187 - floral organ senescence (biological process)
GO:0005634 - nucleus (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0000978 - RNA polymerase II proximal promoter sequence-specific DNA binding (molecular function)
GO:0000981 - DNA-binding transcription factor activity, RNA polymerase II-specific (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR002487 - Transcription factor, K-box


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6579670.1 MADS-box protein AGL42, partial [Cucurbita argyrosperma subsp. sororia]1.8e-2883.95Show/hide
Query:  MQKSIERYRKYGKDGQTNTFRSEGYMQQLKQEADMTAKKIEQLQSSQQKLLGRGLDSCSFEEIREIERQLILSLTRIRERK
        MQK+IERYRKYGK G+TNTF+SEGYMQQ++QEA+MTAKKIE+L+ SQ+KLLGRGLDSCSFEE+REIE+QLILSLTRIRERK
Subjt:  MQKSIERYRKYGKDGQTNTFRSEGYMQQLKQEADMTAKKIEQLQSSQQKLLGRGLDSCSFEEIREIERQLILSLTRIRERK

KGN49884.2 hypothetical protein Csa_000572 [Cucumis sativus]1.6e-2988.89Show/hide
Query:  MQKSIERYRKYGKDGQTNTFRSEGYMQQLKQEADMTAKKIEQLQSSQQKLLGRGLDSCSFEEIREIERQLILSLTRIRERK
        MQK+IERYRK+GKDGQ+N FRSEGYMQQLKQEA+MTAKKIEQL+ SQQKLLGRGLDSCSFEEIREIERQL+LSLTRIRE K
Subjt:  MQKSIERYRKYGKDGQTNTFRSEGYMQQLKQEADMTAKKIEQLQSSQQKLLGRGLDSCSFEEIREIERQLILSLTRIRERK

XP_004143644.1 MADS-box protein AGL42 isoform X1 [Cucumis sativus]1.6e-2988.89Show/hide
Query:  MQKSIERYRKYGKDGQTNTFRSEGYMQQLKQEADMTAKKIEQLQSSQQKLLGRGLDSCSFEEIREIERQLILSLTRIRERK
        MQK+IERYRK+GKDGQ+N FRSEGYMQQLKQEA+MTAKKIEQL+ SQQKLLGRGLDSCSFEEIREIERQL+LSLTRIRE K
Subjt:  MQKSIERYRKYGKDGQTNTFRSEGYMQQLKQEADMTAKKIEQLQSSQQKLLGRGLDSCSFEEIREIERQLILSLTRIRERK

XP_008467251.1 PREDICTED: MADS-box protein AGL42-like [Cucumis melo]7.9e-2986.42Show/hide
Query:  MQKSIERYRKYGKDGQTNTFRSEGYMQQLKQEADMTAKKIEQLQSSQQKLLGRGLDSCSFEEIREIERQLILSLTRIRERK
        MQK+IERYRK+GK+GQ+N FRSEGYMQQLKQEA+MTAKKIEQL+ SQQKLLGRGLDSCSFEE+REIERQL+LSLTRIRE K
Subjt:  MQKSIERYRKYGKDGQTNTFRSEGYMQQLKQEADMTAKKIEQLQSSQQKLLGRGLDSCSFEEIREIERQLILSLTRIRERK

XP_011654887.1 MADS-box protein AGL42 isoform X2 [Cucumis sativus]1.6e-2988.89Show/hide
Query:  MQKSIERYRKYGKDGQTNTFRSEGYMQQLKQEADMTAKKIEQLQSSQQKLLGRGLDSCSFEEIREIERQLILSLTRIRERK
        MQK+IERYRK+GKDGQ+N FRSEGYMQQLKQEA+MTAKKIEQL+ SQQKLLGRGLDSCSFEEIREIERQL+LSLTRIRE K
Subjt:  MQKSIERYRKYGKDGQTNTFRSEGYMQQLKQEADMTAKKIEQLQSSQQKLLGRGLDSCSFEEIREIERQLILSLTRIRERK

