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Tan0006546 (gene) of Snake gourd v1 genome

Gene IDTan0006546
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRetrotran_gag_3 domain-containing protein
Genome locationLG02:6967086..6967589
RNA-Seq ExpressionTan0006546
SyntenyTan0006546
Gene Ontology termsGO:0044237 - cellular metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0067279.1 uncharacterized protein E6C27_scaffold418G001000 [Cucumis melo var. makuwa]2.9e-3452.6Show/hide
Query:  TETSNFSARSLNQLLNKVTTIKLDRGNFLSWKNLTLPILRSYKLEGFLLGTKLCPPMFVSHLESQQNARIMASAEGASSFGVSSSGVEGILNPEYEYWMT
        T T++F+   LNQ+LN++TTIKLDRGN+L WK L LPIL+SYKL   L G   C P  +  L +Q N  I+ +A   S    SSS     +NP+YE W+T
Subjt:  TETSNFSARSLNQLLNKVTTIKLDRGNFLSWKNLTLPILRSYKLEGFLLGTKLCPPMFVSHLESQQNARIMASAEGASSFGVSSSGVEGILNPEYEYWMT

Query:  IDQLVLSWLYNSMTPEVATQVMAYGSSKDLWGAIQTLFGLQSRVEEDYLRQVFQ
         D L+L WLYNSMTPEV  Q+M + ++KDLW A Q LFG+QSR +ED+L Q FQ
Subjt:  IDQLVLSWLYNSMTPEVATQVMAYGSSKDLWGAIQTLFGLQSRVEEDYLRQVFQ

XP_016900937.1 PREDICTED: uncharacterized protein LOC107991116 [Cucumis melo]2.9e-3452.6Show/hide
Query:  TETSNFSARSLNQLLNKVTTIKLDRGNFLSWKNLTLPILRSYKLEGFLLGTKLCPPMFVSHLESQQNARIMASAEGASSFGVSSSGVEGILNPEYEYWMT
        T T++F+   LNQ+LN++TTIKLDRGN+L WK L LPIL+SYKL   L G   C P  +  L +Q N  I+ +A   S    SSS     +NP+YE W+T
Subjt:  TETSNFSARSLNQLLNKVTTIKLDRGNFLSWKNLTLPILRSYKLEGFLLGTKLCPPMFVSHLESQQNARIMASAEGASSFGVSSSGVEGILNPEYEYWMT

Query:  IDQLVLSWLYNSMTPEVATQVMAYGSSKDLWGAIQTLFGLQSRVEEDYLRQVFQ
         D L+L WLYNSMTPEV  Q+M + ++KDLW A Q LFG+QSR +ED+L Q FQ
Subjt:  IDQLVLSWLYNSMTPEVATQVMAYGSSKDLWGAIQTLFGLQSRVEEDYLRQVFQ

XP_016902203.1 PREDICTED: uncharacterized protein LOC107991581 isoform X3 [Cucumis melo]1.4e-3350Show/hide
Query:  MANTQSYESPSLLTETSNFSARSLNQLLNKVTTIKLDRGNFLSWKNLTLPILRSYKLEGFLLGTKLCPPMFVSHLESQQNARIMASAEGA-SSFGVSSSG
        MAN Q   +P  L+ ++ FS   LNQ+LN++TT+KLDR N+L WK L LPIL+ YKLEG L     CP  FV    S  ++    + EGA ++ G SSS 
Subjt:  MANTQSYESPSLLTETSNFSARSLNQLLNKVTTIKLDRGNFLSWKNLTLPILRSYKLEGFLLGTKLCPPMFVSHLESQQNARIMASAEGA-SSFGVSSSG

Query:  VEGILNPEYEYWMTIDQLVLSWLYNSMTPEVATQVMAYGSSKDLWGAIQTLFGLQSRVEEDYLRQVFQ
           I+NP +E W+T D L+L WLYNSMTP+VA Q+M + + +DLW A Q  FG+QSR EED+LRQ+ Q
Subjt:  VEGILNPEYEYWMTIDQLVLSWLYNSMTPEVATQVMAYGSSKDLWGAIQTLFGLQSRVEEDYLRQVFQ

