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Tan0006678 (gene) of Snake gourd v1 genome

Gene IDTan0006678
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationLG01:25640995..25646507
RNA-Seq ExpressionTan0006678
SyntenyTan0006678
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EEC68026.1 hypothetical protein OsI_35837 [Oryza sativa Indica Group]2.5e-0525.35Show/hide
Query:  DDTLLFFKANWANCEQIKEIFNMYAKAFGQIINLDKCSFM------------VSGNMKAT----------------KASSGKF-----------------
        DDTLLFFKAN       K+  + YA   GQ+IN  KCS +            +S  ++ T                + S GKF                 
Subjt:  DDTLLFFKANWANCEQIKEIFNMYAKAFGQIINLDKCSFM------------VSGNMKAT----------------KASSGKF-----------------

Query:  -----------KMGITSRYVRILG---LTEKVFCKSLWVNPSLKDKRVKNLLEEDGKWSYERIKNSFGKADVSTILSTLTGSRLSKDEIICNQEAKGIFS
                   K  I +  V ++G   L +   C+ +WV+         +L++ DG W  +RI   F   D   IL+    +R  +D +  + +  G+FS
Subjt:  -----------KMGITSRYVRILG---LTEKVFCKSLWVNPSLKDKRVKNLLEEDGKWSYERIKNSFGKADVSTILSTLTGSRLSKDEIICNQEAKGIFS

Query:  VKSVYMLTLDISK
        V+S Y L L +++
Subjt:  VKSVYMLTLDISK

OMO58928.1 reverse transcriptase [Corchorus capsularis]2.9e-0626.78Show/hide
Query:  DDTLLFFKANWANCEQIKEIFNMYAKAFGQIINLDKCSFMVSGNMKATKASSGKFKMGITSRYVRILGLTEKVFCKSLWVNPSLKDKRVKNLLE------
        DD+LLF +A+ A+C+ + +I   +  A GQ IN+DK S M S N+      +    +G+     RI+   + +    +   P    +  + L+       
Subjt:  DDTLLFFKANWANCEQIKEIFNMYAKAFGQIINLDKCSFMVSGNMKATKASSGKFKMGITSRYVRILGLTEKVFCKSLWVNPSLKDKRVKNLLE------

Query:  -----EDGKWSYERIKNSFGKADVSTILSTLTGSRLSKDEIICNQEAKGIFSVKSVYMLT-LDISKATQPP------CQIPWS
             E   W  E+++  F + D+  IL        S D +I N  + GIFSV+  YM+  + + +  QP       C+I WS
Subjt:  -----EDGKWSYERIKNSFGKADVSTILSTLTGSRLSKDEIICNQEAKGIFSVKSVYMLT-LDISKATQPP------CQIPWS

VFQ67010.1 unnamed protein product [Cuscuta campestris]1.7e-0631.84Show/hide
Query:  LEDDTLLFFKANWANCEQIKEIFNMYAKAFGQIINLDKCSFMVSGNMKATKASSGKFKMGIT-----SRYVRILG------------LTEKVFCK-SLWV
        L DD+L FFKA  A   +I  I ++YA A GQ INL+K +   S N      +S   ++GIT      RY+ +L             + EK + +   W 
Subjt:  LEDDTLLFFKANWANCEQIKEIFNMYAKAFGQIINLDKCSFMVSGNMKATKASSGKFKMGIT-----SRYVRILG------------LTEKVFCK-SLWV

Query:  NPSL-----KDKRVKNLLEEDGKWSYERIKNSFGKADVSTILSTLTGSRLSKDEIICNQEAKGIFSVKSVY-MLTLDIS
        N  L     +D R    L +DG W ++ I + F   D   I +         D++I  ++  G++SVKS Y MLT D S
Subjt:  NPSL-----KDKRVKNLLEEDGKWSYERIKNSFGKADVSTILSTLTGSRLSKDEIICNQEAKGIFSVKSVY-MLTLDIS

XP_015387368.1 uncharacterized protein LOC107177676 [Citrus sinensis]7.7e-0744Show/hide
Query:  DDTLLFFKANWANCEQIKEIFNMYAKAFGQIINLDKCSFMVSGNMKATKASSGK--FKMGITSRYVRILGLTEKV
        DD L+F KA  ANC+ +K IF+ Y  A GQ+INLDK S   SGN K  + ++ K  F + + SR+ + LGL   +
Subjt:  DDTLLFFKANWANCEQIKEIFNMYAKAFGQIINLDKCSFMVSGNMKATKASSGK--FKMGITSRYVRILGLTEKV

