; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0006482 (gene) of Snake gourd v1 genome

Gene IDTan0006482
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionLITAF domain-containing protein
Genome locationLG06:19538518..19541411
RNA-Seq ExpressionTan0006482
SyntenyTan0006482
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR006629 - LPS-induced tumour necrosis factor alpha factor
IPR037519 - LITAF domain containing protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039847.1 zf-LITAF-like domain-containing protein [Cucumis melo var. makuwa]2.9e-6990.98Show/hide
Query:  MSKNDEPVVGVPFYAGNNVYQAGQIPPNAIFDDPQGVPIQQTMYRDTPAPFYCVYCGNSGLTTVRSKISSAAFVGCMIPFMLGVCFLCPSMDCLWHKYHY
        MSKN EPVVGVP Y GNN YQAGQIPPNAIF DPQGVPIQQTMYRDTPAPF CVYCGNSGLTT+RSKIS AA VGCM+PFMLGVCFLCPSMDCLWHKYHY
Subjt:  MSKNDEPVVGVPFYAGNNVYQAGQIPPNAIFDDPQGVPIQQTMYRDTPAPFYCVYCGNSGLTTVRSKISSAAFVGCMIPFMLGVCFLCPSMDCLWHKYHY

Query:  CPSCKEKVGDFEKLDRCAVMDPPHWTQQSFALP
        CPSCKEKVGDFEKLDRCAVMDPPHWTQ S+ALP
Subjt:  CPSCKEKVGDFEKLDRCAVMDPPHWTQQSFALP
XP_004140553.1 GSH-induced LITAF domain protein [Cucumis sativus]2.2e-6990.98Show/hide
Query:  MSKNDEPVVGVPFYAGNNVYQAGQIPPNAIFDDPQGVPIQQTMYRDTPAPFYCVYCGNSGLTTVRSKISSAAFVGCMIPFMLGVCFLCPSMDCLWHKYHY
        MSKN EPVVGVP Y GNN YQAGQIPPNAIF DP GVPIQQTMYRDTPAPF CVYCGNSGLTT+RSKISSAA VGCM+PFMLGVCFLCPSMDCLWHKYHY
Subjt:  MSKNDEPVVGVPFYAGNNVYQAGQIPPNAIFDDPQGVPIQQTMYRDTPAPFYCVYCGNSGLTTVRSKISSAAFVGCMIPFMLGVCFLCPSMDCLWHKYHY

Query:  CPSCKEKVGDFEKLDRCAVMDPPHWTQQSFALP
        CPSCKEKVGDFEKLDRCAVMDPPHWTQ S+ALP
Subjt:  CPSCKEKVGDFEKLDRCAVMDPPHWTQQSFALP
XP_008459901.1 PREDICTED: uncharacterized protein LOC103498881 [Cucumis melo]1.1e-6890.23Show/hide
Query:  MSKNDEPVVGVPFYAGNNVYQAGQIPPNAIFDDPQGVPIQQTMYRDTPAPFYCVYCGNSGLTTVRSKISSAAFVGCMIPFMLGVCFLCPSMDCLWHKYHY
        MSKN EPVVGVP Y GNN YQAGQIPPN IF DPQGVPIQQTMYRDTPAPF CVYCGNSGLTT+RSKIS AA VGCM+PFMLGVCFLCPSMDCLWHKYHY
Subjt:  MSKNDEPVVGVPFYAGNNVYQAGQIPPNAIFDDPQGVPIQQTMYRDTPAPFYCVYCGNSGLTTVRSKISSAAFVGCMIPFMLGVCFLCPSMDCLWHKYHY

