CuGenDBv2

Gene ID	Tan0006690
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Gag/pol protein
Genome location	LG06:50732226..50732804
RNA-Seq Expression	Tan0006690
Synteny	Tan0006690
Gene Ontology terms	GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008234 - cysteine-type peptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0044955.1 gag/pol protein [Cucumis melo var. makuwa]

4.0e-72

70.83

Show/hide

Query:  MSSSIIALLKSDRLTGENFTTWKSNLNTILIVDDLRLVLTRECPQIPARNAPQSVKEAYDRWIKANDKAKVYILASVSEVLAKKHEGMVSAREIMSSLQE
        M+S+ + +L +D+L G N+ +WK+ +NT+LI+DDLR VL  ECPQ+PA NA ++V+E Y+RW KAN+KA+ YILAS+SEVLAKKHE M++AREIM SLQE
Subjt:  MSSSIIALLKSDRLTGENFTTWKSNLNTILIVDDLRLVLTRECPQIPARNAPQSVKEAYDRWIKANDKAKVYILASVSEVLAKKHEGMVSAREIMSSLQE

Query:  MFGQPSGQIRHESLKYVYNSRMKEGSSVREHVLDLMVHFNVAEMNGVVIDEQSQVSFILESLPKSFLQFRSNAVINKIEYNLTTLLNELQTF
        MFGQ S QI+H++LKY+YN+RM EG+SVREHVL++MVHFNVAEMNG VIDE SQVSFILESLP+SFLQFRSNAV+NKI Y LTTLLNELQTF
Subjt:  MFGQPSGQIRHESLKYVYNSRMKEGSSVREHVLDLMVHFNVAEMNGVVIDEQSQVSFILESLPKSFLQFRSNAVINKIEYNLTTLLNELQTF

KAA0054490.1 gag/pol protein [Cucumis melo var. makuwa]

4.0e-72

70.83

Show/hide

Query:  MSSSIIALLKSDRLTGENFTTWKSNLNTILIVDDLRLVLTRECPQIPARNAPQSVKEAYDRWIKANDKAKVYILASVSEVLAKKHEGMVSAREIMSSLQE
        M+S+ + +L +D+L G N+ +WK+ +NT+LI+DDLR VL  ECPQ+PA NA ++V+E Y+RW KAN+KA+ YILAS+SEVLAKKHE M++AREIM SLQE
Subjt:  MSSSIIALLKSDRLTGENFTTWKSNLNTILIVDDLRLVLTRECPQIPARNAPQSVKEAYDRWIKANDKAKVYILASVSEVLAKKHEGMVSAREIMSSLQE

Query:  MFGQPSGQIRHESLKYVYNSRMKEGSSVREHVLDLMVHFNVAEMNGVVIDEQSQVSFILESLPKSFLQFRSNAVINKIEYNLTTLLNELQTF
        MFGQ S QI+H++LKY+YN+RM EG+SVREHVL++MVHFNVAEMNG VIDE SQVSFILESLP+SFLQFRSNAV+NKI Y LTTLLNELQTF
Subjt:  MFGQPSGQIRHESLKYVYNSRMKEGSSVREHVLDLMVHFNVAEMNGVVIDEQSQVSFILESLPKSFLQFRSNAVINKIEYNLTTLLNELQTF

KAA0061339.1 gag/pol protein [Cucumis melo var. makuwa]

1.8e-72

71.35

Show/hide

Query:  MSSSIIALLKSDRLTGENFTTWKSNLNTILIVDDLRLVLTRECPQIPARNAPQSVKEAYDRWIKANDKAKVYILASVSEVLAKKHEGMVSAREIMSSLQE
        M+S+ + +L +D+L G N+  WK+ +NT+LI+DDLR VL  ECPQ+PA NA Q+V+E Y+RW KAN+KA+ YILAS+SEVLAKKHE M++AREIM SLQE
Subjt:  MSSSIIALLKSDRLTGENFTTWKSNLNTILIVDDLRLVLTRECPQIPARNAPQSVKEAYDRWIKANDKAKVYILASVSEVLAKKHEGMVSAREIMSSLQE

