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Tan0006543 (gene) of Snake gourd v1 genome

Gene IDTan0006543
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationLG05:28176032..28176283
RNA-Seq ExpressionTan0006543
SyntenyTan0006543
Gene Ontology termsGO:0006310 - DNA recombination (biological process)
GO:0015074 - DNA integration (biological process)
GO:0071897 - DNA biosynthetic process (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0003723 - RNA binding (molecular function)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025354.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]7.1e-2693.33Show/hide
Query:  MPTGYQPPKFQQFDGKGNPKQHVAHFVETCENAGTRGDLLVKQFVRTLKGNAFEWYTDLE
        MP GYQPPKFQQFDGKGNPKQHVAHF+ETCE AGTRGDLLVKQFVRTLKGNAF+WYTDLE
Subjt:  MPTGYQPPKFQQFDGKGNPKQHVAHFVETCENAGTRGDLLVKQFVRTLKGNAFEWYTDLE
KAA0043322.1 uncharacterized protein E6C27_scaffold110G002330 [Cucumis melo var. makuwa]7.1e-2693.33Show/hide
Query:  MPTGYQPPKFQQFDGKGNPKQHVAHFVETCENAGTRGDLLVKQFVRTLKGNAFEWYTDLE
        MP GYQPPKFQQFDGKGNPKQHVAHF+ETCE AGTRGDLLVKQFVRTLKGNAF+WYTDLE
Subjt:  MPTGYQPPKFQQFDGKGNPKQHVAHFVETCENAGTRGDLLVKQFVRTLKGNAFEWYTDLE
KAA0047477.1 uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa]7.1e-2693.33Show/hide
Query:  MPTGYQPPKFQQFDGKGNPKQHVAHFVETCENAGTRGDLLVKQFVRTLKGNAFEWYTDLE
        MP GYQPPKFQQFDGKGNPKQHVAHF+ETCE AGTRGDLLVKQFVRTLKGNAF+WYTDLE
Subjt:  MPTGYQPPKFQQFDGKGNPKQHVAHFVETCENAGTRGDLLVKQFVRTLKGNAFEWYTDLE
KAA0053464.1 retrotransposon protein putative ty3-gypsy sub-class [Cucumis melo var. makuwa]7.1e-2693.33Show/hide
Query:  MPTGYQPPKFQQFDGKGNPKQHVAHFVETCENAGTRGDLLVKQFVRTLKGNAFEWYTDLE
        MP GYQPPKFQQFDGKGNPKQHVAHF+ETCE AGTRGDLLVKQFVRTLKGNAF+WYTDLE
Subjt:  MPTGYQPPKFQQFDGKGNPKQHVAHFVETCENAGTRGDLLVKQFVRTLKGNAFEWYTDLE
KAA0059770.1 retrotransposon gag protein [Cucumis melo var. makuwa]9.2e-2693.33Show/hide
Query:  MPTGYQPPKFQQFDGKGNPKQHVAHFVETCENAGTRGDLLVKQFVRTLKGNAFEWYTDLE
        MP GYQPPKFQQFDGKGNPKQHVAHF+ETCE AGTRGDLLVKQFVRTLKGNAFEWY DLE
Subjt:  MPTGYQPPKFQQFDGKGNPKQHVAHFVETCENAGTRGDLLVKQFVRTLKGNAFEWYTDLE
TrEMBL top hitse value%identityAlignment
A0A5A7SI89 Ty3-gypsy retrotransposon protein3.4e-2693.33Show/hide
Query:  MPTGYQPPKFQQFDGKGNPKQHVAHFVETCENAGTRGDLLVKQFVRTLKGNAFEWYTDLE
        MP GYQPPKFQQFDGKGNPKQHVAHF+ETCE AGTRGDLLVKQFVRTLKGNAF+WYTDLE
Subjt:  MPTGYQPPKFQQFDGKGNPKQHVAHFVETCENAGTRGDLLVKQFVRTLKGNAFEWYTDLE
A0A5A7TJ44 Ribonuclease H3.4e-2693.33Show/hide
Query:  MPTGYQPPKFQQFDGKGNPKQHVAHFVETCENAGTRGDLLVKQFVRTLKGNAFEWYTDLE
        MP GYQPPKFQQFDGKGNPKQHVAHF+ETCE AGTRGDLLVKQFVRTLKGNAF+WYTDLE
Subjt:  MPTGYQPPKFQQFDGKGNPKQHVAHFVETCENAGTRGDLLVKQFVRTLKGNAFEWYTDLE
A0A5A7TZU9 Ribonuclease H3.4e-2693.33Show/hide
Query:  MPTGYQPPKFQQFDGKGNPKQHVAHFVETCENAGTRGDLLVKQFVRTLKGNAFEWYTDLE
        MP GYQPPKFQQFDGKGNPKQHVAHF+ETCE AGTRGDLLVKQFVRTLKGNAF+WYTDLE
Subjt:  MPTGYQPPKFQQFDGKGNPKQHVAHFVETCENAGTRGDLLVKQFVRTLKGNAFEWYTDLE
A0A5A7UE14 Retrotransposon protein putative ty3-gypsy sub-class3.4e-2693.33Show/hide
Query:  MPTGYQPPKFQQFDGKGNPKQHVAHFVETCENAGTRGDLLVKQFVRTLKGNAFEWYTDLE
        MP GYQPPKFQQFDGKGNPKQHVAHF+ETCE AGTRGDLLVKQFVRTLKGNAF+WYTDLE
Subjt:  MPTGYQPPKFQQFDGKGNPKQHVAHFVETCENAGTRGDLLVKQFVRTLKGNAFEWYTDLE
A0A5A7UXA1 Retrotransposon gag protein4.5e-2693.33Show/hide
Query:  MPTGYQPPKFQQFDGKGNPKQHVAHFVETCENAGTRGDLLVKQFVRTLKGNAFEWYTDLE
        MP GYQPPKFQQFDGKGNPKQHVAHF+ETCE AGTRGDLLVKQFVRTLKGNAFEWY DLE
Subjt:  MPTGYQPPKFQQFDGKGNPKQHVAHFVETCENAGTRGDLLVKQFVRTLKGNAFEWYTDLE
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCCACAGGGTACCAACCTCCAAAGTTCCAGCAGTTTGACGGGAAGGGCAACCCAAAACAACACGTTGCACACTTCGTTGAGACTTGTGAAAATGCAGGGACACGCGG
TGACCTCCTGGTGAAGCAATTCGTGCGTACCTTGAAAGGAAATGCTTTTGAGTGGTACACCGACTTAGAGCGAACGAATGACACCGGGAACAATTCAAGAGAGAATTCAC
GAATCGCTTCTACAAAGACAAGCGAACCGTGA
mRNA sequenceShow/hide mRNA sequence
ATGCCCACAGGGTACCAACCTCCAAAGTTCCAGCAGTTTGACGGGAAGGGCAACCCAAAACAACACGTTGCACACTTCGTTGAGACTTGTGAAAATGCAGGGACACGCGG
TGACCTCCTGGTGAAGCAATTCGTGCGTACCTTGAAAGGAAATGCTTTTGAGTGGTACACCGACTTAGAGCGAACGAATGACACCGGGAACAATTCAAGAGAGAATTCAC
GAATCGCTTCTACAAAGACAAGCGAACCGTGA
Protein sequenceShow/hide protein sequence
MPTGYQPPKFQQFDGKGNPKQHVAHFVETCENAGTRGDLLVKQFVRTLKGNAFEWYTDLERTNDTGNNSRENSRIASTKTSEP