XP_024041921.1 uncharacterized protein LOC112099052 [Citrus clementina]8.6e-0639.74Show/hide
Query:  ILEDDTLLFFKANWANCEQIKEIFNMYAKAFGQIINLDKCSFMVSGNMKATKASSGK--FKMGITSRYVRILGLTEKV
        +  DD+L+F +A+ A+C+ +K IF+ Y+ A  Q+ N +K S  +SGN++  +ASS K  F++ I SR+ R LGL   +
Subjt:  ILEDDTLLFFKANWANCEQIKEIFNMYAKAFGQIINLDKCSFMVSGNMKATKASSGK--FKMGITSRYVRILGLTEKV

TrEMBL top hitse value%identityAlignment
A0A1R3GLF3 Reverse transcriptase1.4e-0626.78Show/hide
Query:  DDTLLFFKANWANCEQIKEIFNMYAKAFGQIINLDKCSFMVSGNMKATKASSGKFKMGITSRYVRILGLTEKVFCKSLWVNPSLKDKRVKNLLE------
        DD+LLF +A+ A+C+ + +I   +  A GQ IN+DK S M S N+      +    +G+     RI+   + +    +   P    +  + L+       
Subjt:  DDTLLFFKANWANCEQIKEIFNMYAKAFGQIINLDKCSFMVSGNMKATKASSGKFKMGITSRYVRILGLTEKVFCKSLWVNPSLKDKRVKNLLE------

Query:  -----EDGKWSYERIKNSFGKADVSTILSTLTGSRLSKDEIICNQEAKGIFSVKSVYMLT-LDISKATQPP------CQIPWS
             E   W  E+++  F + D+  IL        S D +I N  + GIFSV+  YM+  + + +  QP       C+I WS
Subjt:  -----EDGKWSYERIKNSFGKADVSTILSTLTGSRLSKDEIICNQEAKGIFSVKSVYMLT-LDISKATQPP------CQIPWS

A0A484KNW8 Uncharacterized protein8.4e-0731.84Show/hide
Query:  LEDDTLLFFKANWANCEQIKEIFNMYAKAFGQIINLDKCSFMVSGNMKATKASSGKFKMGIT-----SRYVRILG------------LTEKVFCK-SLWV
        L DD+L FFKA  A   +I  I ++YA A GQ INL+K +   S N      +S   ++GIT      RY+ +L             + EK + +   W 
Subjt:  LEDDTLLFFKANWANCEQIKEIFNMYAKAFGQIINLDKCSFMVSGNMKATKASSGKFKMGIT-----SRYVRILG------------LTEKVFCK-SLWV

Query:  NPSL-----KDKRVKNLLEEDGKWSYERIKNSFGKADVSTILSTLTGSRLSKDEIICNQEAKGIFSVKSVY-MLTLDIS
        N  L     +D R    L +DG W ++ I + F   D   I +         D++I  ++  G++SVKS Y MLT D S
Subjt:  NPSL-----KDKRVKNLLEEDGKWSYERIKNSFGKADVSTILSTLTGSRLSKDEIICNQEAKGIFSVKSVY-MLTLDIS

A0A6P9DWY7 uncharacterized protein LOC1183440311.6e-0530.29Show/hide
Query:  DDTLLFFKANWANCEQIKEIFNMYAKAFGQIINLDKCSFMVSGNMKATKASSGKFKMGITSR-----YVRILGLTEKVFCKSLWVNPSLKDK---RVKNL
        DD+LLF KAN      +  +   Y  A GQ +NL K S M S N   T  S+  + + I  R     Y + LGL         W++ S + K    VKNL
Subjt:  DDTLLFFKANWANCEQIKEIFNMYAKAFGQIINLDKCSFMVSGNMKATKASSGKFKMGITSR-----YVRILGLTEKVFCKSLWVNPSLKDK---RVKNL

Query:  LE----------EDGKWSYERIKNSFGKADVSTILSTLTGSRLSKDEIICNQEAKGIFSVKSVYMLTLDISKATQ
         E          E  +W  + I+++F   +   I+ T   +  + D II +    G FSV+S Y +  D   A Q
Subjt:  LE----------EDGKWSYERIKNSFGKADVSTILSTLTGSRLSKDEIICNQEAKGIFSVKSVYMLTLDISKATQ

A0A803PQ54 Uncharacterized protein2.2e-0727.16Show/hide
Query:  ILEDDTLLFFKANWANCEQIKEIFNMYAKAFGQIINLDKCSFMVSGNMKATKASSGKFKMGITSRYVRILGLTEKVFCKSLWVNPSLKDKRVKNLLEEDG
        +  DDTL+F KA  ++C  ++    +Y +A GQ +N  K S + S N  +           ++  +   LGL+ + F       P     RV   +  +G
Subjt:  ILEDDTLLFFKANWANCEQIKEIFNMYAKAFGQIINLDKCSFMVSGNMKATKASSGKFKMGITSRYVRILGLTEKVFCKSLWVNPSLKDKRVKNLLEEDG

