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Tan0006545 (gene) of Snake gourd v1 genome

Gene IDTan0006545
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRING-H2 finger protein ATL39-like
Genome locationLG01:109157008..109157567
RNA-Seq ExpressionTan0006545
SyntenyTan0006545
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0064334.1 RING-H2 finger protein ATL39-like [Cucumis melo var. makuwa]7.3e-7286.79Show/hide
Query:  MADPLLPLLFPMETMVPESSSPPIVHYSVTLDLRTSIIFSFSIILFFLFLFHVLSGFLQWFLDVRRGGGGSGDVEAATAEERRLRRPEK--LPPAVRFGS
        M DPLL LLFPMETMVPESSSPP++HY+VTLDLRTSIIFSFSIILFFLFLFHVLSGFLQWFLDVRR GGG  DVEAA AEERR++R EK  LPP V+FGS
Subjt:  MADPLLPLLFPMETMVPESSSPPIVHYSVTLDLRTSIIFSFSIILFFLFLFHVLSGFLQWFLDVRRGGGGSGDVEAATAEERRLRRPEK--LPPAVRFGS

Query:  EKMVRRRSEEECAICLEEFIAGENCQALPECNHFFHSDCIDVWFSKKFTCPICRNCVVA
        EKMVRRRSEEECAICLEEF+AGENCQALPEC+HFFHS+CI+VWFSKKFTCPICRNCV A
Subjt:  EKMVRRRSEEECAICLEEFIAGENCQALPECNHFFHSDCIDVWFSKKFTCPICRNCVVA
XP_008453063.1 PREDICTED: RING-H2 finger protein ATL39-like [Cucumis melo]7.3e-7286.79Show/hide
Query:  MADPLLPLLFPMETMVPESSSPPIVHYSVTLDLRTSIIFSFSIILFFLFLFHVLSGFLQWFLDVRRGGGGSGDVEAATAEERRLRRPEK--LPPAVRFGS
        M DPLL LLFPMETMVPESSSPP++HY+VTLDLRTSIIFSFSIILFFLFLFHVLSGFLQWFLDVRR GGG  DVEAA AEERR++R EK  LPP V+FGS
Subjt:  MADPLLPLLFPMETMVPESSSPPIVHYSVTLDLRTSIIFSFSIILFFLFLFHVLSGFLQWFLDVRRGGGGSGDVEAATAEERRLRRPEK--LPPAVRFGS

Query:  EKMVRRRSEEECAICLEEFIAGENCQALPECNHFFHSDCIDVWFSKKFTCPICRNCVVA
        EKMVRRRSEEECAICLEEF+AGENCQALPEC+HFFHS+CI+VWFSKKFTCPICRNCV A
Subjt:  EKMVRRRSEEECAICLEEFIAGENCQALPECNHFFHSDCIDVWFSKKFTCPICRNCVVA
XP_022936829.1 RING-H2 finger protein ATL39-like [Cucurbita moschata]2.3e-6582.28Show/hide
Query:  MADPLLPLLFPMETMVPESSSPP-IVHYSVTLDLRTSIIFSFSIILFFLFLFHVLSGFLQWFLDVRRGGGGSGDVEAATAEERRLRRPEKLPPAVRFGSE
        MADPLL LLFPMETMV ES+SPP +VHY+VTLDLRTS+IFS +IILFFLFL+HVLSGFLQWFL  RRG    GDVEA   EERR+RR EK+P AVRFGSE
Subjt:  MADPLLPLLFPMETMVPESSSPP-IVHYSVTLDLRTSIIFSFSIILFFLFLFHVLSGFLQWFLDVRRGGGGSGDVEAATAEERRLRRPEKLPPAVRFGSE