Query:  CPSCKEKVGDFEKLDRCAVMDPPHWTQQSFALP
        CPSCKEKVGDFEKLDRCAVMDPPHWTQ S+ALP
Subjt:  CPSCKEKVGDFEKLDRCAVMDPPHWTQQSFALP
XP_022148974.1 GSH-induced LITAF domain protein [Momordica charantia]2.4e-6888.06Show/hide
Query:  MSKNDEPVVGVPFYAGNNVYQAGQIPPNAIFDDPQGVPIQQTMYRDTPAPFYCVYCGNSGLTTVRSKISSAAFVGCMIPFMLGVCFLCPSMDCLWHKYHY
        MSKNDEPVVG+P YAG+N YQAGQIP NAI+ DPQGVPIQQTM+RDTPAPFYC+YCGNSGLT+VRSKISSAA VGCM+PFMLGVCFL PSM+CLWHKYHY
Subjt:  MSKNDEPVVGVPFYAGNNVYQAGQIPPNAIFDDPQGVPIQQTMYRDTPAPFYCVYCGNSGLTTVRSKISSAAFVGCMIPFMLGVCFLCPSMDCLWHKYHY

Query:  CPSCKEKVGDFEKLDRCAVMDPPHWTQQSFALPA
        CP+CKEKVGDFEKLDRCAVMDPPHWTQ SFALPA
Subjt:  CPSCKEKVGDFEKLDRCAVMDPPHWTQQSFALPA
XP_022991744.1 GSH-induced LITAF domain protein [Cucurbita maxima]5.4e-6888.06Show/hide
Query:  MSKNDEPVVGVPFYAGNNVYQAGQIPPNAIFDDPQGVPIQQTMYRDTPAPFYCVYCGNSGLTTVRSKISSAAFVGCMIPFMLGVCFLCPSMDCLWHKYHY
        MSKNDEPVVG+PFY GNN YQAGQIPPNAIF  PQGVPI QTMYRDTPAP+ CVYCGNSGLT++RSKIS AA VGCM+PFMLGVCFLCPSMDCLWHKYHY
Subjt:  MSKNDEPVVGVPFYAGNNVYQAGQIPPNAIFDDPQGVPIQQTMYRDTPAPFYCVYCGNSGLTTVRSKISSAAFVGCMIPFMLGVCFLCPSMDCLWHKYHY

Query:  CPSCKEKVGDFEKLDRCAVMDPPHWTQQSFALPA
        CPSCKEKVGDFEK D CAVMDPPHWTQ SFALPA
Subjt:  CPSCKEKVGDFEKLDRCAVMDPPHWTQQSFALPA
TrEMBL top hitse value%identityAlignment
A0A0A0KDG7 LITAF domain-containing protein1.1e-6990.98Show/hide
Query:  MSKNDEPVVGVPFYAGNNVYQAGQIPPNAIFDDPQGVPIQQTMYRDTPAPFYCVYCGNSGLTTVRSKISSAAFVGCMIPFMLGVCFLCPSMDCLWHKYHY
        MSKN EPVVGVP Y GNN YQAGQIPPNAIF DP GVPIQQTMYRDTPAPF CVYCGNSGLTT+RSKISSAA VGCM+PFMLGVCFLCPSMDCLWHKYHY
Subjt:  MSKNDEPVVGVPFYAGNNVYQAGQIPPNAIFDDPQGVPIQQTMYRDTPAPFYCVYCGNSGLTTVRSKISSAAFVGCMIPFMLGVCFLCPSMDCLWHKYHY

Query:  CPSCKEKVGDFEKLDRCAVMDPPHWTQQSFALP
        CPSCKEKVGDFEKLDRCAVMDPPHWTQ S+ALP
Subjt:  CPSCKEKVGDFEKLDRCAVMDPPHWTQQSFALP
A0A1S3CCH3 uncharacterized protein LOC1034988815.3e-6990.23Show/hide
Query:  MSKNDEPVVGVPFYAGNNVYQAGQIPPNAIFDDPQGVPIQQTMYRDTPAPFYCVYCGNSGLTTVRSKISSAAFVGCMIPFMLGVCFLCPSMDCLWHKYHY
        MSKN EPVVGVP Y GNN YQAGQIPPN IF DPQGVPIQQTMYRDTPAPF CVYCGNSGLTT+RSKIS AA VGCM+PFMLGVCFLCPSMDCLWHKYHY
Subjt:  MSKNDEPVVGVPFYAGNNVYQAGQIPPNAIFDDPQGVPIQQTMYRDTPAPFYCVYCGNSGLTTVRSKISSAAFVGCMIPFMLGVCFLCPSMDCLWHKYHY