Query:  MFGQPSGQIRHESLKYVYNSRMKEGSSVREHVLDLMVHFNVAEMNGVVIDEQSQVSFILESLPKSFLQFRSNAVINKIEYNLTTLLNELQTF
        MFGQ S QI+H++LKY+YN+RM EG+SVREHVL++MVHFNVAEMNG VIDE SQVSFILESLP+SFLQFRSNAV+NKI Y LTTLLNELQTF
Subjt:  MFGQPSGQIRHESLKYVYNSRMKEGSSVREHVLDLMVHFNVAEMNGVVIDEQSQVSFILESLPKSFLQFRSNAVINKIEYNLTTLLNELQTF

KAA0062993.1 gag/pol protein [Cucumis melo var. makuwa]

2.3e-72

70.83

Show/hide

Query:  MSSSIIALLKSDRLTGENFTTWKSNLNTILIVDDLRLVLTRECPQIPARNAPQSVKEAYDRWIKANDKAKVYILASVSEVLAKKHEGMVSAREIMSSLQE
        M+S+ + +L +D+L G N+ +WK+ +NT+LI+DDLR VL +ECPQ+PA NA ++V+E Y+RW KAN+KA+ YILAS+SEVLAKKHE M++AREIM SLQE
Subjt:  MSSSIIALLKSDRLTGENFTTWKSNLNTILIVDDLRLVLTRECPQIPARNAPQSVKEAYDRWIKANDKAKVYILASVSEVLAKKHEGMVSAREIMSSLQE

Query:  MFGQPSGQIRHESLKYVYNSRMKEGSSVREHVLDLMVHFNVAEMNGVVIDEQSQVSFILESLPKSFLQFRSNAVINKIEYNLTTLLNELQTF
        MFGQ S QI+H++LKY+YN+RM EG+SVREHVL++MVHFNVAEMNG VIDE SQVSFILESLP+SFLQFRSNAV+NKI Y LTTLLNELQTF
Subjt:  MFGQPSGQIRHESLKYVYNSRMKEGSSVREHVLDLMVHFNVAEMNGVVIDEQSQVSFILESLPKSFLQFRSNAVINKIEYNLTTLLNELQTF

TYK14550.1 gag/pol protein [Cucumis melo var. makuwa]

4.0e-72

70.83

Show/hide

Query:  MSSSIIALLKSDRLTGENFTTWKSNLNTILIVDDLRLVLTRECPQIPARNAPQSVKEAYDRWIKANDKAKVYILASVSEVLAKKHEGMVSAREIMSSLQE
        M+S+ + +L +D+L G N+ +WK+ +NT+LI+DDLR VL  ECPQ+PA NA ++V+E Y+RW KAN+KA+ YILAS+SEVLAKKHE M++AREIM SLQE
Subjt:  MSSSIIALLKSDRLTGENFTTWKSNLNTILIVDDLRLVLTRECPQIPARNAPQSVKEAYDRWIKANDKAKVYILASVSEVLAKKHEGMVSAREIMSSLQE

Query:  MFGQPSGQIRHESLKYVYNSRMKEGSSVREHVLDLMVHFNVAEMNGVVIDEQSQVSFILESLPKSFLQFRSNAVINKIEYNLTTLLNELQTF
        MFGQ S QI+H++LKY+YN+RM EG+SVREHVL++MVHFNVAEMNG VIDE SQVSFILESLP+SFLQFRSNAV+NKI Y LTTLLNELQTF
Subjt:  MFGQPSGQIRHESLKYVYNSRMKEGSSVREHVLDLMVHFNVAEMNGVVIDEQSQVSFILESLPKSFLQFRSNAVINKIEYNLTTLLNELQTF

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SMH8 Gag/pol protein

1.9e-72

70.83

Show/hide

Query:  MSSSIIALLKSDRLTGENFTTWKSNLNTILIVDDLRLVLTRECPQIPARNAPQSVKEAYDRWIKANDKAKVYILASVSEVLAKKHEGMVSAREIMSSLQE
        M+S+ + +L +D+L G N+ +WK+ +NT+LI+DDLR VL  ECPQ+PA NA ++V+E Y+RW KAN+KA+ YILAS+SEVLAKKHE M++AREIM SLQE
Subjt:  MSSSIIALLKSDRLTGENFTTWKSNLNTILIVDDLRLVLTRECPQIPARNAPQSVKEAYDRWIKANDKAKVYILASVSEVLAKKHEGMVSAREIMSSLQE