XP_022151683.1 uncharacterized protein LOC111019598 [Momordica charantia]6.4e-3449.06Show/hide
Query:  SPSLLTETSNFSARSLNQLLNKVTTIKLDRGNFLSWKNLTLPILRSYKLEGFLLGTKLCPPMFVSHLESQQNARIMASAEGASSFGVSSSGVEGILNPEY
        +P  +   + F++  LNQLLN++T+IK+DRGNFL W+NL LPILRSYKL  +L G K CPP  +   ++  N             G +SS     LNP Y
Subjt:  SPSLLTETSNFSARSLNQLLNKVTTIKLDRGNFLSWKNLTLPILRSYKLEGFLLGTKLCPPMFVSHLESQQNARIMASAEGASSFGVSSSGVEGILNPEY

Query:  EYWMTIDQLVLSWLYNSMTPEVATQVMAYGSSKDLWGAIQTLFGLQSRVEEDYLRQVFQ
        E W+ +D+L+L WLYNSM  +VA QVM + +S++LW A+Q LFG+QSR E DYL+QVFQ
Subjt:  EYWMTIDQLVLSWLYNSMTPEVATQVMAYGSSKDLWGAIQTLFGLQSRVEEDYLRQVFQ

XP_038887015.1 uncharacterized protein LOC120077182 [Benincasa hispida]4.7e-3755.7Show/hide
Query:  SLLTETSNFSARSLNQLLNKVTTIKLDRGNFLSWKNLTLPILRSYKLEGFLLGTKLCPPMF-VSHLESQQNARIMASAEGASSFGVSSSGVEGILNPEYE
        S + E++ FS   LNQLLN++T  KL+RG F+ WK L LPILR YKLE  L GTK+C PMF VS + S +     + A G    G SS+  E   NP YE
Subjt:  SLLTETSNFSARSLNQLLNKVTTIKLDRGNFLSWKNLTLPILRSYKLEGFLLGTKLCPPMF-VSHLESQQNARIMASAEGASSFGVSSSGVEGILNPEYE

Query:  YWMTIDQLVLSWLYNSMTPEVATQVMAYGSSKDLWGAIQTLFGLQSRVEEDYLRQVFQ
         W+T DQL+L W YNSMTPEVA Q+M + S+K LW AI +LFG+QSR E+DYLRQVFQ
Subjt:  YWMTIDQLVLSWLYNSMTPEVATQVMAYGSSKDLWGAIQTLFGLQSRVEEDYLRQVFQ

TrEMBL top hitse value%identityAlignment
A0A1S4DY80 uncharacterized protein LOC1079911161.4e-3452.6Show/hide
Query:  TETSNFSARSLNQLLNKVTTIKLDRGNFLSWKNLTLPILRSYKLEGFLLGTKLCPPMFVSHLESQQNARIMASAEGASSFGVSSSGVEGILNPEYEYWMT
        T T++F+   LNQ+LN++TTIKLDRGN+L WK L LPIL+SYKL   L G   C P  +  L +Q N  I+ +A   S    SSS     +NP+YE W+T
Subjt:  TETSNFSARSLNQLLNKVTTIKLDRGNFLSWKNLTLPILRSYKLEGFLLGTKLCPPMFVSHLESQQNARIMASAEGASSFGVSSSGVEGILNPEYEYWMT

Query:  IDQLVLSWLYNSMTPEVATQVMAYGSSKDLWGAIQTLFGLQSRVEEDYLRQVFQ
         D L+L WLYNSMTPEV  Q+M + ++KDLW A Q LFG+QSR +ED+L Q FQ
Subjt:  IDQLVLSWLYNSMTPEVATQVMAYGSSKDLWGAIQTLFGLQSRVEEDYLRQVFQ

