; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0006648 (gene) of Snake gourd v1 genome

Gene IDTan0006648
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRibonuclease H-like superfamily protein
Genome locationLG06:26102557..26109369
RNA-Seq ExpressionTan0006648
SyntenyTan0006648
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_015381856.1 uncharacterized protein LOC107175052 [Citrus sinensis]2.8e-0723.64Show/hide
Query:  LESLDRSLLTKAAISKINNYRENRGIIEGKTKTDI--------EEERIVNQSVLNALGQGGLNGSGSNTQIWASVIHGPKTQTAAEGYMREIFQREKFLR
        +E+L  +LL      K+     +   ++GK  +D+        ++++ +N  ++ +L     N    N  ++  V   P    A    + +  +R K   
Subjt:  LESLDRSLLTKAAISKINNYRENRGIIEGKTKTDI--------EEERIVNQSVLNALGQGGLNGSGSNTQIWASVIHGPKTQTAAEGYMREIFQREKFLR

Query:  GQCVNRPSTEAVRDWTPPPQGWVKLNVCVAWYEHEAKNGLGWILRDYNDPILGAGYKFFYHA------------WTILI-----TSPLVDESDSVNTISL
         +      T   + W PP +GW+K+NV  A  E     GLG ++R++   I+ A  K   ++            W + +      + ++ E DS   I L
Subjt:  GQCVNRPSTEAVRDWTPPPQGWVKLNVCVAWYEHEAKNGLGWILRDYNDPILGAGYKFFYHA------------WTILI-----TSPLVDESDSVNTISL

Query:  INNDRVDLQKATDYAHDIQRTANRWTTIRFIYGHRSRNVAAHCLAKRAQLLMGSQTWL
        INN    L +      DI  T   +   +  +  RS NV+AH LAK A   + S  WL
Subjt:  INNDRVDLQKATDYAHDIQRTANRWTTIRFIYGHRSRNVAAHCLAKRAQLLMGSQTWL

XP_015382610.1 uncharacterized protein LOC107175578 [Citrus sinensis]2.1e-0726.91Show/hide
Query:  KTKTDIEEERIVNQSVLNALGQGGLNGSGSNTQIWASVIHGPKTQTAAEGYMREIFQREKFLRGQCVNRPSTEAVRDWTPPPQGWVKLNVCVAWYEHEAK
        + K D+E   ++   V NA  +    G   N Q   +     K +   E Y R   Q+ + +R +   +  T+ V  W PP  G+VK+NV  A    +  
Subjt:  KTKTDIEEERIVNQSVLNALGQGGLNGSGSNTQIWASVIHGPKTQTAAEGYMREIFQREKFLRGQCVNRPSTEAVRDWTPPPQGWVKLNVCVAWYEHEAK

Query:  NGLGWILRDYNDPILGAGYKF--------FYHA----WTILI-----TSPLVDESDSVNTISLINNDRVDLQKATDYAHDIQRTANRWTTIRFIYGHRSR
         GLG I+RD    ++ A  K         F  A    W + I        L+ ESD+ + + L+NN +    +      +IQ     +  +   Y HRSR
Subjt:  NGLGWILRDYNDPILGAGYKF--------FYHA----WTILI-----TSPLVDESDSVNTISLINNDRVDLQKATDYAHDIQRTANRWTTIRFIYGHRSR

Query:  NVAAHCLAKRAQLLMGSQTWLGP
        N   H LAK       +  W+GP
Subjt:  NVAAHCLAKRAQLLMGSQTWLGP

XP_015384976.1 uncharacterized protein LOC107176672 [Citrus sinensis]2.5e-0825.52Show/hide
Query:  NTQIWASVIHGPKTQTAAEGYMREIFQREKFLRGQCVNRPSTEAVRDWTPPPQGWVKLNVCVAWYEHEAKNGLGWILRDYNDPILGA--------GYKFF
        N+ I+  V   P+   + +  + E F+R +      +   S+  ++ W PP +G+ K+NV  A    +   GLG ++RD    ++ A        GY F 
Subjt:  NTQIWASVIHGPKTQTAAEGYMREIFQREKFLRGQCVNRPSTEAVRDWTPPPQGWVKLNVCVAWYEHEAKNGLGWILRDYNDPILGA--------GYKFF