Query:  MFGQPSGQIRHESLKYVYNSRMKEGSSVREHVLDLMVHFNVAEMNGVVIDEQSQVSFILESLPKSFLQFRSNAVINKIEYNLTTLLNELQTF
        MFGQ S QI+H++LKY+YN+RM EG+SVREHVL++MVHFNVAEMNG VIDE SQVSFILESLP+SFLQFRSNAV+NKI Y LTTLLNELQTF
Subjt:  MFGQPSGQIRHESLKYVYNSRMKEGSSVREHVLDLMVHFNVAEMNGVVIDEQSQVSFILESLPKSFLQFRSNAVINKIEYNLTTLLNELQTF

A0A5A7TU93 Gag/pol protein

1.9e-72

70.83

Show/hide

Query:  MSSSIIALLKSDRLTGENFTTWKSNLNTILIVDDLRLVLTRECPQIPARNAPQSVKEAYDRWIKANDKAKVYILASVSEVLAKKHEGMVSAREIMSSLQE
        M+S+ + +L +D+L G N+ +WK+ +NT+LI+DDLR VL  ECPQ+PA NA ++V+E Y+RW KAN+KA+ YILAS+SEVLAKKHE M++AREIM SLQE
Subjt:  MSSSIIALLKSDRLTGENFTTWKSNLNTILIVDDLRLVLTRECPQIPARNAPQSVKEAYDRWIKANDKAKVYILASVSEVLAKKHEGMVSAREIMSSLQE

Query:  MFGQPSGQIRHESLKYVYNSRMKEGSSVREHVLDLMVHFNVAEMNGVVIDEQSQVSFILESLPKSFLQFRSNAVINKIEYNLTTLLNELQTF
        MFGQ S QI+H++LKY+YN+RM EG+SVREHVL++MVHFNVAEMNG VIDE SQVSFILESLP+SFLQFRSNAV+NKI Y LTTLLNELQTF
Subjt:  MFGQPSGQIRHESLKYVYNSRMKEGSSVREHVLDLMVHFNVAEMNGVVIDEQSQVSFILESLPKSFLQFRSNAVINKIEYNLTTLLNELQTF

A0A5A7V4M1 Gag/pol protein

1.1e-72

70.83

Show/hide

Query:  MSSSIIALLKSDRLTGENFTTWKSNLNTILIVDDLRLVLTRECPQIPARNAPQSVKEAYDRWIKANDKAKVYILASVSEVLAKKHEGMVSAREIMSSLQE
        M+S+ + +L +D+L G N+ +WK+ +NT+LI+DDLR VL +ECPQ+PA NA ++V+E Y+RW KAN+KA+ YILAS+SEVLAKKHE M++AREIM SLQE
Subjt:  MSSSIIALLKSDRLTGENFTTWKSNLNTILIVDDLRLVLTRECPQIPARNAPQSVKEAYDRWIKANDKAKVYILASVSEVLAKKHEGMVSAREIMSSLQE

Query:  MFGQPSGQIRHESLKYVYNSRMKEGSSVREHVLDLMVHFNVAEMNGVVIDEQSQVSFILESLPKSFLQFRSNAVINKIEYNLTTLLNELQTF
        MFGQ S QI+H++LKY+YN+RM EG+SVREHVL++MVHFNVAEMNG VIDE SQVSFILESLP+SFLQFRSNAV+NKI Y LTTLLNELQTF
Subjt:  MFGQPSGQIRHESLKYVYNSRMKEGSSVREHVLDLMVHFNVAEMNGVVIDEQSQVSFILESLPKSFLQFRSNAVINKIEYNLTTLLNELQTF

A0A5A7V6N0 Gag/pol protein

8.6e-73

71.35

Show/hide

Query:  MSSSIIALLKSDRLTGENFTTWKSNLNTILIVDDLRLVLTRECPQIPARNAPQSVKEAYDRWIKANDKAKVYILASVSEVLAKKHEGMVSAREIMSSLQE
        M+S+ + +L +D+L G N+  WK+ +NT+LI+DDLR VL  ECPQ+PA NA Q+V+E Y+RW KAN+KA+ YILAS+SEVLAKKHE M++AREIM SLQE
Subjt:  MSSSIIALLKSDRLTGENFTTWKSNLNTILIVDDLRLVLTRECPQIPARNAPQSVKEAYDRWIKANDKAKVYILASVSEVLAKKHEGMVSAREIMSSLQE