A0A1S4E1U6 uncharacterized protein LOC107991581 isoform X16.9e-3450Show/hide
Query:  MANTQSYESPSLLTETSNFSARSLNQLLNKVTTIKLDRGNFLSWKNLTLPILRSYKLEGFLLGTKLCPPMFVSHLESQQNARIMASAEGA-SSFGVSSSG
        MAN Q   +P  L+ ++ FS   LNQ+LN++TT+KLDR N+L WK L LPIL+ YKLEG L     CP  FV    S  ++    + EGA ++ G SSS 
Subjt:  MANTQSYESPSLLTETSNFSARSLNQLLNKVTTIKLDRGNFLSWKNLTLPILRSYKLEGFLLGTKLCPPMFVSHLESQQNARIMASAEGA-SSFGVSSSG

Query:  VEGILNPEYEYWMTIDQLVLSWLYNSMTPEVATQVMAYGSSKDLWGAIQTLFGLQSRVEEDYLRQVFQ
           I+NP +E W+T D L+L WLYNSMTP+VA Q+M + + +DLW A Q  FG+QSR EED+LRQ+ Q
Subjt:  VEGILNPEYEYWMTIDQLVLSWLYNSMTPEVATQVMAYGSSKDLWGAIQTLFGLQSRVEEDYLRQVFQ

A0A1S4E1U9 uncharacterized protein LOC107991581 isoform X46.9e-3450Show/hide
Query:  MANTQSYESPSLLTETSNFSARSLNQLLNKVTTIKLDRGNFLSWKNLTLPILRSYKLEGFLLGTKLCPPMFVSHLESQQNARIMASAEGA-SSFGVSSSG
        MAN Q   +P  L+ ++ FS   LNQ+LN++TT+KLDR N+L WK L LPIL+ YKLEG L     CP  FV    S  ++    + EGA ++ G SSS 
Subjt:  MANTQSYESPSLLTETSNFSARSLNQLLNKVTTIKLDRGNFLSWKNLTLPILRSYKLEGFLLGTKLCPPMFVSHLESQQNARIMASAEGA-SSFGVSSSG

Query:  VEGILNPEYEYWMTIDQLVLSWLYNSMTPEVATQVMAYGSSKDLWGAIQTLFGLQSRVEEDYLRQVFQ
           I+NP +E W+T D L+L WLYNSMTP+VA Q+M + + +DLW A Q  FG+QSR EED+LRQ+ Q
Subjt:  VEGILNPEYEYWMTIDQLVLSWLYNSMTPEVATQVMAYGSSKDLWGAIQTLFGLQSRVEEDYLRQVFQ

A0A5A7VPY0 Uncharacterized protein1.4e-3452.6Show/hide
Query:  TETSNFSARSLNQLLNKVTTIKLDRGNFLSWKNLTLPILRSYKLEGFLLGTKLCPPMFVSHLESQQNARIMASAEGASSFGVSSSGVEGILNPEYEYWMT
        T T++F+   LNQ+LN++TTIKLDRGN+L WK L LPIL+SYKL   L G   C P  +  L +Q N  I+ +A   S    SSS     +NP+YE W+T
Subjt:  TETSNFSARSLNQLLNKVTTIKLDRGNFLSWKNLTLPILRSYKLEGFLLGTKLCPPMFVSHLESQQNARIMASAEGASSFGVSSSGVEGILNPEYEYWMT

Query:  IDQLVLSWLYNSMTPEVATQVMAYGSSKDLWGAIQTLFGLQSRVEEDYLRQVFQ
         D L+L WLYNSMTPEV  Q+M + ++KDLW A Q LFG+QSR +ED+L Q FQ
Subjt:  IDQLVLSWLYNSMTPEVATQVMAYGSSKDLWGAIQTLFGLQSRVEEDYLRQVFQ

