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Tan0006670 (gene) of Snake gourd v1 genome

Gene IDTan0006670
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionDNA/RNA polymerases superfamily protein
Genome locationLG11:35899766..35899975
RNA-Seq ExpressionTan0006670
SyntenyTan0006670
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0004519 - endonuclease activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0055470.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]3.2e-2489.06Show/hide
Query:  MDFLFTHYASMDCHRKEVVFRKPGLAEVIFRGERKIIPTSLISALKAEKLLRKGCTAFLAHVVE
        MDFLFTHYASM+CHRKEV FRKPGL EV+FRGERKIIPTSL SALK EKLLRKGCT FLAHVVE
Subjt:  MDFLFTHYASMDCHRKEVVFRKPGLAEVIFRGERKIIPTSLISALKAEKLLRKGCTAFLAHVVE

KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]5.5e-2489.06Show/hide
Query:  MDFLFTHYASMDCHRKEVVFRKPGLAEVIFRGERKIIPTSLISALKAEKLLRKGCTAFLAHVVE
        MDFLFTHYASM+CH+KEV FRKPG  EV+FRGERKIIPTSLISALKAEKLLRKGC AFLAHVVE
Subjt:  MDFLFTHYASMDCHRKEVVFRKPGLAEVIFRGERKIIPTSLISALKAEKLLRKGCTAFLAHVVE

TYK08952.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]3.2e-2489.06Show/hide
Query:  MDFLFTHYASMDCHRKEVVFRKPGLAEVIFRGERKIIPTSLISALKAEKLLRKGCTAFLAHVVE
        MDFLFTHYASM+CHRKEV FRKPGL EV+FRGERKIIPTSL SALK EKLLRKGCT FLAHVVE
Subjt:  MDFLFTHYASMDCHRKEVVFRKPGLAEVIFRGERKIIPTSLISALKAEKLLRKGCTAFLAHVVE

TYK26572.1 putative Retrotransposon protein [Cucumis melo var. makuwa]5.5e-2489.06Show/hide
Query:  MDFLFTHYASMDCHRKEVVFRKPGLAEVIFRGERKIIPTSLISALKAEKLLRKGCTAFLAHVVE
        MDFLFTHYASM+CH+KEV FRKPG  EV+FRGERKIIPTSLISALKAEKLLRKGC AFLAHVVE
Subjt:  MDFLFTHYASMDCHRKEVVFRKPGLAEVIFRGERKIIPTSLISALKAEKLLRKGCTAFLAHVVE

XP_038877048.1 uncharacterized protein LOC120069376 [Benincasa hispida]5.0e-2590.62Show/hide
Query:  MDFLFTHYASMDCHRKEVVFRKPGLAEVIFRGERKIIPTSLISALKAEKLLRKGCTAFLAHVVE
        MDF FTHYASMDCHRKEV FRKPGLAE++FRGE+KIIPTSLISALKAEKLLRKGCT+FLAHVVE
Subjt:  MDFLFTHYASMDCHRKEVVFRKPGLAEVIFRGERKIIPTSLISALKAEKLLRKGCTAFLAHVVE

TrEMBL top hitse value%identityAlignment
A0A5A7UJV1 DNA/RNA polymerases superfamily protein1.6e-2489.06Show/hide
Query:  MDFLFTHYASMDCHRKEVVFRKPGLAEVIFRGERKIIPTSLISALKAEKLLRKGCTAFLAHVVE
        MDFLFTHYASM+CHRKEV FRKPGL EV+FRGERKIIPTSL SALK EKLLRKGCT FLAHVVE
Subjt:  MDFLFTHYASMDCHRKEVVFRKPGLAEVIFRGERKIIPTSLISALKAEKLLRKGCTAFLAHVVE

A0A5A7V9N3 Reverse transcriptase2.7e-2489.06Show/hide
Query:  MDFLFTHYASMDCHRKEVVFRKPGLAEVIFRGERKIIPTSLISALKAEKLLRKGCTAFLAHVVE
        MDFLFTHYASM+CH+KEV FRKPG  EV+FRGERKIIPTSLISALKAEKLLRKGC AFLAHVVE
Subjt:  MDFLFTHYASMDCHRKEVVFRKPGLAEVIFRGERKIIPTSLISALKAEKLLRKGCTAFLAHVVE

A0A5D3BTP3 Reverse transcriptase3.5e-2489.06Show/hide
Query:  MDFLFTHYASMDCHRKEVVFRKPGLAEVIFRGERKIIPTSLISALKAEKLLRKGCTAFLAHVVE
        MDFLFTHYASM+CHRKEV F+KPG  EVIF+GER IIPTSLISALKAEKLLRKGCTAFLAHVVE
Subjt:  MDFLFTHYASMDCHRKEVVFRKPGLAEVIFRGERKIIPTSLISALKAEKLLRKGCTAFLAHVVE

A0A5D3CCC7 DNA/RNA polymerases superfamily protein1.6e-2489.06Show/hide
Query:  MDFLFTHYASMDCHRKEVVFRKPGLAEVIFRGERKIIPTSLISALKAEKLLRKGCTAFLAHVVE
        MDFLFTHYASM+CHRKEV FRKPGL EV+FRGERKIIPTSL SALK EKLLRKGCT FLAHVVE
Subjt:  MDFLFTHYASMDCHRKEVVFRKPGLAEVIFRGERKIIPTSLISALKAEKLLRKGCTAFLAHVVE

A0A5D3DSY7 Putative Retrotransposon protein2.7e-2489.06Show/hide
Query:  MDFLFTHYASMDCHRKEVVFRKPGLAEVIFRGERKIIPTSLISALKAEKLLRKGCTAFLAHVVE
        MDFLFTHYASM+CH+KEV FRKPG  EV+FRGERKIIPTSLISALKAEKLLRKGC AFLAHVVE
Subjt:  MDFLFTHYASMDCHRKEVVFRKPGLAEVIFRGERKIIPTSLISALKAEKLLRKGCTAFLAHVVE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTTCTTATTCACTCATTATGCTTCCATGGATTGCCATAGAAAGGAAGTTGTGTTCAGGAAACCAGGATTGGCTGAAGTGATTTTCAGGGGTGAAAGAAAGATTAT
TCCTACAAGTTTGATTTCAGCATTAAAAGCGGAGAAGTTATTGAGGAAAGGTTGTACGGCGTTTCTTGCACATGTAGTAGAGTGCGGGAGGAAAAGCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGATTTCTTATTCACTCATTATGCTTCCATGGATTGCCATAGAAAGGAAGTTGTGTTCAGGAAACCAGGATTGGCTGAAGTGATTTTCAGGGGTGAAAGAAAGATTAT
TCCTACAAGTTTGATTTCAGCATTAAAAGCGGAGAAGTTATTGAGGAAAGGTTGTACGGCGTTTCTTGCACATGTAGTAGAGTGCGGGAGGAAAAGCTAA
Protein sequenceShow/hide protein sequence
MDFLFTHYASMDCHRKEVVFRKPGLAEVIFRGERKIIPTSLISALKAEKLLRKGCTAFLAHVVECGRKS