TrEMBL top hitse value%identityAlignment
A0A0A0KL39 Uncharacterized protein7.7e-3088.89Show/hide
Query:  MQKSIERYRKYGKDGQTNTFRSEGYMQQLKQEADMTAKKIEQLQSSQQKLLGRGLDSCSFEEIREIERQLILSLTRIRERK
        MQK+IERYRK+GKDGQ+N FRSEGYMQQLKQEA+MTAKKIEQL+ SQQKLLGRGLDSCSFEEIREIERQL+LSLTRIRE K
Subjt:  MQKSIERYRKYGKDGQTNTFRSEGYMQQLKQEADMTAKKIEQLQSSQQKLLGRGLDSCSFEEIREIERQLILSLTRIRERK

A0A1S4E646 MADS-box protein AGL42-like3.8e-2986.42Show/hide
Query:  MQKSIERYRKYGKDGQTNTFRSEGYMQQLKQEADMTAKKIEQLQSSQQKLLGRGLDSCSFEEIREIERQLILSLTRIRERK
        MQK+IERYRK+GK+GQ+N FRSEGYMQQLKQEA+MTAKKIEQL+ SQQKLLGRGLDSCSFEE+REIERQL+LSLTRIRE K
Subjt:  MQKSIERYRKYGKDGQTNTFRSEGYMQQLKQEADMTAKKIEQLQSSQQKLLGRGLDSCSFEEIREIERQLILSLTRIRERK

A0A6J1BPQ9 MADS-box protein AGL42-like isoform X21.9e-2886.42Show/hide
Query:  MQKSIERYRKYGKDGQTNTFRSEGYMQQLKQEADMTAKKIEQLQSSQQKLLGRGLDSCSFEEIREIERQLILSLTRIRERK
        MQKSIERY KYGKDGQTN FRSEGYMQQLKQEA+MTAKKIE L++SQQKLLGRGLDSCS +E+REIERQL LSL+RIRERK
Subjt:  MQKSIERYRKYGKDGQTNTFRSEGYMQQLKQEADMTAKKIEQLQSSQQKLLGRGLDSCSFEEIREIERQLILSLTRIRERK

A0A6J1BSU4 MADS-box protein AGL42-like isoform X11.9e-2886.42Show/hide
Query:  MQKSIERYRKYGKDGQTNTFRSEGYMQQLKQEADMTAKKIEQLQSSQQKLLGRGLDSCSFEEIREIERQLILSLTRIRERK
        MQKSIERY KYGKDGQTN FRSEGYMQQLKQEA+MTAKKIE L++SQQKLLGRGLDSCS +E+REIERQL LSL+RIRERK
Subjt:  MQKSIERYRKYGKDGQTNTFRSEGYMQQLKQEADMTAKKIEQLQSSQQKLLGRGLDSCSFEEIREIERQLILSLTRIRERK

A0A6J1I2F0 MADS-box protein AGL42-like8.5e-2983.95Show/hide
Query:  MQKSIERYRKYGKDGQTNTFRSEGYMQQLKQEADMTAKKIEQLQSSQQKLLGRGLDSCSFEEIREIERQLILSLTRIRERK
        MQK+IERYRK+GK G+TNTF+SEGYMQQ+KQEA+MTAKKIE+L+ SQ+KLLGRGLDSCSFEE+REIE+QLILSLTRIRERK
Subjt:  MQKSIERYRKYGKDGQTNTFRSEGYMQQLKQEADMTAKKIEQLQSSQQKLLGRGLDSCSFEEIREIERQLILSLTRIRERK

SwissProt top hitse value%identityAlignment
O64645 MADS-box protein SOC11.3e-1049.38Show/hide
Query:  MQKSIERYRKYGKDGQTNTFRSEGYMQQLKQEADMTAKKIEQLQSSQQKLLGRGLDSCSFEEIREIERQLILSLTRIRERK
        MQ +I+RY ++ KD  +    SE  MQ LK EA    KKIEQL++S++KLLG G+ +CS EE+++IE+QL  S+  IR RK
Subjt:  MQKSIERYRKYGKDGQTNTFRSEGYMQQLKQEADMTAKKIEQLQSSQQKLLGRGLDSCSFEEIREIERQLILSLTRIRERK