Query:  YHA----WTILIT-----SPLVDESDSVNTISLINNDRVDLQKATDYAHDIQRTANRWTTIRFIYGHRSRNVAAHCLAKRAQLLMGSQTWLG
               W + +        L+ ESD+   + L+NN R    +      ++QR    ++++   Y HRS N  A+ LAK A   +    WLG
Subjt:  YHA----WTILIT-----SPLVDESDSVNTISLINNDRVDLQKATDYAHDIQRTANRWTTIRFIYGHRSRNVAAHCLAKRAQLLMGSQTWLG

XP_024033458.1 uncharacterized protein LOC112095586 [Citrus clementina]5.0e-0926.04Show/hide
Query:  NTQIWASVIHGPKTQTAAEGYMREIFQREKFLRGQCVNRPSTEAVRDWTPPPQGWVKLNVCVAWYEHEAKNGLGWILRDYNDPILGA--------GYKFF
        N+ I+  V   P+   + +  + E F+R +      +   S+  ++ W PP +G+ K+NV  A    +   GLG ++RD    ++ A        GY F 
Subjt:  NTQIWASVIHGPKTQTAAEGYMREIFQREKFLRGQCVNRPSTEAVRDWTPPPQGWVKLNVCVAWYEHEAKNGLGWILRDYNDPILGA--------GYKFF

Query:  YHA----WTILIT-----SPLVDESDSVNTISLINNDRVDLQKATDYAHDIQRTANRWTTIRFIYGHRSRNVAAHCLAKRAQLLMGSQTWLG
               W + +T       L+ ESD+   + L+NN R    +      ++QR    ++++   Y HRS N  A+ LAK A   +    WLG
Subjt:  YHA----WTILIT-----SPLVDESDSVNTISLINNDRVDLQKATDYAHDIQRTANRWTTIRFIYGHRSRNVAAHCLAKRAQLLMGSQTWLG

XP_030924668.1 uncharacterized protein LOC115951644 [Quercus lobata]2.8e-0728.81Show/hide
Query:  EKFLRGQCVNRPSTE--AVRDWTPPPQGWVKLNVCVAWYEHEAKNGLGWILRDYNDPILGAGYKFFYHAWTILITSPL-----------------VDESD
        + F+  Q    P     A   W PP QG+VK+N   A + H    GLG I+RD+    LGA       A ++     L                 + E D
Subjt:  EKFLRGQCVNRPSTE--AVRDWTPPPQGWVKLNVCVAWYEHEAKNGLGWILRDYNDPILGAGYKFFYHAWTILITSPL-----------------VDESD

Query:  SVNTISLINNDRVDLQKATDYAHDIQRTANRWTTIRFIYGHRSRNVAAHCLAKRAQLLMGSQTWLGPDCTHLEGFTI
        SV  I+ I   R  L    +   D+     ++++I+F + +RS N+ A  LAK+A  ++GS  W  PD   L+  T+
Subjt:  SVNTISLINNDRVDLQKATDYAHDIQRTANRWTTIRFIYGHRSRNVAAHCLAKRAQLLMGSQTWLGPDCTHLEGFTI

TrEMBL top hitse value%identityAlignment
A0A1J3C7A8 Putative ribonuclease H protein (Fragment)6.6e-0729.36Show/hide
Query:  EKFLRGQCVNRPSTEAVRDWTPPPQGWVKLNVCVAWYEHEAKNGLGWILRDYNDPILGAG-----------------YKFFYHAWTILITSPLVDESDSV
        EK  + +  ++P+  ++  W PPPQGW+K NV   W E   ++G+GW+LRD    ++  G                  ++  H  T L  S ++ E+DS 
Subjt:  EKFLRGQCVNRPSTEAVRDWTPPPQGWVKLNVCVAWYEHEAKNGLGWILRDYNDPILGAG-----------------YKFFYHAWTILITSPLVDESDSV

Query:  NTISLINND
         T+  I+ D
Subjt:  NTISLINND

A0A6D2IMK4 RNase H domain-containing protein8.7e-0728.87Show/hide
Query:  PSTEAV--RDWTPPPQGWVKLNVCVAWYEHEAKNGLGWILRDYNDPILGAGYKFFYHAWTIL-------------ITS----PLVDESDSVNTISLINND
        P T+A     WTPPP GW+K NV  AW      +G+GW+LRD    +L  G K  +   T++             +TS     ++ ESDS   + +I+ +
Subjt:  PSTEAV--RDWTPPPQGWVKLNVCVAWYEHEAKNGLGWILRDYNDPILGAGYKFFYHAWTIL-------------ITS----PLVDESDSVNTISLINND

Query:  RVDLQKATDYAHDIQRTANRWTTIRFIYGHRSRNVAAHCLAK
          D  K    A D+++T       + ++  R+ N+ A  +A+
Subjt:  RVDLQKATDYAHDIQRTANRWTTIRFIYGHRSRNVAAHCLAK

