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Tan0006772 (gene) of Snake gourd v1 genome

Gene IDTan0006772
OrganismTrichosanthes anguina (Snake gourd v1)
Descriptionprotein RALF-like 19
Genome locationLG06:78930505..78930756
RNA-Seq ExpressionTan0006772
SyntenyTan0006772
Gene Ontology termsGO:0019722 - calcium-mediated signaling (biological process)
GO:0005576 - extracellular region (cellular component)
InterPro domainsIPR008801 - Rapid ALkalinization Factor


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6588676.1 Protein RALF-like 4, partial [Cucurbita argyrosperma subsp. sororia]6.0e-1762.5Show/hide
Query:  AAAVDPHSSAVELAY---KDYHNKYLSYTALRYNNIPCGRRGHSYYDCTKRMRVNPYRRGCSAITGCARFTD
        A   D H    +  +   K+   +YLSY ALR NNIPCGRRG SYYDC KR R+NPYRRGC+AITGCARFTD
Subjt:  AAAVDPHSSAVELAY---KDYHNKYLSYTALRYNNIPCGRRGHSYYDCTKRMRVNPYRRGCSAITGCARFTD

KAG7027448.1 Protein RALF-like 4, partial [Cucurbita argyrosperma subsp. argyrosperma]9.3e-1849.09Show/hide
Query:  MEAMKLGLLLLLIIAAAVDPHSSAV---------------------------ELAYKDYHNKYLSYTALRYNNIPCGRRGHSYYDCTKRMRVNPYRRGCS
        M   KL L LLL++ AA  P+S A                            +   K Y  +YLSY AL +NNIPCGRRG SYYDC KR R+NPYRRGC+
Subjt:  MEAMKLGLLLLLIIAAAVDPHSSAV---------------------------ELAYKDYHNKYLSYTALRYNNIPCGRRGHSYYDCTKRMRVNPYRRGCS

Query:  AITGCARFTD
        AITGCARFTD
Subjt:  AITGCARFTD

XP_016902249.1 PREDICTED: protein RALF-like 4 [Cucumis melo]6.0e-1778.57Show/hide
Query:  AYKDYHNKYLSYTALRYNNIPCGRRGHSYYDCTKRMRVNPYRRGCSAITGCARFTD
        AYK   NKYL Y ALR NN PC RRGHSYYDCTKR + NPYRRGC AITGCARFTD
Subjt:  AYKDYHNKYLSYTALRYNNIPCGRRGHSYYDCTKRMRVNPYRRGCSAITGCARFTD

XP_022925244.1 protein RALF-like 31 [Cucurbita moschata]4.2e-1850Show/hide
Query:  MEAMKLGLLLLLIIAAAVDPHSSAV---------------------------ELAYKDYHNKYLSYTALRYNNIPCGRRGHSYYDCTKRMRVNPYRRGCS
        M  MKL L LLL++ AA  P+S A                            +   K Y  +YLSY AL +NNIPCGRRG SYYDC KR R+NPYRRGC+
Subjt:  MEAMKLGLLLLLIIAAAVDPHSSAV---------------------------ELAYKDYHNKYLSYTALRYNNIPCGRRGHSYYDCTKRMRVNPYRRGCS

Query:  AITGCARFTD
        AITGCARFTD
Subjt:  AITGCARFTD

XP_022927737.1 protein RALF-like 19 [Cucurbita moschata]7.8e-1777.78Show/hide
Query:  KDYHNKYLSYTALRYNNIPCGRRGHSYYDCTKRMRVNPYRRGCSAITGCARFTD
        K+   +YLSY ALR NNIPCGRRG SYYDC KR R+NPYRRGC+AITGCARFTD
Subjt:  KDYHNKYLSYTALRYNNIPCGRRGHSYYDCTKRMRVNPYRRGCSAITGCARFTD

TrEMBL top hitse value%identityAlignment
A0A0A0KCD7 F3H9.8 protein1.1e-1676.79Show/hide
Query:  AYKDYHNKYLSYTALRYNNIPCGRRGHSYYDCTKRMRVNPYRRGCSAITGCARFTD
        AYK   NKYL Y ALR NN PC  RGHSYYDCTKR + NPYRRGC AITGCARFTD
Subjt:  AYKDYHNKYLSYTALRYNNIPCGRRGHSYYDCTKRMRVNPYRRGCSAITGCARFTD