Query:  CPSCKEKVGDFEKLDRCAVMDPPHWTQQSFALP
        CPSCKEKVGDFEKLDRCAVMDPPHWTQ S+ALP
Subjt:  CPSCKEKVGDFEKLDRCAVMDPPHWTQQSFALP
A0A5D3DMB0 Zf-LITAF-like domain-containing protein1.4e-6990.98Show/hide
Query:  MSKNDEPVVGVPFYAGNNVYQAGQIPPNAIFDDPQGVPIQQTMYRDTPAPFYCVYCGNSGLTTVRSKISSAAFVGCMIPFMLGVCFLCPSMDCLWHKYHY
        MSKN EPVVGVP Y GNN YQAGQIPPNAIF DPQGVPIQQTMYRDTPAPF CVYCGNSGLTT+RSKIS AA VGCM+PFMLGVCFLCPSMDCLWHKYHY
Subjt:  MSKNDEPVVGVPFYAGNNVYQAGQIPPNAIFDDPQGVPIQQTMYRDTPAPFYCVYCGNSGLTTVRSKISSAAFVGCMIPFMLGVCFLCPSMDCLWHKYHY

Query:  CPSCKEKVGDFEKLDRCAVMDPPHWTQQSFALP
        CPSCKEKVGDFEKLDRCAVMDPPHWTQ S+ALP
Subjt:  CPSCKEKVGDFEKLDRCAVMDPPHWTQQSFALP
A0A6J1D5M9 GSH-induced LITAF domain protein1.2e-6888.06Show/hide
Query:  MSKNDEPVVGVPFYAGNNVYQAGQIPPNAIFDDPQGVPIQQTMYRDTPAPFYCVYCGNSGLTTVRSKISSAAFVGCMIPFMLGVCFLCPSMDCLWHKYHY
        MSKNDEPVVG+P YAG+N YQAGQIP NAI+ DPQGVPIQQTM+RDTPAPFYC+YCGNSGLT+VRSKISSAA VGCM+PFMLGVCFL PSM+CLWHKYHY
Subjt:  MSKNDEPVVGVPFYAGNNVYQAGQIPPNAIFDDPQGVPIQQTMYRDTPAPFYCVYCGNSGLTTVRSKISSAAFVGCMIPFMLGVCFLCPSMDCLWHKYHY

Query:  CPSCKEKVGDFEKLDRCAVMDPPHWTQQSFALPA
        CP+CKEKVGDFEKLDRCAVMDPPHWTQ SFALPA
Subjt:  CPSCKEKVGDFEKLDRCAVMDPPHWTQQSFALPA
A0A6J1JVN9 GSH-induced LITAF domain protein2.6e-6888.06Show/hide
Query:  MSKNDEPVVGVPFYAGNNVYQAGQIPPNAIFDDPQGVPIQQTMYRDTPAPFYCVYCGNSGLTTVRSKISSAAFVGCMIPFMLGVCFLCPSMDCLWHKYHY
        MSKNDEPVVG+PFY GNN YQAGQIPPNAIF  PQGVPI QTMYRDTPAP+ CVYCGNSGLT++RSKIS AA VGCM+PFMLGVCFLCPSMDCLWHKYHY
Subjt:  MSKNDEPVVGVPFYAGNNVYQAGQIPPNAIFDDPQGVPIQQTMYRDTPAPFYCVYCGNSGLTTVRSKISSAAFVGCMIPFMLGVCFLCPSMDCLWHKYHY