A0A6J1DCW4 uncharacterized protein LOC1110195983.1e-3449.06Show/hide
Query:  SPSLLTETSNFSARSLNQLLNKVTTIKLDRGNFLSWKNLTLPILRSYKLEGFLLGTKLCPPMFVSHLESQQNARIMASAEGASSFGVSSSGVEGILNPEY
        +P  +   + F++  LNQLLN++T+IK+DRGNFL W+NL LPILRSYKL  +L G K CPP  +   ++  N             G +SS     LNP Y
Subjt:  SPSLLTETSNFSARSLNQLLNKVTTIKLDRGNFLSWKNLTLPILRSYKLEGFLLGTKLCPPMFVSHLESQQNARIMASAEGASSFGVSSSGVEGILNPEY

Query:  EYWMTIDQLVLSWLYNSMTPEVATQVMAYGSSKDLWGAIQTLFGLQSRVEEDYLRQVFQ
        E W+ +D+L+L WLYNSM  +VA QVM + +S++LW A+Q LFG+QSR E DYL+QVFQ
Subjt:  EYWMTIDQLVLSWLYNSMTPEVATQVMAYGSSKDLWGAIQTLFGLQSRVEEDYLRQVFQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTAACACCCAATCTTACGAAAGTCCTTCCTTGTTGACCGAAACATCGAACTTCAGTGCACGCTCTCTAAACCAGCTGCTAAATAAGGTTACAACAATTAAGCTTGA
TCGTGGAAATTTCCTGTCATGGAAAAACCTAACCCTACCCATTCTTCGCAGCTACAAGTTGGAAGGCTTCCTACTTGGGACAAAATTGTGTCCACCAATGTTCGTTTCCC
ACCTTGAAAGTCAACAAAATGCTAGAATTATGGCTTCCGCTGAAGGAGCATCAAGTTTTGGAGTATCAAGTTCAGGAGTAGAGGGCATTCTGAATCCGGAGTATGAATAT
TGGATGACTATCGATCAGCTTGTTTTGAGTTGGTTGTACAATTCTATGACACCAGAAGTAGCCACTCAAGTGATGGCCTATGGGAGCTCAAAAGATCTGTGGGGAGCTAT
ACAAACACTATTTGGATTGCAATCAAGGGTTGAAGAAGATTACTTAAGACAAGTGTTTCAATAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTAACACCCAATCTTACGAAAGTCCTTCCTTGTTGACCGAAACATCGAACTTCAGTGCACGCTCTCTAAACCAGCTGCTAAATAAGGTTACAACAATTAAGCTTGA
TCGTGGAAATTTCCTGTCATGGAAAAACCTAACCCTACCCATTCTTCGCAGCTACAAGTTGGAAGGCTTCCTACTTGGGACAAAATTGTGTCCACCAATGTTCGTTTCCC
ACCTTGAAAGTCAACAAAATGCTAGAATTATGGCTTCCGCTGAAGGAGCATCAAGTTTTGGAGTATCAAGTTCAGGAGTAGAGGGCATTCTGAATCCGGAGTATGAATAT
TGGATGACTATCGATCAGCTTGTTTTGAGTTGGTTGTACAATTCTATGACACCAGAAGTAGCCACTCAAGTGATGGCCTATGGGAGCTCAAAAGATCTGTGGGGAGCTAT
ACAAACACTATTTGGATTGCAATCAAGGGTTGAAGAAGATTACTTAAGACAAGTGTTTCAATAG
Protein sequenceShow/hide protein sequence
MANTQSYESPSLLTETSNFSARSLNQLLNKVTTIKLDRGNFLSWKNLTLPILRSYKLEGFLLGTKLCPPMFVSHLESQQNARIMASAEGASSFGVSSSGVEGILNPEYEY
WMTIDQLVLSWLYNSMTPEVATQVMAYGSSKDLWGAIQTLFGLQSRVEEDYLRQVFQ