A0A6J1DNV9 uncharacterized protein LOC1110224032.3e-0730.87Show/hide
Query:  WTPPPQGWVKLNVCVAWYEHEAKNGLGWILRDYNDPILGAGYKF--------FYHAWTIL----------ITSPLVDESDSVNTISLINNDRVDLQKATD
        W PPP     LN   +W +   + G+GWI+R ++  I+ AG +F           A  IL          +  PL  E+DS    SL+N  R DL K   
Subjt:  WTPPPQGWVKLNVCVAWYEHEAKNGLGWILRDYNDPILGAGYKF--------FYHAWTIL----------ITSPLVDESDSVNTISLINNDRVDLQKATD

Query:  YAHDIQRTANRWTTIRFIYGHRSRNVAAHCLAKRAQLLMGSQTWLGPDC
           +I    +    + F    R  N  AH LA+RA +L  S  W+  DC
Subjt:  YAHDIQRTANRWTTIRFIYGHRSRNVAAHCLAKRAQLLMGSQTWLGPDC

A0A7G2EL53 (thale cress) hypothetical protein1.9e-0626.6Show/hide
Query:  QIWAS---VIHGPKTQTAAEGYMREIFQREKF-LRGQCVNRPSTEAV-----RDWTPPPQGWVKLNVCVAWYEHEAKNGLGWILRDYNDPILGAGYKFF-
        ++W S   +I   K   A E   R I   E++ +R + +++P    +       W+PP   WVK NV  AW +   + G+GWILRD+ + +L  G +   
Subjt:  QIWAS---VIHGPKTQTAAEGYMREIFQREKF-LRGQCVNRPSTEAV-----RDWTPPPQGWVKLNVCVAWYEHEAKNGLGWILRDYNDPILGAGYKFF-

Query:  -----------YHAWTILITSPL-----VDESDSVNTISLINNDRVDLQKATDYAHDIQRTANRWTTIRFIYGHRSRNVAAHCLAKRA
                      W +L    L     + ESDS  T++LI  D V+    +    DIQ+   R+  ++  +  R  N     +AK +
Subjt:  -----------YHAWTILITSPL-----VDESDSVNTISLINNDRVDLQKATDYAHDIQRTANRWTTIRFIYGHRSRNVAAHCLAKRA

A0A7G2EPD4 (thale cress) hypothetical protein1.9e-0626.6Show/hide
Query:  QIWAS---VIHGPKTQTAAEGYMREIFQREKF-LRGQCVNRPSTEAV-----RDWTPPPQGWVKLNVCVAWYEHEAKNGLGWILRDYNDPILGAGYKFF-
        ++W S   +I   K   A E   R I   E++ +R + +++P    +       W+PP   WVK NV  AW +   + G+GWILRD+ + +L  G +   
Subjt:  QIWAS---VIHGPKTQTAAEGYMREIFQREKF-LRGQCVNRPSTEAV-----RDWTPPPQGWVKLNVCVAWYEHEAKNGLGWILRDYNDPILGAGYKFF-

Query:  -----------YHAWTILITSPL-----VDESDSVNTISLINNDRVDLQKATDYAHDIQRTANRWTTIRFIYGHRSRNVAAHCLAKRA
                      W +L    L     + ESDS  T++LI  D V+    +    DIQ+   R+  ++  +  R  N     +AK +
Subjt:  -----------YHAWTILITSPL-----VDESDSVNTISLINNDRVDLQKATDYAHDIQRTANRWTTIRFIYGHRSRNVAAHCLAKRA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G02650.1 Ribonuclease H-like superfamily protein1.4e-0429.01Show/hide
Query:  WTPPPQGWVKLNVCVAWYEHEAKNGLGWILRDYNDPI--------------LGAGYKFFYHAWTILITSPL---VDESDSVNTISLINNDRVDLQKATDY
        W PPP+GWVK N    + +       GW +R+ N  I              L A    F HA  ++    L     ESDS + ++LINN   D       
Subjt:  WTPPPQGWVKLNVCVAWYEHEAKNGLGWILRDYNDPI--------------LGAGYKFFYHAWTILITSPL---VDESDSVNTISLINNDRVDLQKATDY