Query:  KMVRRRSEEECAICLEEFIAGENCQALPECNHFFHSDCIDVWFSKKFTCPICRNCVVA
        +MVRRRSEEECAICLEEF+AGENCQALPECNHFFHSDCIDVWFSKKFTCPICR+C+ A
Subjt:  KMVRRRSEEECAICLEEFIAGENCQALPECNHFFHSDCIDVWFSKKFTCPICRNCVVA
XP_022976597.1 RING-H2 finger protein ATL39-like [Cucurbita maxima]7.8e-6683.54Show/hide
Query:  MADPLLPLLFPMETMVPESSSPP-IVHYSVTLDLRTSIIFSFSIILFFLFLFHVLSGFLQWFLDVRRGGGGSGDVEAATAEERRLRRPEKLPPAVRFGSE
        MADPLL LLFPMETMV ES+SPP IVHY+VTLDLRTSIIFS +IILFFLFL+HVLSGFLQWFL  RRG    GDVEA   EERR+RR EK+P AVRFGSE
Subjt:  MADPLLPLLFPMETMVPESSSPP-IVHYSVTLDLRTSIIFSFSIILFFLFLFHVLSGFLQWFLDVRRGGGGSGDVEAATAEERRLRRPEKLPPAVRFGSE

Query:  KMVRRRSEEECAICLEEFIAGENCQALPECNHFFHSDCIDVWFSKKFTCPICRNCVVA
        +MVRRRSEEECAICLEEF+AGENCQALPECNHFFHSDCIDVWFSKKFTCPICR+C+ A
Subjt:  KMVRRRSEEECAICLEEFIAGENCQALPECNHFFHSDCIDVWFSKKFTCPICRNCVVA
XP_031740449.1 RING-H2 finger protein ATL39-like [Cucumis sativus]4.3e-7287.42Show/hide
Query:  MADPLLPLLFPMETMVPESSSPPIVHYSVTLDLRTSIIFSFSIILFFLFLFHVLSGFLQWFLDVRRGGGGSGDVEAATAEERRLRRPEK--LPPAVRFGS
        M DPLL LLFPMETMVPES SPP++HY+VTLD+RTSIIFSFSIILFFLFLFHVLSGFLQWFLDVRR GGG  DVEAA AEERRL+R EK  LPP VRFGS
Subjt:  MADPLLPLLFPMETMVPESSSPPIVHYSVTLDLRTSIIFSFSIILFFLFLFHVLSGFLQWFLDVRRGGGGSGDVEAATAEERRLRRPEK--LPPAVRFGS

Query:  EKMVRRRSEEECAICLEEFIAGENCQALPECNHFFHSDCIDVWFSKKFTCPICRNCVVA
        EKMVRRRSEEECAICLEEF+ GENCQALPECNHFFHS+CIDVWFSKKFTCPICRNCV A
Subjt:  EKMVRRRSEEECAICLEEFIAGENCQALPECNHFFHSDCIDVWFSKKFTCPICRNCVVA
TrEMBL top hitse value%identityAlignment
A0A0A0L062 RING-type domain-containing protein2.1e-7287.42Show/hide
Query:  MADPLLPLLFPMETMVPESSSPPIVHYSVTLDLRTSIIFSFSIILFFLFLFHVLSGFLQWFLDVRRGGGGSGDVEAATAEERRLRRPEK--LPPAVRFGS
        M DPLL LLFPMETMVPES SPP++HY+VTLD+RTSIIFSFSIILFFLFLFHVLSGFLQWFLDVRR GGG  DVEAA AEERRL+R EK  LPP VRFGS
Subjt:  MADPLLPLLFPMETMVPESSSPPIVHYSVTLDLRTSIIFSFSIILFFLFLFHVLSGFLQWFLDVRRGGGGSGDVEAATAEERRLRRPEK--LPPAVRFGS