O82743 Agamous-like MADS-box protein AGL195.5e-0946.15Show/hide
Query:  SIERYRKYGKDGQTNTFRSEGYMQQLKQEADMTAKKIEQLQSSQQKLLGRGLDSCSFEEIREIERQLILSLTRIRERK
        +IERY++  K+   N  R++   QQ + E     KKIEQL+ S++KLLG G+D+CS EE++++E QL  SL+RIR +K
Subjt:  SIERYRKYGKDGQTNTFRSEGYMQQLKQEADMTAKKIEQLQSSQQKLLGRGLDSCSFEEIREIERQLILSLTRIRERK

Q9FIS1 MADS-box protein AGL424.0e-1555.56Show/hide
Query:  MQKSIERYRKYGKDGQTNTFRSEGYMQQLKQEADMTAKKIEQLQSSQQKLLGRGLDSCSFEEIREIERQLILSLTRIRERK
        MQK+IERYRKY KD +T+   S+ ++QQLKQEA     KIE L+  ++KLLG+G+ SCS EE++EI+ QL  SL ++RERK
Subjt:  MQKSIERYRKYGKDGQTNTFRSEGYMQQLKQEADMTAKKIEQLQSSQQKLLGRGLDSCSFEEIREIERQLILSLTRIRERK

Q9LT93 MADS-box protein AGL711.2e-0843.68Show/hide
Query:  MQKSIERYRKYGKDGQTNTF------RSEGYMQQLKQEADMTAKKIEQLQSSQQKLLGRGLDSCSFEEIREIERQLILSLTRIRERK
        M+K I+RY K+     +N F      + E Y+Q+LK E D   KKI+ L+   +KLLG+GLDSCS  E++EI+ Q+  SL  +R RK
Subjt:  MQKSIERYRKYGKDGQTNTF------RSEGYMQQLKQEADMTAKKIEQLQSSQQKLLGRGLDSCSFEEIREIERQLILSLTRIRERK

Q9XJ60 MADS-box transcription factor 502.7e-0846.25Show/hide
Query:  QKSIERYRKYGKDGQTNTFRSEGYMQQLKQEADMTAKKIEQLQSSQQKLLGRGLDSCSFEEIREIERQLILSLTRIRERK
        QK+IERYR Y K+   N    +  ++Q+K +AD  AKK+E L++ ++KLLG  LD CS EE+  +E +L  SL  IR RK
Subjt:  QKSIERYRKYGKDGQTNTFRSEGYMQQLKQEADMTAKKIEQLQSSQQKLLGRGLDSCSFEEIREIERQLILSLTRIRERK

Arabidopsis top hitse value%identityAlignment
AT2G45660.1 AGAMOUS-like 209.4e-1249.38Show/hide
Query:  MQKSIERYRKYGKDGQTNTFRSEGYMQQLKQEADMTAKKIEQLQSSQQKLLGRGLDSCSFEEIREIERQLILSLTRIRERK
        MQ +I+RY ++ KD  +    SE  MQ LK EA    KKIEQL++S++KLLG G+ +CS EE+++IE+QL  S+  IR RK
Subjt:  MQKSIERYRKYGKDGQTNTFRSEGYMQQLKQEADMTAKKIEQLQSSQQKLLGRGLDSCSFEEIREIERQLILSLTRIRERK

AT5G62165.1 AGAMOUS-like 422.8e-1655.56Show/hide
Query:  MQKSIERYRKYGKDGQTNTFRSEGYMQQLKQEADMTAKKIEQLQSSQQKLLGRGLDSCSFEEIREIERQLILSLTRIRERK
        MQK+IERYRKY KD +T+   S+ ++QQLKQEA     KIE L+  ++KLLG+G+ SCS EE++EI+ QL  SL ++RERK
Subjt:  MQKSIERYRKYGKDGQTNTFRSEGYMQQLKQEADMTAKKIEQLQSSQQKLLGRGLDSCSFEEIREIERQLILSLTRIRERK

