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Tan0006616 (gene) of Snake gourd v1 genome

Gene IDTan0006616
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionGag/pol protein
Genome locationLG04:53653675..53654001
RNA-Seq ExpressionTan0006616
SyntenyTan0006616
Gene Ontology termsGO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008234 - cysteine-type peptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044955.1 gag/pol protein [Cucumis melo var. makuwa]7.5e-3677.88Show/hide
Query:  MITAKEIMGSLQAMFGQPSSSVCYDALKYVYNSRMKEGTSVREHVLNMMVHFNVAEVNGAVIDENSQVSFIMESLPKSFLQFRTNSVMNKIEYNLTTLLN
        M+TA+EIM SLQ MFGQ S  + +DALKY+YN+RM EG SVREHVLNMMVHFNVAE+NGAVIDE SQVSFI+ESLP+SFLQFR+N+VMNKI Y LTTLLN
Subjt:  MITAKEIMGSLQAMFGQPSSSVCYDALKYVYNSRMKEGTSVREHVLNMMVHFNVAEVNGAVIDENSQVSFIMESLPKSFLQFRTNSVMNKIEYNLTTLLN

Query:  ELRT
        EL+T
Subjt:  ELRT
KAA0048404.1 gag/pol protein [Cucumis melo var. makuwa]7.5e-3677.88Show/hide
Query:  MITAKEIMGSLQAMFGQPSSSVCYDALKYVYNSRMKEGTSVREHVLNMMVHFNVAEVNGAVIDENSQVSFIMESLPKSFLQFRTNSVMNKIEYNLTTLLN
        M+TA+EIM SLQ MFGQ S  + +DALKY+YN+RM EG SVREHVLNMMVHFNVAE+NGAVIDE SQVSFI+ESLP+SFLQFR+N+VMNKI Y LTTLLN
Subjt:  MITAKEIMGSLQAMFGQPSSSVCYDALKYVYNSRMKEGTSVREHVLNMMVHFNVAEVNGAVIDENSQVSFIMESLPKSFLQFRTNSVMNKIEYNLTTLLN

Query:  ELRT
        EL+T
Subjt:  ELRT
KAA0051952.1 gag/pol protein [Cucumis melo var. makuwa]7.5e-3677.88Show/hide
Query:  MITAKEIMGSLQAMFGQPSSSVCYDALKYVYNSRMKEGTSVREHVLNMMVHFNVAEVNGAVIDENSQVSFIMESLPKSFLQFRTNSVMNKIEYNLTTLLN
        M+TA+EIM SLQ MFGQ S  + +DALKY+YN+RM EG SVREHVLNMMVHFNVAE+NGAVIDE SQVSFI+ESLP+SFLQFR+N+VMNKI Y LTTLLN
Subjt:  MITAKEIMGSLQAMFGQPSSSVCYDALKYVYNSRMKEGTSVREHVLNMMVHFNVAEVNGAVIDENSQVSFIMESLPKSFLQFRTNSVMNKIEYNLTTLLN

Query:  ELRT
        EL+T
Subjt:  ELRT
KAA0054490.1 gag/pol protein [Cucumis melo var. makuwa]7.5e-3677.88Show/hide
Query:  MITAKEIMGSLQAMFGQPSSSVCYDALKYVYNSRMKEGTSVREHVLNMMVHFNVAEVNGAVIDENSQVSFIMESLPKSFLQFRTNSVMNKIEYNLTTLLN
        M+TA+EIM SLQ MFGQ S  + +DALKY+YN+RM EG SVREHVLNMMVHFNVAE+NGAVIDE SQVSFI+ESLP+SFLQFR+N+VMNKI Y LTTLLN
Subjt:  MITAKEIMGSLQAMFGQPSSSVCYDALKYVYNSRMKEGTSVREHVLNMMVHFNVAEVNGAVIDENSQVSFIMESLPKSFLQFRTNSVMNKIEYNLTTLLN

Query:  ELRT
        EL+T
Subjt:  ELRT
TYK14550.1 gag/pol protein [Cucumis melo var. makuwa]7.5e-3677.88Show/hide
Query:  MITAKEIMGSLQAMFGQPSSSVCYDALKYVYNSRMKEGTSVREHVLNMMVHFNVAEVNGAVIDENSQVSFIMESLPKSFLQFRTNSVMNKIEYNLTTLLN
        M+TA+EIM SLQ MFGQ S  + +DALKY+YN+RM EG SVREHVLNMMVHFNVAE+NGAVIDE SQVSFI+ESLP+SFLQFR+N+VMNKI Y LTTLLN
Subjt:  MITAKEIMGSLQAMFGQPSSSVCYDALKYVYNSRMKEGTSVREHVLNMMVHFNVAEVNGAVIDENSQVSFIMESLPKSFLQFRTNSVMNKIEYNLTTLLN

Query:  ELRT
        EL+T
Subjt:  ELRT
TrEMBL top hitse value%identityAlignment
A0A5A7SMH8 Gag/pol protein3.6e-3677.88Show/hide
Query:  MITAKEIMGSLQAMFGQPSSSVCYDALKYVYNSRMKEGTSVREHVLNMMVHFNVAEVNGAVIDENSQVSFIMESLPKSFLQFRTNSVMNKIEYNLTTLLN
        M+TA+EIM SLQ MFGQ S  + +DALKY+YN+RM EG SVREHVLNMMVHFNVAE+NGAVIDE SQVSFI+ESLP+SFLQFR+N+VMNKI Y LTTLLN
Subjt:  MITAKEIMGSLQAMFGQPSSSVCYDALKYVYNSRMKEGTSVREHVLNMMVHFNVAEVNGAVIDENSQVSFIMESLPKSFLQFRTNSVMNKIEYNLTTLLN