Query:  AHDIQRTANRWTTIRFIYGHRSRNVAAHCLA
         +DI+    +       + +R RN AA  LA
Subjt:  AHDIQRTANRWTTIRFIYGHRSRNVAAHCLA

AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein8.6e-0726.47Show/hide
Query:  WTPPPQGWVKLNVCVAWYEHEAKNGLGWILRDYNDPILGAGYKFFYHA------------WTILITS-----PLVDESDSVNTISLINNDRV--DLQKAT
        W  PP  WVK N    W     + G+GWILR+ +  +L  G +                 W +L  S      ++ ESD+   ++L+N+D     LQ A 
Subjt:  WTPPPQGWVKLNVCVAWYEHEAKNGLGWILRDYNDPILGAGYKFFYHA------------WTILITS-----PLVDESDSVNTISLINNDRV--DLQKAT

Query:  DYAHDIQRTANRWTTIRFIYGHRSRNVAAHCLAKRA
        +   DIQ+  + +  ++F +  R  N  A  +A+ +
Subjt:  DYAHDIQRTANRWTTIRFIYGHRSRNVAAHCLAKRA

AT3G23320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein7.3e-0627.61Show/hide
Query:  WTPPPQGWVKLNVCVAWYEHEAKNGLGWILRDYNDPILGAGYKFFYHAWTI-----------------LITSPLVDESDSVNTISLINNDRVDLQKATDY
        W  P   WVK N  V+ +     +GL WI+R+     L  G   F    TI                 L    +  E D++    LI N   +  +   Y
Subjt:  WTPPPQGWVKLNVCVAWYEHEAKNGLGWILRDYNDPILGAGYKFFYHAWTI-----------------LITSPLVDESDSVNTISLINNDRVDLQKATDY

Query:  AHDIQRTANRWTTIRFIYGHRSRNVAAHCLAKRA
           IQ+ +  +TT++F + HR +NV    LAK+A
Subjt:  AHDIQRTANRWTTIRFIYGHRSRNVAAHCLAKRA

AT4G29090.1 Ribonuclease H-like superfamily protein7.0e-0926.12Show/hide
Query:  WTPPPQGWVKLNVCVAWYEHEAKNGLGWILRDYNDPILGAGYKFF------------YHAWTILITSP-----LVDESDSVNTISLINNDRVDLQKATDY
        W PPP  WVK N    W     + G+GW+LR+    +   G +                 W +L  S      ++ ESDS   I ++NND +        
Subjt:  WTPPPQGWVKLNVCVAWYEHEAKNGLGWILRDYNDPILGAGYKFF------------YHAWTILITSP-----LVDESDSVNTISLINNDRVDLQKATDY

Query:  AHDIQRTANRWTTIRFIYGHRSRNVAAHCLAKRA
          D+QR  +++T ++F++  R  N  A  +A+ +
Subjt:  AHDIQRTANRWTTIRFIYGHRSRNVAAHCLAKRA

AT5G65005.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.0e-0425.37Show/hide
Query:  WTPPPQGWVKLNVCVAWYEHEAKNGLGWILRDYNDPILGAGYKFFYH------------AWTILIT-----SPLVDESDSVNTISLINNDRVDLQKATDY
        W+PP +  +K N   + +E    +GLGWILR+    ++  G   F               W I  +       ++ E D+  TI+ + N +    +   +
Subjt:  WTPPPQGWVKLNVCVAWYEHEAKNGLGWILRDYNDPILGAGYKFFYH------------AWTILIT-----SPLVDESDSVNTISLINNDRVDLQKATDY