Query:  EKMVRRRSEEECAICLEEFIAGENCQALPECNHFFHSDCIDVWFSKKFTCPICRNCVVA
        EKMVRRRSEEECAICLEEF+ GENCQALPECNHFFHS+CIDVWFSKKFTCPICRNCV A
Subjt:  EKMVRRRSEEECAICLEEFIAGENCQALPECNHFFHSDCIDVWFSKKFTCPICRNCVVA
A0A1S3BVC7 RING-H2 finger protein ATL39-like3.5e-7286.79Show/hide
Query:  MADPLLPLLFPMETMVPESSSPPIVHYSVTLDLRTSIIFSFSIILFFLFLFHVLSGFLQWFLDVRRGGGGSGDVEAATAEERRLRRPEK--LPPAVRFGS
        M DPLL LLFPMETMVPESSSPP++HY+VTLDLRTSIIFSFSIILFFLFLFHVLSGFLQWFLDVRR GGG  DVEAA AEERR++R EK  LPP V+FGS
Subjt:  MADPLLPLLFPMETMVPESSSPPIVHYSVTLDLRTSIIFSFSIILFFLFLFHVLSGFLQWFLDVRRGGGGSGDVEAATAEERRLRRPEK--LPPAVRFGS

Query:  EKMVRRRSEEECAICLEEFIAGENCQALPECNHFFHSDCIDVWFSKKFTCPICRNCVVA
        EKMVRRRSEEECAICLEEF+AGENCQALPEC+HFFHS+CI+VWFSKKFTCPICRNCV A
Subjt:  EKMVRRRSEEECAICLEEFIAGENCQALPECNHFFHSDCIDVWFSKKFTCPICRNCVVA
A0A5A7VAT0 RING-H2 finger protein ATL39-like3.5e-7286.79Show/hide
Query:  MADPLLPLLFPMETMVPESSSPPIVHYSVTLDLRTSIIFSFSIILFFLFLFHVLSGFLQWFLDVRRGGGGSGDVEAATAEERRLRRPEK--LPPAVRFGS
        M DPLL LLFPMETMVPESSSPP++HY+VTLDLRTSIIFSFSIILFFLFLFHVLSGFLQWFLDVRR GGG  DVEAA AEERR++R EK  LPP V+FGS
Subjt:  MADPLLPLLFPMETMVPESSSPPIVHYSVTLDLRTSIIFSFSIILFFLFLFHVLSGFLQWFLDVRRGGGGSGDVEAATAEERRLRRPEK--LPPAVRFGS

Query:  EKMVRRRSEEECAICLEEFIAGENCQALPECNHFFHSDCIDVWFSKKFTCPICRNCVVA
        EKMVRRRSEEECAICLEEF+AGENCQALPEC+HFFHS+CI+VWFSKKFTCPICRNCV A
Subjt:  EKMVRRRSEEECAICLEEFIAGENCQALPECNHFFHSDCIDVWFSKKFTCPICRNCVVA
A0A5D3D9M0 RING-H2 finger protein ATL39-like3.5e-7286.79Show/hide
Query:  MADPLLPLLFPMETMVPESSSPPIVHYSVTLDLRTSIIFSFSIILFFLFLFHVLSGFLQWFLDVRRGGGGSGDVEAATAEERRLRRPEK--LPPAVRFGS
        M DPLL LLFPMETMVPESSSPP++HY+VTLDLRTSIIFSFSIILFFLFLFHVLSGFLQWFLDVRR GGG  DVEAA AEERR++R EK  LPP V+FGS
Subjt:  MADPLLPLLFPMETMVPESSSPPIVHYSVTLDLRTSIIFSFSIILFFLFLFHVLSGFLQWFLDVRRGGGGSGDVEAATAEERRLRRPEK--LPPAVRFGS

Query:  EKMVRRRSEEECAICLEEFIAGENCQALPECNHFFHSDCIDVWFSKKFTCPICRNCVVA
        EKMVRRRSEEECAICLEEF+AGENCQALPEC+HFFHS+CI+VWFSKKFTCPICRNCV A
Subjt:  EKMVRRRSEEECAICLEEFIAGENCQALPECNHFFHSDCIDVWFSKKFTCPICRNCVVA
A0A6J1IG67 RING-H2 finger protein ATL39-like3.8e-6683.54Show/hide
Query:  MADPLLPLLFPMETMVPESSSPP-IVHYSVTLDLRTSIIFSFSIILFFLFLFHVLSGFLQWFLDVRRGGGGSGDVEAATAEERRLRRPEKLPPAVRFGSE
        MADPLL LLFPMETMV ES+SPP IVHY+VTLDLRTSIIFS +IILFFLFL+HVLSGFLQWFL  RRG    GDVEA   EERR+RR EK+P AVRFGSE
Subjt:  MADPLLPLLFPMETMVPESSSPP-IVHYSVTLDLRTSIIFSFSIILFFLFLFHVLSGFLQWFLDVRRGGGGSGDVEAATAEERRLRRPEKLPPAVRFGSE