AT5G62165.2 AGAMOUS-like 422.8e-1655.56Show/hide
Query:  MQKSIERYRKYGKDGQTNTFRSEGYMQQLKQEADMTAKKIEQLQSSQQKLLGRGLDSCSFEEIREIERQLILSLTRIRERK
        MQK+IERYRKY KD +T+   S+ ++QQLKQEA     KIE L+  ++KLLG+G+ SCS EE++EI+ QL  SL ++RERK
Subjt:  MQKSIERYRKYGKDGQTNTFRSEGYMQQLKQEADMTAKKIEQLQSSQQKLLGRGLDSCSFEEIREIERQLILSLTRIRERK

AT5G62165.3 AGAMOUS-like 422.8e-1655.56Show/hide
Query:  MQKSIERYRKYGKDGQTNTFRSEGYMQQLKQEADMTAKKIEQLQSSQQKLLGRGLDSCSFEEIREIERQLILSLTRIRERK
        MQK+IERYRKY KD +T+   S+ ++QQLKQEA     KIE L+  ++KLLG+G+ SCS EE++EI+ QL  SL ++RERK
Subjt:  MQKSIERYRKYGKDGQTNTFRSEGYMQQLKQEADMTAKKIEQLQSSQQKLLGRGLDSCSFEEIREIERQLILSLTRIRERK

AT5G62165.4 AGAMOUS-like 422.2e-1654.88Show/hide
Query:  MQKSIERYRKYGKDGQTNTFRSEGYMQQLKQEADMTAKKIEQLQSSQQKLLGRGLDSCSFEEIREIERQLILSLTRIRERKK
        MQK+IERYRKY KD +T+   S+ ++QQLKQEA     KIE L+  ++KLLG+G+ SCS EE++EI+ QL  SL ++RERK+
Subjt:  MQKSIERYRKYGKDGQTNTFRSEGYMQQLKQEADMTAKKIEQLQSSQQKLLGRGLDSCSFEEIREIERQLILSLTRIRERKK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAAAGTCAATCGAACGCTACCGCAAGTATGGAAAAGATGGACAGACCAACACTTTTCGCTCGGAAGGATACATGCAGCAACTGAAGCAGGAAGCTGACATGACGGC
AAAGAAAATCGAGCAACTTCAAAGTTCACAACAGAAGCTTTTGGGACGTGGCTTGGATTCTTGTTCCTTTGAGGAAATTCGAGAGATTGAAAGACAGTTGATACTGAGCT
TAACCCGTATTAGAGAAAGAAAGAAATGTCACGGTCAAGTCAATTTCTCCAAGGAAAAGAGTGGTTCGTAG
mRNA sequenceShow/hide mRNA sequence
ATGCAAAAGTCAATCGAACGCTACCGCAAGTATGGAAAAGATGGACAGACCAACACTTTTCGCTCGGAAGGATACATGCAGCAACTGAAGCAGGAAGCTGACATGACGGC
AAAGAAAATCGAGCAACTTCAAAGTTCACAACAGAAGCTTTTGGGACGTGGCTTGGATTCTTGTTCCTTTGAGGAAATTCGAGAGATTGAAAGACAGTTGATACTGAGCT
TAACCCGTATTAGAGAAAGAAAGAAATGTCACGGTCAAGTCAATTTCTCCAAGGAAAAGAGTGGTTCGTAGAGGCTTTCACTCCGGACGAGGAGATCACGTGACGGTCAC
ACTCCATTGGTCGAAGTAACATCGTGGGACCACATTGACTCCTGTGCTGTCGGATTCTGATTGGTCCTTCACGCACGAAATTGTACGGCAATAACCTTTTTATCATCCAT
TAACACAACCTTTCAAACTGAACTTAGGAAGCCA
Protein sequenceShow/hide protein sequence
MQKSIERYRKYGKDGQTNTFRSEGYMQQLKQEADMTAKKIEQLQSSQQKLLGRGLDSCSFEEIREIERQLILSLTRIRERKKCHGQVNFSKEKSGS