Query:  AHDIQRTANRWTTIRFIYGHRSRNVAAHCLAKRA
           IQ     + +I F + HR +N  A  LAK+A
Subjt:  AHDIQRTANRWTTIRFIYGHRSRNVAAHCLAKRA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACAACAAGGAGGAGCGGTCGTCGGAGACAGGCCGACGGATGCCTCCACTAAACGAAAAAAAATTAGGGGAATCGAGGGATAGAAGCTTCGATGGAAGGGGCCACAG
GGAGCGCCGGAAATCAGCGGAAACTACCCAAAACGGTTACGAGATTAGGAATACAGACGATAATCACGGGAAGGGAACTCTGAAAACGAACGAAACTTTATTATTCGACC
CGTCGATTATGAAGAAGAAGGGCAAATCAATTATGATAGAAGCGTTAAAAGAGGTTACAATAAAACTTACTTATTTGGAGTCACTCGACCGATCATTACTCACCAAAGCG
GCGATTTCGAAAATAAACAATTACAGAGAGAATCGTGGCATTATCGAAGGGAAGACGAAAACTGATATTGAAGAGGAGAGAATAGTGAATCAGTCGGTGTTAAATGCACT
AGGGCAGGGTGGTCTGAACGGCAGTGGGTCGAATACTCAAATTTGGGCCAGTGTGATTCATGGGCCTAAGACACAAACGGCTGCAGAAGGATATATGCGAGAGATTTTCC
AGAGAGAAAAGTTTCTCCGGGGGCAGTGTGTCAATCGCCCTTCTACAGAGGCAGTTAGGGATTGGACACCGCCCCCACAAGGGTGGGTGAAGCTAAATGTTTGCGTGGCT
TGGTACGAGCATGAAGCAAAAAATGGTTTAGGATGGATTTTGCGAGATTACAACGACCCCATCCTAGGTGCAGGTTACAAGTTTTTTTACCATGCTTGGACGATTTTAAT
CACTTCCCCATTGGTGGATGAATCGGATTCGGTTAATACTATTTCTTTGATTAATAATGATCGTGTAGATCTACAGAAGGCAACAGATTATGCTCATGATATTCAGCGCA
CTGCTAACCGTTGGACGACGATACGTTTTATCTATGGTCATCGTAGCAGGAATGTAGCTGCACATTGTTTAGCAAAGAGAGCCCAGCTTCTTATGGGTTCACAAACTTGG
TTAGGTCCGGATTGTACTCATCTTGAGGGTTTCACTATTCCTAATTAA
mRNA sequenceShow/hide mRNA sequence
ATGGACAACAAGGAGGAGCGGTCGTCGGAGACAGGCCGACGGATGCCTCCACTAAACGAAAAAAAATTAGGGGAATCGAGGGATAGAAGCTTCGATGGAAGGGGCCACAG
GGAGCGCCGGAAATCAGCGGAAACTACCCAAAACGGTTACGAGATTAGGAATACAGACGATAATCACGGGAAGGGAACTCTGAAAACGAACGAAACTTTATTATTCGACC
CGTCGATTATGAAGAAGAAGGGCAAATCAATTATGATAGAAGCGTTAAAAGAGGTTACAATAAAACTTACTTATTTGGAGTCACTCGACCGATCATTACTCACCAAAGCG
GCGATTTCGAAAATAAACAATTACAGAGAGAATCGTGGCATTATCGAAGGGAAGACGAAAACTGATATTGAAGAGGAGAGAATAGTGAATCAGTCGGTGTTAAATGCACT
AGGGCAGGGTGGTCTGAACGGCAGTGGGTCGAATACTCAAATTTGGGCCAGTGTGATTCATGGGCCTAAGACACAAACGGCTGCAGAAGGATATATGCGAGAGATTTTCC
AGAGAGAAAAGTTTCTCCGGGGGCAGTGTGTCAATCGCCCTTCTACAGAGGCAGTTAGGGATTGGACACCGCCCCCACAAGGGTGGGTGAAGCTAAATGTTTGCGTGGCT
TGGTACGAGCATGAAGCAAAAAATGGTTTAGGATGGATTTTGCGAGATTACAACGACCCCATCCTAGGTGCAGGTTACAAGTTTTTTTACCATGCTTGGACGATTTTAAT
CACTTCCCCATTGGTGGATGAATCGGATTCGGTTAATACTATTTCTTTGATTAATAATGATCGTGTAGATCTACAGAAGGCAACAGATTATGCTCATGATATTCAGCGCA
CTGCTAACCGTTGGACGACGATACGTTTTATCTATGGTCATCGTAGCAGGAATGTAGCTGCACATTGTTTAGCAAAGAGAGCCCAGCTTCTTATGGGTTCACAAACTTGG
TTAGGTCCGGATTGTACTCATCTTGAGGGTTTCACTATTCCTAATTAA
Protein sequenceShow/hide protein sequence
MDNKEERSSETGRRMPPLNEKKLGESRDRSFDGRGHRERRKSAETTQNGYEIRNTDDNHGKGTLKTNETLLFDPSIMKKKGKSIMIEALKEVTIKLTYLESLDRSLLTKA
AISKINNYRENRGIIEGKTKTDIEEERIVNQSVLNALGQGGLNGSGSNTQIWASVIHGPKTQTAAEGYMREIFQREKFLRGQCVNRPSTEAVRDWTPPPQGWVKLNVCVA
WYEHEAKNGLGWILRDYNDPILGAGYKFFYHAWTILITSPLVDESDSVNTISLINNDRVDLQKATDYAHDIQRTANRWTTIRFIYGHRSRNVAAHCLAKRAQLLMGSQTW
LGPDCTHLEGFTIPN