A0A1S4E1Z3 protein RALF-like 42.9e-1778.57Show/hide
Query:  AYKDYHNKYLSYTALRYNNIPCGRRGHSYYDCTKRMRVNPYRRGCSAITGCARFTD
        AYK   NKYL Y ALR NN PC RRGHSYYDCTKR + NPYRRGC AITGCARFTD
Subjt:  AYKDYHNKYLSYTALRYNNIPCGRRGHSYYDCTKRMRVNPYRRGCSAITGCARFTD

A0A5A7SVY5 Protein RALF-like 42.9e-1778.57Show/hide
Query:  AYKDYHNKYLSYTALRYNNIPCGRRGHSYYDCTKRMRVNPYRRGCSAITGCARFTD
        AYK   NKYL Y ALR NN PC RRGHSYYDCTKR + NPYRRGC AITGCARFTD
Subjt:  AYKDYHNKYLSYTALRYNNIPCGRRGHSYYDCTKRMRVNPYRRGCSAITGCARFTD

A0A6J1EBL1 protein RALF-like 312.0e-1850Show/hide
Query:  MEAMKLGLLLLLIIAAAVDPHSSAV---------------------------ELAYKDYHNKYLSYTALRYNNIPCGRRGHSYYDCTKRMRVNPYRRGCS
        M  MKL L LLL++ AA  P+S A                            +   K Y  +YLSY AL +NNIPCGRRG SYYDC KR R+NPYRRGC+
Subjt:  MEAMKLGLLLLLIIAAAVDPHSSAV---------------------------ELAYKDYHNKYLSYTALRYNNIPCGRRGHSYYDCTKRMRVNPYRRGCS

Query:  AITGCARFTD
        AITGCARFTD
Subjt:  AITGCARFTD

A0A6J1EI16 protein RALF-like 193.8e-1777.78Show/hide
Query:  KDYHNKYLSYTALRYNNIPCGRRGHSYYDCTKRMRVNPYRRGCSAITGCARFTD
        K+   +YLSY ALR NNIPCGRRG SYYDC KR R+NPYRRGC+AITGCARFTD
Subjt:  KDYHNKYLSYTALRYNNIPCGRRGHSYYDCTKRMRVNPYRRGCSAITGCARFTD

SwissProt top hitse value%identityAlignment
Q6NME6 Protein RALF-like 194.9e-1472.34Show/hide
Query:  YLSYTALRYNNIPCGRRGHSYYDCTKRMRVNPYRRGCSAITGCARFT
        Y+SY ALR NN+PC RRG SYYDC KR R NPYRRGCS IT C R T
Subjt:  YLSYTALRYNNIPCGRRGHSYYDCTKRMRVNPYRRGCSAITGCARFT

Q8L9P8 Protein RALF-like 333.9e-1163.04Show/hide
Query:  KYLSYTALRYNNIPCGRRGHSYYDCTKRMRVNPYRRGCSAITGCAR
        KY+SY ALR N +PC RRG SYY+C +  + NPY RGCSAIT C R
Subjt:  KYLSYTALRYNNIPCGRRGHSYYDCTKRMRVNPYRRGCSAITGCAR

Q9FZA0 Protein RALF-like 48.4e-1468.09Show/hide
Query:  KYLSYTALRYNNIPCGRRGHSYYDCTKRMRVNPYRRGCSAITGCARF
        +Y+ Y AL+ NN+PC RRG SYYDC KR R NPYRRGCSAIT C R+
Subjt:  KYLSYTALRYNNIPCGRRGHSYYDCTKRMRVNPYRRGCSAITGCARF

Q9LUS7 Rapid alkalinization factor 236.7e-1163.04Show/hide
Query:  KYLSYTALRYNNIPCGRRGHSYYDCTKRMRVNPYRRGCSAITGCAR
        +Y+SY ALR N IPC RRG SYY+C +  + NPY RGCSAIT C R
Subjt:  KYLSYTALRYNNIPCGRRGHSYYDCTKRMRVNPYRRGCSAITGCAR