Query:  KMVRRRSEEECAICLEEFIAGENCQALPECNHFFHSDCIDVWFSKKFTCPICRNCVVA
        +MVRRRSEEECAICLEEF+AGENCQALPECNHFFHSDCIDVWFSKKFTCPICR+C+ A
Subjt:  KMVRRRSEEECAICLEEFIAGENCQALPECNHFFHSDCIDVWFSKKFTCPICRNCVVA
SwissProt top hitse value%identityAlignment
P0C034 RING-H2 finger protein ATL101.0e-1256Show/hide
Query:  EEECAICLEEFIAGENCQALPECNHFFHSDCIDVWFSKKFTCPICRNCVV
        +EEC ICL +F++GE  + LP+CNH FH  CID W  +  TCP CRNC+V
Subjt:  EEECAICLEEFIAGENCQALPECNHFFHSDCIDVWFSKKFTCPICRNCVV
P0C035 RING-H2 finger protein ATL605.2e-1255.32Show/hide
Query:  ECAICLEEFIAGENCQALPECNHFFHSDCIDVWFSKKFTCPICRNCV
        ECA+CL + + G+  + LP CNH FH DCID+WF    TCP+CRN V
Subjt:  ECAICLEEFIAGENCQALPECNHFFHSDCIDVWFSKKFTCPICRNCV
Q6NML0 E3 ubiquitin-protein ligase ATL761.1e-1155.1Show/hide
Query:  EECAICLEEFIAGENCQALPECNHFFHSDCIDVWFSKKFTCPICRNCVV
        EEC ICL +F++GE  + LP+CNH FH  CID W     TCP CR+C+V
Subjt:  EECAICLEEFIAGENCQALPECNHFFHSDCIDVWFSKKFTCPICRNCVV
Q9LS99 RING-H2 finger protein ATL771.8e-1257.14Show/hide
Query:  EECAICLEEFIAGENCQALPECNHFFHSDCIDVWFSKKFTCPICRNCVV
        EEC ICL +F+AGE  + LP+CNH FH  CID W ++  TCP CR+C+V
Subjt:  EECAICLEEFIAGENCQALPECNHFFHSDCIDVWFSKKFTCPICRNCVV
Q9XF63 RING-H2 finger protein ATL33.0e-1256.25Show/hide
Query:  ECAICLEEFIAGENCQALPECNHFFHSDCIDVWFSKKFTCPICRNCVV
        EC+ICL E + G+  + LP+CNH FH +CID+WF    TCPICRN V+
Subjt:  ECAICLEEFIAGENCQALPECNHFFHSDCIDVWFSKKFTCPICRNCVV
Arabidopsis top hitse value%identityAlignment
AT1G49210.1 RING/U-box superfamily protein8.2e-1355.1Show/hide
Query:  EECAICLEEFIAGENCQALPECNHFFHSDCIDVWFSKKFTCPICRNCVV
        EEC ICL +F++GE  + LP+CNH FH  CID W     TCP CR+C+V
Subjt:  EECAICLEEFIAGENCQALPECNHFFHSDCIDVWFSKKFTCPICRNCVV
AT1G49220.1 RING/U-box superfamily protein7.4e-1456Show/hide
Query:  EEECAICLEEFIAGENCQALPECNHFFHSDCIDVWFSKKFTCPICRNCVV
        +EEC ICL +F++GE  + LP+CNH FH  CID W  +  TCP CRNC+V
Subjt:  EEECAICLEEFIAGENCQALPECNHFFHSDCIDVWFSKKFTCPICRNCVV
AT1G53820.1 RING/U-box superfamily protein3.7e-1355.32Show/hide
Query:  ECAICLEEFIAGENCQALPECNHFFHSDCIDVWFSKKFTCPICRNCV
        ECA+CL + + G+  + LP CNH FH DCID+WF    TCP+CRN V
Subjt:  ECAICLEEFIAGENCQALPECNHFFHSDCIDVWFSKKFTCPICRNCV
AT1G72310.1 RING/U-box superfamily protein2.1e-1356.25Show/hide
Query:  ECAICLEEFIAGENCQALPECNHFFHSDCIDVWFSKKFTCPICRNCVV
        EC+ICL E + G+  + LP+CNH FH +CID+WF    TCPICRN V+
Subjt:  ECAICLEEFIAGENCQALPECNHFFHSDCIDVWFSKKFTCPICRNCVV
AT3G18773.1 RING/U-box superfamily protein1.3e-1357.14Show/hide
Query:  EECAICLEEFIAGENCQALPECNHFFHSDCIDVWFSKKFTCPICRNCVV
        EEC ICL +F+AGE  + LP+CNH FH  CID W ++  TCP CR+C+V
Subjt:  EECAICLEEFIAGENCQALPECNHFFHSDCIDVWFSKKFTCPICRNCVV