Query:  KWSYERIKNSFGKADVSTILSTLTGSRLSKDEIICNQEAKGIFSVKSVYMLTLDISKATQPP
         W   ++ N F    V+TIL    G     D +I    + G+ +VKS Y L    + +T PP
Subjt:  KWSYERIKNSFGKADVSTILSTLTGSRLSKDEIICNQEAKGIFSVKSVYMLTLDISKATQPP

B8BK40 Uncharacterized protein1.2e-0525.35Show/hide
Query:  DDTLLFFKANWANCEQIKEIFNMYAKAFGQIINLDKCSFM------------VSGNMKAT----------------KASSGKF-----------------
        DDTLLFFKAN       K+  + YA   GQ+IN  KCS +            +S  ++ T                + S GKF                 
Subjt:  DDTLLFFKANWANCEQIKEIFNMYAKAFGQIINLDKCSFM------------VSGNMKAT----------------KASSGKF-----------------

Query:  -----------KMGITSRYVRILG---LTEKVFCKSLWVNPSLKDKRVKNLLEEDGKWSYERIKNSFGKADVSTILSTLTGSRLSKDEIICNQEAKGIFS
                   K  I +  V ++G   L +   C+ +WV+         +L++ DG W  +RI   F   D   IL+    +R  +D +  + +  G+FS
Subjt:  -----------KMGITSRYVRILG---LTEKVFCKSLWVNPSLKDKRVKNLLEEDGKWSYERIKNSFGKADVSTILSTLTGSRLSKDEIICNQEAKGIFS

Query:  VKSVYMLTLDISK
        V+S Y L L +++
Subjt:  VKSVYMLTLDISK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGACATTGAGAAAATTCTTGAAGATGACACTTTGTTGTTCTTTAAAGCTAACTGGGCCAATTGCGAGCAAATCAAGGAAATCTTCAATATGTATGCGAAAGCGTT
TGGACAAATTATTAACTTAGATAAATGTTCTTTCATGGTTAGCGGGAACATGAAAGCCACTAAGGCTTCAAGTGGAAAGTTCAAAATGGGCATCACATCTCGATATGTGA
GGATCCTTGGCCTAACAGAAAAGGTGTTTTGCAAGTCTCTTTGGGTCAATCCTAGTCTAAAGGACAAGAGGGTCAAAAACCTTTTGGAGGAGGATGGTAAATGGAGTTAT
GAGCGTATCAAAAATTCTTTTGGCAAAGCTGACGTTTCTACTATTCTTAGCACCCTTACAGGTAGCAGGCTATCTAAAGATGAGATAATTTGCAACCAGGAAGCTAAAGG
CATATTCTCAGTTAAAAGCGTGTATATGCTGACCCTTGACATTTCTAAAGCAACACAACCTCCTTGTCAGATTCCTTGGAGTCCAAAGACGTTTGGAATCTTTTCTGGGA
AGATCCAGCCGGTTCCAAAAGCTAAAATTAATGCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGGACATTGAGAAAATTCTTGAAGATGACACTTTGTTGTTCTTTAAAGCTAACTGGGCCAATTGCGAGCAAATCAAGGAAATCTTCAATATGTATGCGAAAGCGTT
TGGACAAATTATTAACTTAGATAAATGTTCTTTCATGGTTAGCGGGAACATGAAAGCCACTAAGGCTTCAAGTGGAAAGTTCAAAATGGGCATCACATCTCGATATGTGA
GGATCCTTGGCCTAACAGAAAAGGTGTTTTGCAAGTCTCTTTGGGTCAATCCTAGTCTAAAGGACAAGAGGGTCAAAAACCTTTTGGAGGAGGATGGTAAATGGAGTTAT
GAGCGTATCAAAAATTCTTTTGGCAAAGCTGACGTTTCTACTATTCTTAGCACCCTTACAGGTAGCAGGCTATCTAAAGATGAGATAATTTGCAACCAGGAAGCTAAAGG
CATATTCTCAGTTAAAAGCGTGTATATGCTGACCCTTGACATTTCTAAAGCAACACAACCTCCTTGTCAGATTCCTTGGAGTCCAAAGACGTTTGGAATCTTTTCTGGGA
AGATCCAGCCGGTTCCAAAAGCTAAAATTAATGCTTGA
Protein sequenceShow/hide protein sequence
MEDIEKILEDDTLLFFKANWANCEQIKEIFNMYAKAFGQIINLDKCSFMVSGNMKATKASSGKFKMGITSRYVRILGLTEKVFCKSLWVNPSLKDKRVKNLLEEDGKWSY
ERIKNSFGKADVSTILSTLTGSRLSKDEIICNQEAKGIFSVKSVYMLTLDISKATQPPCQIPWSPKTFGIFSGKIQPVPKAKINA