CuGenDBv2

Gene ID	Tan0006580
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Ty3-gypsy retrotransposon protein
Genome location	LG08:17289100..17289348
RNA-Seq Expression	Tan0006580
Synteny	Tan0006580
Gene Ontology terms	GO:0006310 - DNA recombination (biological process) GO:0015074 - DNA integration (biological process) GO:0071897 - DNA biosynthetic process (biological process) GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process) GO:0003723 - RNA binding (molecular function) GO:0003887 - DNA-directed DNA polymerase activity (molecular function) GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domains	IPR005162 - Retrotransposon gag domain

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0025354.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]

9.4e-39

92.68

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Query:  MPTGYQPPKFQQFDGKGNPKQHVAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLEPETIDSWEQFEREFLNRFYSTR
        MP GYQPPKFQQFDGKGNPKQHVAHF+ETCE AGTRGDLLVKQFVRTLKGNAFDWYTDLEPE+IDSWEQ ER+FLNRFYSTR
Subjt:  MPTGYQPPKFQQFDGKGNPKQHVAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLEPETIDSWEQFEREFLNRFYSTR

KAA0043322.1 uncharacterized protein E6C27_scaffold110G002330 [Cucumis melo var. makuwa]

4.7e-38

91.46

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Query:  MPTGYQPPKFQQFDGKGNPKQHVAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLEPETIDSWEQFEREFLNRFYSTR
        MP GYQPPKFQQFDGKGNPKQHVAHF+ETCE AGTRGDLLVKQFVRTLKGNAFDWYTDLEPE+IDSWEQ ER+FLNRFYS R
Subjt:  MPTGYQPPKFQQFDGKGNPKQHVAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLEPETIDSWEQFEREFLNRFYSTR

KAA0047477.1 uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa]

9.4e-39

92.68

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Query:  MPTGYQPPKFQQFDGKGNPKQHVAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLEPETIDSWEQFEREFLNRFYSTR
        MP GYQPPKFQQFDGKGNPKQHVAHF+ETCE AGTRGDLLVKQFVRTLKGNAFDWYTDLEPE+IDSWEQ ER+FLNRFYSTR
Subjt:  MPTGYQPPKFQQFDGKGNPKQHVAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLEPETIDSWEQFEREFLNRFYSTR

KAA0053464.1 retrotransposon protein putative ty3-gypsy sub-class [Cucumis melo var. makuwa]

9.4e-39

92.68

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Query:  MPTGYQPPKFQQFDGKGNPKQHVAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLEPETIDSWEQFEREFLNRFYSTR
        MP GYQPPKFQQFDGKGNPKQHVAHF+ETCE AGTRGDLLVKQFVRTLKGNAFDWYTDLEPE+IDSWEQ ER+FLNRFYSTR
Subjt:  MPTGYQPPKFQQFDGKGNPKQHVAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLEPETIDSWEQFEREFLNRFYSTR

XP_022159413.1 uncharacterized protein LOC111025834 [Momordica charantia]

4.7e-38

90.24

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Query:  MPTGYQPPKFQQFDGKGNPKQHVAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLEPETIDSWEQFEREFLNRFYSTR
        MP GYQPPKFQ FDGKGNPKQH+AHFVETCENAGTRGD LVKQFVRTLKGNAFDWYTDLEPETI+SWEQ E+EFLNRFYST+
Subjt:  MPTGYQPPKFQQFDGKGNPKQHVAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLEPETIDSWEQFEREFLNRFYSTR

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SI89 Ty3-gypsy retrotransposon protein

4.5e-39

92.68

Show/hide

Query:  MPTGYQPPKFQQFDGKGNPKQHVAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLEPETIDSWEQFEREFLNRFYSTR
        MP GYQPPKFQQFDGKGNPKQHVAHF+ETCE AGTRGDLLVKQFVRTLKGNAFDWYTDLEPE+IDSWEQ ER+FLNRFYSTR
Subjt:  MPTGYQPPKFQQFDGKGNPKQHVAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLEPETIDSWEQFEREFLNRFYSTR

A0A5A7TJ44 Ribonuclease H

2.3e-38

91.46

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Query:  MPTGYQPPKFQQFDGKGNPKQHVAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLEPETIDSWEQFEREFLNRFYSTR
        MP GYQPPKFQQFDGKGNPKQHVAHF+ETCE AGTRGDLLVKQFVRTLKGNAFDWYTDLEPE+IDSWEQ ER+FLNRFYS R
Subjt:  MPTGYQPPKFQQFDGKGNPKQHVAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLEPETIDSWEQFEREFLNRFYSTR

A0A5A7TZU9 Ribonuclease H

4.5e-39

92.68

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Query:  MPTGYQPPKFQQFDGKGNPKQHVAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLEPETIDSWEQFEREFLNRFYSTR
        MP GYQPPKFQQFDGKGNPKQHVAHF+ETCE AGTRGDLLVKQFVRTLKGNAFDWYTDLEPE+IDSWEQ ER+FLNRFYSTR
Subjt:  MPTGYQPPKFQQFDGKGNPKQHVAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLEPETIDSWEQFEREFLNRFYSTR

A0A5A7UE14 Retrotransposon protein putative ty3-gypsy sub-class

4.5e-39

92.68

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Query:  MPTGYQPPKFQQFDGKGNPKQHVAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLEPETIDSWEQFEREFLNRFYSTR
        MP GYQPPKFQQFDGKGNPKQHVAHF+ETCE AGTRGDLLVKQFVRTLKGNAFDWYTDLEPE+IDSWEQ ER+FLNRFYSTR
Subjt:  MPTGYQPPKFQQFDGKGNPKQHVAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLEPETIDSWEQFEREFLNRFYSTR

A0A6J1DYQ8 uncharacterized protein LOC111025834

2.3e-38

90.24

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Query:  MPTGYQPPKFQQFDGKGNPKQHVAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLEPETIDSWEQFEREFLNRFYSTR
        MP GYQPPKFQ FDGKGNPKQH+AHFVETCENAGTRGD LVKQFVRTLKGNAFDWYTDLEPETI+SWEQ E+EFLNRFYST+
Subjt:  MPTGYQPPKFQQFDGKGNPKQHVAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLEPETIDSWEQFEREFLNRFYSTR

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGCCCACAGGGTACCAACCTCCAAAATTCCAGCAGTTTGACGGGAAGGGCAACCCAAAGCAACACGTTGCACATTTCGTCGAAACCTGCGAAAATGCAGGGACGCGTGG
TGACCTCCTGGTCAAGCAATTCGTGCGTACCTTGAAAGGAAATGCCTTTGATTGGTACACTGATTTAGAACCAGAAACGATTGACAGCTGGGAACAATTCGAGAGAGAAT
TCCTAAATCGCTTCTACAGTACGAGGTGA

mRNA sequence

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Protein sequence

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MPTGYQPPKFQQFDGKGNPKQHVAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLEPETIDSWEQFEREFLNRFYSTR

Tan0006580 (gene) of Snake gourd v1 genome