Query:  CPSCKEKVGDFEKLDRCAVMDPPHWTQQSFALPA
        CPSCKEKVGDFEK D CAVMDPPHWTQ SFALPA
Subjt:  CPSCKEKVGDFEKLDRCAVMDPPHWTQQSFALPA
SwissProt top hitse value%identityAlignment
Q94CD4 GSH-induced LITAF domain protein1.2e-5469.4Show/hide
Query:  MSKNDEPVVGVPFYAGNNVYQAGQIPPNAIFDDPQGVPIQQTMYRDTPAPFYCVYCGNSGLTTVRSKISSAAFVGCMIPFMLGVCFLCPSMDCLWHKYHY
        M+K    V+GVP+YAG N YQAG +PPNAI+ DP G PIQQT+YRDTPAPF C+YCGN+GLT +RSK   AA V CM+PFMLG CFLCPSMDCLW+K H+
Subjt:  MSKNDEPVVGVPFYAGNNVYQAGQIPPNAIFDDPQGVPIQQTMYRDTPAPFYCVYCGNSGLTTVRSKISSAAFVGCMIPFMLGVCFLCPSMDCLWHKYHY

Query:  CPSCKEKVGDFEKLDRCAVMDPPHWTQQSFALPA
        CP C  KV DFEK D C VMDPP W Q SFALPA
Subjt:  CPSCKEKVGDFEKLDRCAVMDPPHWTQQSFALPA
Q9JLJ0 Lipopolysaccharide-induced tumor necrosis factor-alpha factor homolog9.8e-0427.72Show/hide
Query:  YQAGQIP-PNAIFDDPQGVPIQQTM-YRDTPAPFYCVYCGNSGLTTVRSKISSAAFVG----CMIPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEK
        Y    +P PNA     Q V +QQ + + D P    C  C    +T +     +  ++     C++  + G CF+   +D L    HYCP+CK  +G +++
Subjt:  YQAGQIP-PNAIFDDPQGVPIQQTM-YRDTPAPFYCVYCGNSGLTTVRSKISSAAFVG----CMIPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEK

Query:  L
        L
Subjt:  L
Arabidopsis top hitse value%identityAlignment
AT5G13190.1 CONTAINS InterPro DOMAIN/s: LPS-induced tumor necrosis factor alpha factor (InterPro:IPR006629); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).8.6e-5669.4Show/hide
Query:  MSKNDEPVVGVPFYAGNNVYQAGQIPPNAIFDDPQGVPIQQTMYRDTPAPFYCVYCGNSGLTTVRSKISSAAFVGCMIPFMLGVCFLCPSMDCLWHKYHY
        M+K    V+GVP+YAG N YQAG +PPNAI+ DP G PIQQT+YRDTPAPF C+YCGN+GLT +RSK   AA V CM+PFMLG CFLCPSMDCLW+K H+
Subjt:  MSKNDEPVVGVPFYAGNNVYQAGQIPPNAIFDDPQGVPIQQTMYRDTPAPFYCVYCGNSGLTTVRSKISSAAFVGCMIPFMLGVCFLCPSMDCLWHKYHY

Query:  CPSCKEKVGDFEKLDRCAVMDPPHWTQQSFALPA
        CP C  KV DFEK D C VMDPP W Q SFALPA
Subjt:  CPSCKEKVGDFEKLDRCAVMDPPHWTQQSFALPA