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGATCCATTACTGCCACTCCTCTTCCCCATGGAAACGATGGTCCCGGAGTCGTCTTCTCCCCCAATCGTCCACTATTCCGTAACCCTAGACCTCCGAACCTCCAT
AATCTTCTCCTTCTCCATAATCCTCTTCTTCCTCTTCCTCTTCCACGTCCTCAGCGGCTTCCTCCAGTGGTTCCTCGACGTCCGGCGTGGCGGTGGAGGAAGCGGCGATG
TGGAGGCTGCAACCGCGGAGGAGCGGCGGTTGAGGCGGCCGGAGAAGCTTCCGCCGGCGGTGAGGTTCGGGAGCGAGAAAATGGTGAGGAGGAGGAGCGAGGAGGAATGT
GCGATCTGTTTGGAGGAATTTATCGCCGGAGAAAACTGCCAGGCGTTGCCGGAATGTAACCATTTTTTTCATTCGGATTGTATTGATGTTTGGTTTAGCAAGAAATTTAC
TTGCCCTATCTGTCGTAATTGTGTTGTTGCAGCTTAG
mRNA sequenceShow/hide mRNA sequence
CACAAACAAACAAACAAACAAAAATCCCATAGCCAAAGAAAGAACTCAAAAACCTCTCAACAATGGCGGATCCATTACTGCCACTCCTCTTCCCCATGGAAACGATGGTC
CCGGAGTCGTCTTCTCCCCCAATCGTCCACTATTCCGTAACCCTAGACCTCCGAACCTCCATAATCTTCTCCTTCTCCATAATCCTCTTCTTCCTCTTCCTCTTCCACGT
CCTCAGCGGCTTCCTCCAGTGGTTCCTCGACGTCCGGCGTGGCGGTGGAGGAAGCGGCGATGTGGAGGCTGCAACCGCGGAGGAGCGGCGGTTGAGGCGGCCGGAGAAGC
TTCCGCCGGCGGTGAGGTTCGGGAGCGAGAAAATGGTGAGGAGGAGGAGCGAGGAGGAATGTGCGATCTGTTTGGAGGAATTTATCGCCGGAGAAAACTGCCAGGCGTTG
CCGGAATGTAACCATTTTTTTCATTCGGATTGTATTGATGTTTGGTTTAGCAAGAAATTTACTTGCCCTATCTGTCGTAATTGTGTTGTTGCAGCTTAGATCAACTTCTT
CTTCTTCTTC
Protein sequenceShow/hide protein sequence
MADPLLPLLFPMETMVPESSSPPIVHYSVTLDLRTSIIFSFSIILFFLFLFHVLSGFLQWFLDVRRGGGGSGDVEAATAEERRLRRPEKLPPAVRFGSEKMVRRRSEEEC
AICLEEFIAGENCQALPECNHFFHSDCIDVWFSKKFTCPICRNCVVAA