CuGenDBv2

Gene ID	Tan0006777
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Transcription initiation factor IIA subunit 2
Genome location	LG01:103527213..103529108
RNA-Seq Expression	Tan0006777
Synteny	Tan0006777
Gene Ontology terms	GO:0006413 - translational initiation (biological process) GO:0051123 - RNA polymerase II preinitiation complex assembly (biological process) GO:0005672 - transcription factor TFIIA complex (cellular component) GO:0003743 - translation initiation factor activity (molecular function) GO:0016251 - RNA polymerase II general transcription initiation factor activity (molecular function) GO:0017025 - TBP-class protein binding (molecular function)
InterPro domains	IPR003194 - Transcription initiation factor IIA, gamma subunit IPR009083 - Transcription factor IIA, alpha-helical domain IPR009088 - Transcription factor IIA, beta-barrel IPR015871 - Transcription initiation factor IIA, gamma subunit, C-terminal IPR015872 - Transcription initiation factor IIA, gamma subunit, N-terminal

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6608125.1 Transcription initiation factor IIA subunit 2, partial [Cucurbita argyrosperma subsp. sororia]

4.2e-47

93.4

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Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSTTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNENSQENVERIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKS TEALESQVKSKV+IKGHLHTYRFCDNVWTFILQDATFKNE+SQE V RIKIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSTTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNENSQENVERIKIVACD

Query:  SELLSQ
        S+LL+Q
Subjt:  SELLSQ

XP_004287436.1 PREDICTED: transcription initiation factor IIA subunit 2 [Fragaria vesca subsp. vesca]

2.4e-47

93.4

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Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSTTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNENSQENVERIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKS TEALE+QVKSKVSIKGHLHTYRFCDNVWTFILQDA FKNE+SQENV R+KIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSTTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNENSQENVERIKIVACD

Query:  SELLSQ
        S+LLSQ
Subjt:  SELLSQ

XP_022133819.1 transcription initiation factor IIA subunit 2 [Momordica charantia]

1.7e-48

96.23

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Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSTTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNENSQENVERIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKS TEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNE+SQENV RIKIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSTTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNENSQENVERIKIVACD

Query:  SELLSQ
        S+LLSQ
Subjt:  SELLSQ

XP_022936677.1 transcription initiation factor IIA subunit 2 [Cucurbita moschata]

1.9e-47

94.34

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Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSTTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNENSQENVERIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKS TEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNE+SQE V RIKIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSTTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNENSQENVERIKIVACD

Query:  SELLSQ
        S+LL+Q
Subjt:  SELLSQ

XP_022941425.1 transcription initiation factor IIA subunit 2-like [Cucurbita moschata]

4.2e-47

93.4

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Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSTTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNENSQENVERIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKS TEALESQVKSKV+IKGHLHTYRFCDNVWTFILQDATFKNE+SQE V RIKIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSTTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNENSQENVERIKIVACD

Query:  SELLSQ
        S+LL+Q
Subjt:  SELLSQ

TrEMBL top hits

e value

%identity

Alignment

A0A1S2XSF2 Transcription initiation factor IIA subunit 2

1.2e-47

93.4

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Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSTTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNENSQENVERIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKS TEALE+QVKSKVSIKGHLHTYRFCDNVWTFILQDA FKNE+SQENV R+KIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSTTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNENSQENVERIKIVACD

Query:  SELLSQ
        S+LLSQ
Subjt:  SELLSQ

A0A6J1BWA2 Transcription initiation factor IIA subunit 2

8.2e-49

96.23

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Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSTTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNENSQENVERIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKS TEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNE+SQENV RIKIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSTTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNENSQENVERIKIVACD

Query:  SELLSQ
        S+LLSQ
Subjt:  SELLSQ

A0A6J1F935 Transcription initiation factor IIA subunit 2

9.0e-48

94.34

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Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSTTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNENSQENVERIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKS TEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNE+SQE V RIKIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSTTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNENSQENVERIKIVACD

Query:  SELLSQ
        S+LL+Q
Subjt:  SELLSQ

A0A6J1ILT9 Transcription initiation factor IIA subunit 2

9.0e-48

94.34

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Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSTTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNENSQENVERIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKS TEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNE+SQE V RIKIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSTTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNENSQENVERIKIVACD

Query:  SELLSQ
        S+LL+Q
Subjt:  SELLSQ

A0A6J1J100 Transcription initiation factor IIA subunit 2

2.0e-47

93.4

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Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSTTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNENSQENVERIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKS TEALESQVKSKV+IKGHLHTYRFCDNVWTFILQDATFKNE+SQE V RIKIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSTTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNENSQENVERIKIVACD

Query:  SELLSQ
        S+LL+Q
Subjt:  SELLSQ

SwissProt top hits

e value

%identity

Alignment

A2XZI2 Transcription initiation factor IIA subunit 2

6.2e-46

85.85

Show/hide

Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSTTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNENSQENVERIKIVACD
        MATFELYRRSTIGMCLTETLDEMV +GTLSPELAIQVLVQFDKS TEALE+QVKSKVSIKGHLHTYRFCDNVWTFIL +A+FKNE + E V ++KIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSTTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNENSQENVERIKIVACD

Query:  SELLSQ
        S+LLSQ
Subjt:  SELLSQ

O74948 Transcription initiation factor IIA subunit 2

1.6e-25

53.12

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Query:  FELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSTTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNENSQENVERIKIVAC
        +ELYRRS+IG+ LT+ LD+++  G +SP+LA++VL  FDKS TEAL  +V+S+++ KGHL TYRFCD VWTFI+++ +F+ +N      +I+IVAC
Subjt:  FELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSTTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNENSQENVERIKIVAC

Q0DLD3 Transcription initiation factor IIA subunit 2

6.2e-46

85.85

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Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSTTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNENSQENVERIKIVACD
        MATFELYRRSTIGMCLTETLDEMV +GTLSPELAIQVLVQFDKS TEALE+QVKSKVSIKGHLHTYRFCDNVWTFIL +A+FKNE + E V ++KIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSTTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNENSQENVERIKIVACD

Query:  SELLSQ
        S+LLSQ
Subjt:  SELLSQ

Q39236 Transcription initiation factor IIA subunit 2

5.1e-48

88.68

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Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSTTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNENSQENVERIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQ+GTLSPELAIQVLVQFDKS TEALESQVK+KVSIKGHLHTYRFCDNVWTFILQDA FK+++ QENV R+KIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSTTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNENSQENVERIKIVACD

Query:  SELLSQ
        S+LL+Q
Subjt:  SELLSQ

Q54ND1 Transcription initiation factor IIA subunit 2

6.1e-25

55.45

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Query:  FELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSTTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNE-NSQENVERIKIVACDSE
        +ELYR+STIG  LT+TL+E++ N  +S  L  ++L QFDK+  EAL + VK+K + KG LHTYRFCD+VWTFIL++A FK E N    V+R+KIVACD+ 
Subjt:  FELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSTTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNE-NSQENVERIKIVACDSE

Query:  L
        +
Subjt:  L

Arabidopsis top hits

e value

%identity

Alignment

AT4G24440.1 transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S)

3.6e-49

88.68

Show/hide

Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSTTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNENSQENVERIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQ+GTLSPELAIQVLVQFDKS TEALESQVK+KVSIKGHLHTYRFCDNVWTFILQDA FK+++ QENV R+KIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSTTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNENSQENVERIKIVACD

Query:  SELLSQ
        S+LL+Q
Subjt:  SELLSQ

AT4G24440.2 transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S)

3.6e-49

88.68

Show/hide

Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSTTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNENSQENVERIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQ+GTLSPELAIQVLVQFDKS TEALESQVK+KVSIKGHLHTYRFCDNVWTFILQDA FK+++ QENV R+KIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSTTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNENSQENVERIKIVACD

Query:  SELLSQ
        S+LL+Q
Subjt:  SELLSQ

Sequences

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CDS sequence

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ATGGCAACGTTTGAACTCTACCGCAGATCGACGATCGGAATGTGTTTGACTGAAACTTTGGACGAAATGGTCCAGAATGGTACTCTTAGTCCTGAGCTTGCTATTCAGGT
TCTTGTCCAGTTCGACAAGTCCACGACCGAGGCTCTGGAATCACAGGTGAAAAGCAAGGTGTCTATCAAGGGACATTTGCACACCTATCGATTCTGCGACAACGTTTGGA
CATTCATTTTACAGGATGCAACGTTTAAGAACGAGAATTCTCAAGAGAATGTTGAAAGAATTAAAATAGTAGCATGTGACTCGGAGTTACTCTCACAATAG

mRNA sequence

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AAATTTCTTCGCTCGCAAGAAGCTTTGGAGCTAACGTGAAACCAGTTAGAATCAAGAATCCAGAAGCATCACAAACTCACCAGCAATCTATAGCTACCGTTCATTGCTTA
TCTTGATTTTCGAAGAAGAATGGCAACGTTTGAACTCTACCGCAGATCGACGATCGGAATGTGTTTGACTGAAACTTTGGACGAAATGGTCCAGAATGGTACTCTTAGTC
CTGAGCTTGCTATTCAGGTTCTTGTCCAGTTCGACAAGTCCACGACCGAGGCTCTGGAATCACAGGTGAAAAGCAAGGTGTCTATCAAGGGACATTTGCACACCTATCGA
TTCTGCGACAACGTTTGGACATTCATTTTACAGGATGCAACGTTTAAGAACGAGAATTCTCAAGAGAATGTTGAAAGAATTAAAATAGTAGCATGTGACTCGGAGTTACT
CTCACAATAGGCTTTTTCAAACATCAGTTTATTAGATGAAATTTGCATAATTATTTGCTGATGATCGAGGGAAATAGTCACGCTTAGGAAATGTGCCATCAAGGTATCGT
CACAAGTTGCAAGTTTGGAAAAGATTCAAACGTGGTTCTGTGAAGTCATCCACCTGAACATCAGAAATTTAATTTCACATTGACATTACATTTGACTGTAATTGGCTTCC
TCAGCAAATGTACAGCTGATTTCATAACAATTATACAACCCTTATAGTTTAATGATGATAAAACATGAGATATCTGTTTTAATACTATTCTTTTAATCTTAATTTGTATT
AGTTTCTTTGAAACTCAAAACGTATTACAAAGTAC

Protein sequence

Show/hide protein sequence

MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSTTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNENSQENVERIKIVACDSELLSQ

Tan0006777 (gene) of Snake gourd v1 genome