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGAAGAACGATGAGCCGGTCGTCGGAGTTCCATTCTATGCCGGAAACAACGTGTATCAGGCCGGACAGATCCCGCCGAACGCCATTTTTGACGATCCCCAGGGTGT
TCCTATTCAGCAAACCATGTACCGCGACACTCCTGCTCCTTTCTACTGTGTTTATTGTGGAAATTCCGGTCTTACCACCGTCAGATCAAAGATAAGTTCAGCGGCTTTCG
TTGGTTGTATGATACCATTTATGTTGGGAGTATGCTTTCTTTGTCCTTCAATGGACTGCCTTTGGCATAAGTATCACTATTGCCCCAGCTGCAAGGAAAAGGTTGGTGAT
TTTGAGAAATTGGATAGGTGTGCTGTGATGGATCCTCCACACTGGACACAGCAAAGCTTTGCATTGCCTGCTTGA
mRNA sequenceShow/hide mRNA sequence
CCGGAAGGGCGGTTTCTTGTTTCCCATTTTTCTCCAAGTCCACCTCCAAAAACTTTCCTTGACTTCCATTCCAACAACTTTCAGATTCGCCGGCAGATAGAGAGAAAATG
TCGAAGAACGATGAGCCGGTCGTCGGAGTTCCATTCTATGCCGGAAACAACGTGTATCAGGCCGGACAGATCCCGCCGAACGCCATTTTTGACGATCCCCAGGGTGTTCC
TATTCAGCAAACCATGTACCGCGACACTCCTGCTCCTTTCTACTGTGTTTATTGTGGAAATTCCGGTCTTACCACCGTCAGATCAAAGATAAGTTCAGCGGCTTTCGTTG
GTTGTATGATACCATTTATGTTGGGAGTATGCTTTCTTTGTCCTTCAATGGACTGCCTTTGGCATAAGTATCACTATTGCCCCAGCTGCAAGGAAAAGGTTGGTGATTTT
GAGAAATTGGATAGGTGTGCTGTGATGGATCCTCCACACTGGACACAGCAAAGCTTTGCATTGCCTGCTTGATTTTCATGAGCTGCTATTTTTCCGTGTGGTTACTTTGC
ATTGTCTGCAGTCAGTATTTGCTTCACTCTTGTGCTCTTTTTGAGATGTTCATGCTACACTTACGGATAGGCAAAGATTGGATATCAGTGCATATGTACAATTGTGATAG
AACCAAGTACATGTTTTTTATATCAGATTGCTTGTAAATACCTTGTTCTTACATTGGCATTACTGTTTATATACAATACTACTAGCCTAATTTGGACGAATCATTTCATA
GACCTCTTGATCATTCACCTCACAAGTCATGATTGTGTACGTTTGTCCAATTAATTTCCCGTGGCTATTCACTATCTGCATCTCCTAGCACCATTTGTTTTAGCTTCTCA
AATTACATTTTGACCATGCACCTCACCGTTTGGATGAATCATCGATGGGGTTTTCTTTTTCTTCTTTATTTGGTTATTGGAATAAAGTCAAGCATAGATGATCTGCCTGT
TTGGTTTTGATTGGACTTGAATTCTGATCATTGATGATACTATCTGGTACCACGCAAGTAAACAATGAAGAAACATCTTGGAAAAGATAATATACCTGGTTCATTGGGGC
CTTTCTCTGAAGCAGATGATGCAGGGAAAAAAAAACTCCAAGTCGATTGCCCAGGTTTTCAATCTGGAAGTGAAGGTTCAGCATGAGAAATAAGAGCCGGTCTCGATAGC
CAAAGAGACTGCCTGCAGGGTATGGCATTTGCAGGATATCTTCACTCAAACTTGATGACAGCTTTTACAGATCCCTCTTCATGGAGTTGCAGGCTGCAGGCAAGTCATCC
TTGGCTACAATACCATGACTCTCCATTCCCATGATGAACCTTCCTTCCTTTCTTCCTCATCTTCCTCATAAATCAGATAGTGAATGCCAAAGTGCAGTCCTTTTTGAACC
AAAAGGAGAATTTATGTATGTATTTGTTTGTGCATTGGAGTTTGGTTCATATGTTAAAATTAGCAGCAGCTCCACTCCACAACAATACACTGCACTCTTCAG
Protein sequenceShow/hide protein sequence
MSKNDEPVVGVPFYAGNNVYQAGQIPPNAIFDDPQGVPIQQTMYRDTPAPFYCVYCGNSGLTTVRSKISSAAFVGCMIPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGD
FEKLDRCAVMDPPHWTQQSFALPA