Query:  MFGQPSGQIRHESLKYVYNSRMKEGSSVREHVLDLMVHFNVAEMNGVVIDEQSQVSFILESLPKSFLQFRSNAVINKIEYNLTTLLNELQTF
        MFGQ S QI+H++LKY+YN+RM EG+SVREHVL++MVHFNVAEMNG VIDE SQVSFILESLP+SFLQFRSNAV+NKI Y LTTLLNELQTF
Subjt:  MFGQPSGQIRHESLKYVYNSRMKEGSSVREHVLDLMVHFNVAEMNGVVIDEQSQVSFILESLPKSFLQFRSNAVINKIEYNLTTLLNELQTF

A0A5D3CPJ6 Gag/pol protein

1.9e-72

70.83

Show/hide

Query:  MSSSIIALLKSDRLTGENFTTWKSNLNTILIVDDLRLVLTRECPQIPARNAPQSVKEAYDRWIKANDKAKVYILASVSEVLAKKHEGMVSAREIMSSLQE
        M+S+ + +L +D+L G N+ +WK+ +NT+LI+DDLR VL  ECPQ+PA NA ++V+E Y+RW KAN+KA+ YILAS+SEVLAKKHE M++AREIM SLQE
Subjt:  MSSSIIALLKSDRLTGENFTTWKSNLNTILIVDDLRLVLTRECPQIPARNAPQSVKEAYDRWIKANDKAKVYILASVSEVLAKKHEGMVSAREIMSSLQE

Query:  MFGQPSGQIRHESLKYVYNSRMKEGSSVREHVLDLMVHFNVAEMNGVVIDEQSQVSFILESLPKSFLQFRSNAVINKIEYNLTTLLNELQTF
        MFGQ S QI+H++LKY+YN+RM EG+SVREHVL++MVHFNVAEMNG VIDE SQVSFILESLP+SFLQFRSNAV+NKI Y LTTLLNELQTF
Subjt:  MFGQPSGQIRHESLKYVYNSRMKEGSSVREHVLDLMVHFNVAEMNGVVIDEQSQVSFILESLPKSFLQFRSNAVINKIEYNLTTLLNELQTF

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGTCGTCCTCAATAATAGCCTTACTTAAAAGCGACCGTTTAACTGGTGAAAATTTTACTACGTGGAAGTCCAACTTGAATACGATTCTCATTGTTGACGACCTTCGGCT
CGTACTAACTAGGGAATGTCCTCAGATTCCTGCTCGTAATGCTCCTCAATCTGTTAAGGAGGCGTACGACCGTTGGATCAAGGCCAATGATAAGGCCAAGGTCTACATTT
TGGCTAGTGTTTCTGAAGTTCTGGCCAAAAAGCACGAGGGCATGGTCTCAGCTCGTGAGATCATGAGTTCACTGCAGGAAATGTTTGGACAACCGTCTGGACAGATTCGG
CATGAATCCCTCAAATACGTTTATAACTCCCGTATGAAGGAGGGGTCATCGGTGAGAGAACACGTTCTTGATCTGATGGTCCACTTCAACGTGGCTGAGATGAATGGAGT
GGTCATTGACGAGCAGAGTCAGGTATCATTCATCCTTGAATCTCTTCCGAAGAGTTTCCTACAATTCCGCAGCAATGCGGTGATAAACAAGATAGAGTATAACCTGACTA
CTCTCCTTAATGAACTACAGACTTTCTAG

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MSSSIIALLKSDRLTGENFTTWKSNLNTILIVDDLRLVLTRECPQIPARNAPQSVKEAYDRWIKANDKAKVYILASVSEVLAKKHEGMVSAREIMSSLQEMFGQPSGQIR
HESLKYVYNSRMKEGSSVREHVLDLMVHFNVAEMNGVVIDEQSQVSFILESLPKSFLQFRSNAVINKIEYNLTTLLNELQTF

Tan0006690 (gene) of Snake gourd v1 genome