Q9MA62 Protein RALF-like 221.5e-1058.7Show/hide
Query:  KYLSYTALRYNNIPCGRRGHSYYDCTKRMRVNPYRRGCSAITGCAR
        KY+SY A+R N++PC RRG SYY+C +  + NPY RGCS IT C R
Subjt:  KYLSYTALRYNNIPCGRRGHSYYDCTKRMRVNPYRRGCSAITGCAR

Arabidopsis top hitse value%identityAlignment
AT1G28270.1 ralf-like 46.0e-1568.09Show/hide
Query:  KYLSYTALRYNNIPCGRRGHSYYDCTKRMRVNPYRRGCSAITGCARF
        +Y+ Y AL+ NN+PC RRG SYYDC KR R NPYRRGCSAIT C R+
Subjt:  KYLSYTALRYNNIPCGRRGHSYYDCTKRMRVNPYRRGCSAITGCARF

AT2G33775.1 ralf-like 193.5e-1572.34Show/hide
Query:  YLSYTALRYNNIPCGRRGHSYYDCTKRMRVNPYRRGCSAITGCARFT
        Y+SY ALR NN+PC RRG SYYDC KR R NPYRRGCS IT C R T
Subjt:  YLSYTALRYNNIPCGRRGHSYYDCTKRMRVNPYRRGCSAITGCARFT

AT3G05490.1 ralf-like 221.1e-1158.7Show/hide
Query:  KYLSYTALRYNNIPCGRRGHSYYDCTKRMRVNPYRRGCSAITGCAR
        KY+SY A+R N++PC RRG SYY+C +  + NPY RGCS IT C R
Subjt:  KYLSYTALRYNNIPCGRRGHSYYDCTKRMRVNPYRRGCSAITGCAR

AT3G16570.1 rapid alkalinization factor 234.7e-1263.04Show/hide
Query:  KYLSYTALRYNNIPCGRRGHSYYDCTKRMRVNPYRRGCSAITGCAR
        +Y+SY ALR N IPC RRG SYY+C +  + NPY RGCSAIT C R
Subjt:  KYLSYTALRYNNIPCGRRGHSYYDCTKRMRVNPYRRGCSAITGCAR

AT4G15800.1 ralf-like 332.8e-1263.04Show/hide
Query:  KYLSYTALRYNNIPCGRRGHSYYDCTKRMRVNPYRRGCSAITGCAR
        KY+SY ALR N +PC RRG SYY+C +  + NPY RGCSAIT C R
Subjt:  KYLSYTALRYNNIPCGRRGHSYYDCTKRMRVNPYRRGCSAITGCAR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGCGATGAAGCTCGGTCTACTTCTCCTCCTTATCATCGCTGCCGCCGTCGACCCTCATTCCTCCGCCGTCGAACTTGCCTATAAAGACTATCACAATAAGTATTT
GAGCTACACTGCACTCAGATATAACAACATTCCTTGTGGCCGTCGCGGCCACTCTTATTATGACTGCACTAAGCGTATGAGGGTCAACCCTTACCGTCGTGGCTGCTCTG
CTATCACCGGCTGTGCTCGATTCACCGATTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAAGCGATGAAGCTCGGTCTACTTCTCCTCCTTATCATCGCTGCCGCCGTCGACCCTCATTCCTCCGCCGTCGAACTTGCCTATAAAGACTATCACAATAAGTATTT
GAGCTACACTGCACTCAGATATAACAACATTCCTTGTGGCCGTCGCGGCCACTCTTATTATGACTGCACTAAGCGTATGAGGGTCAACCCTTACCGTCGTGGCTGCTCTG
CTATCACCGGCTGTGCTCGATTCACCGATTAA
Protein sequenceShow/hide protein sequence
MEAMKLGLLLLLIIAAAVDPHSSAVELAYKDYHNKYLSYTALRYNNIPCGRRGHSYYDCTKRMRVNPYRRGCSAITGCARFTD