Query:  ELRT
        EL+T
Subjt:  ELRT
A0A5A7TU93 Gag/pol protein3.6e-3677.88Show/hide
Query:  MITAKEIMGSLQAMFGQPSSSVCYDALKYVYNSRMKEGTSVREHVLNMMVHFNVAEVNGAVIDENSQVSFIMESLPKSFLQFRTNSVMNKIEYNLTTLLN
        M+TA+EIM SLQ MFGQ S  + +DALKY+YN+RM EG SVREHVLNMMVHFNVAE+NGAVIDE SQVSFI+ESLP+SFLQFR+N+VMNKI Y LTTLLN
Subjt:  MITAKEIMGSLQAMFGQPSSSVCYDALKYVYNSRMKEGTSVREHVLNMMVHFNVAEVNGAVIDENSQVSFIMESLPKSFLQFRTNSVMNKIEYNLTTLLN

Query:  ELRT
        EL+T
Subjt:  ELRT
A0A5A7TWB9 Gag/pol protein3.6e-3677.88Show/hide
Query:  MITAKEIMGSLQAMFGQPSSSVCYDALKYVYNSRMKEGTSVREHVLNMMVHFNVAEVNGAVIDENSQVSFIMESLPKSFLQFRTNSVMNKIEYNLTTLLN
        M+TA+EIM SLQ MFGQ S  + +DALKY+YN+RM EG SVREHVLNMMVHFNVAE+NGAVIDE SQVSFI+ESLP+SFLQFR+N+VMNKI Y LTTLLN
Subjt:  MITAKEIMGSLQAMFGQPSSSVCYDALKYVYNSRMKEGTSVREHVLNMMVHFNVAEVNGAVIDENSQVSFIMESLPKSFLQFRTNSVMNKIEYNLTTLLN

Query:  ELRT
        EL+T
Subjt:  ELRT
A0A5A7V4M1 Gag/pol protein3.6e-3677.88Show/hide
Query:  MITAKEIMGSLQAMFGQPSSSVCYDALKYVYNSRMKEGTSVREHVLNMMVHFNVAEVNGAVIDENSQVSFIMESLPKSFLQFRTNSVMNKIEYNLTTLLN
        M+TA+EIM SLQ MFGQ S  + +DALKY+YN+RM EG SVREHVLNMMVHFNVAE+NGAVIDE SQVSFI+ESLP+SFLQFR+N+VMNKI Y LTTLLN
Subjt:  MITAKEIMGSLQAMFGQPSSSVCYDALKYVYNSRMKEGTSVREHVLNMMVHFNVAEVNGAVIDENSQVSFIMESLPKSFLQFRTNSVMNKIEYNLTTLLN

Query:  ELRT
        EL+T
Subjt:  ELRT
A0A5D3CPJ6 Gag/pol protein3.6e-3677.88Show/hide
Query:  MITAKEIMGSLQAMFGQPSSSVCYDALKYVYNSRMKEGTSVREHVLNMMVHFNVAEVNGAVIDENSQVSFIMESLPKSFLQFRTNSVMNKIEYNLTTLLN
        M+TA+EIM SLQ MFGQ S  + +DALKY+YN+RM EG SVREHVLNMMVHFNVAE+NGAVIDE SQVSFI+ESLP+SFLQFR+N+VMNKI Y LTTLLN
Subjt:  MITAKEIMGSLQAMFGQPSSSVCYDALKYVYNSRMKEGTSVREHVLNMMVHFNVAEVNGAVIDENSQVSFIMESLPKSFLQFRTNSVMNKIEYNLTTLLN

Query:  ELRT
        EL+T
Subjt:  ELRT
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATCACCGCAAAAGAGATCATGGGATCATTACAGGCCATGTTTGGACAACCGTCCTCATCGGTCTGTTATGATGCTCTCAAGTACGTTTACAACTCCCGAATGAAGGA
GGGAACATCTGTTAGGGAGCATGTCCTTAATATGATGGTCCACTTCAACGTGGCAGAGGTAAACGGGGCTGTCATTGATGAGAACAGTCAGGTTAGCTTTATAATGGAAT
CTCTTCCGAAGAGTTTCCTACAGTTCCGCACCAACTCGGTGATGAACAAGATAGAGTATAACCTGACTACTCTACTTAACGAGCTCCGGACATTGAGTCCCCGATGA
mRNA sequenceShow/hide mRNA sequence
ATGATCACCGCAAAAGAGATCATGGGATCATTACAGGCCATGTTTGGACAACCGTCCTCATCGGTCTGTTATGATGCTCTCAAGTACGTTTACAACTCCCGAATGAAGGA
GGGAACATCTGTTAGGGAGCATGTCCTTAATATGATGGTCCACTTCAACGTGGCAGAGGTAAACGGGGCTGTCATTGATGAGAACAGTCAGGTTAGCTTTATAATGGAAT
CTCTTCCGAAGAGTTTCCTACAGTTCCGCACCAACTCGGTGATGAACAAGATAGAGTATAACCTGACTACTCTACTTAACGAGCTCCGGACATTGAGTCCCCGATGA
Protein sequenceShow/hide protein sequence
MITAKEIMGSLQAMFGQPSSSVCYDALKYVYNSRMKEGTSVREHVLNMMVHFNVAEVNGAVIDENSQVSFIMESLPKSFLQFRTNSVMNKIEYNLTTLLNELRTLSPR