; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0006862 (gene) of Snake gourd v1 genome

Gene IDTan0006862
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionSWIM-type domain-containing protein
Genome locationLG10:16318028..16319130
RNA-Seq ExpressionTan0006862
SyntenyTan0006862
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAB1203081.1 hypothetical protein CJ030_MR8G005531 [Morella rubra]3.4e-2633.59Show/hide
Query:  MYANFQKK-FKGIALKDCFWSAATTSTEHAFQEAMKDLEKLDVNAHLYVKNIPARFWSRHSFQTYCKSDLLLNNNSESFNSFISEARDKPIIQMLEVIRK
        +YANF+    +G+ALKD  W AAT  TE  F + M +L+ L  +AH Y++ I    WSR  F T+ KSDL++NN  E FNS++ +ARDKPII M+E+IRK
Subjt:  MYANFQKK-FKGIALKDCFWSAATTSTEHAFQEAMKDLEKLDVNAHLYVKNIPARFWSRHSFQTYCKSDLLLNNNSESFNSFISEARDKPIIQMLEVIRK

Query:  LVMSRITRKFGYYSKQEGNLGYRIKGKLEEIKKTSGNVRSTWA--------------------------------------------------DPLQPPV
         +M R   K        G L  R   KLE I + + +   T+A                                                  + ++PP 
Subjt:  LVMSRITRKFGYYSKQEGNLGYRIKGKLEEIKKTSGNVRSTWA--------------------------------------------------DPLQPPV

Query:  LRQPPGRPKRQRKRDVAEARPNQSVRRQTPTVRCSKCKNVGHNSRSCKGKVGRQRQKRK
         R  PGRPK+ RKR   E  P   + R+   + CS+CK +GHN R+C  ++ R++  R+
Subjt:  LRQPPGRPKRQRKRDVAEARPNQSVRRQTPTVRCSKCKNVGHNSRSCKGKVGRQRQKRK

KAF7140119.1 hypothetical protein RHSIM_Rhsim06G0115000 [Rhododendron simsii]8.8e-2731.23Show/hide
Query:  MYANFQKKFKGIALKDCFWSAATTSTEHAFQEAMKDLEKLDVNAHLYVKNIPARFWSRHSFQTYCKSDLLLNNNSESFNSFISEARDKPIIQMLEVIRKL
        +Y N +KK  G+ +K+ FW AA  S + AF+ AM +L+K D NAH +V+ +P + WSRH+F    K+D LLNN  E FN    EAR+KPII M+E IR  
Subjt:  MYANFQKKFKGIALKDCFWSAATTSTEHAFQEAMKDLEKLDVNAHLYVKNIPARFWSRHSFQTYCKSDLLLNNNSESFNSFISEARDKPIIQMLEVIRKL

Query:  VMSRITRKFGYYSKQE--------------------------GNLGYRIKG------------------------------------------------K
        +M R  +  G   K E                          G+L + +K                                                 K
Subjt:  VMSRITRKFGYYSKQE--------------------------GNLGYRIKG------------------------------------------------K

Query:  LEEIKKTSG------NVRSTWAD----PLQPPVLRQPPGRPKRQRKRDVAEARPNQSVRRQTPTVRCSKCKNVGHNSRSCKGKVG
        +E  K+         N ++ W +    P+ PP LR+P GRP++QR+++  E +    +RR   TV C KC   GHN R+CKG VG
Subjt:  LEEIKKTSG------NVRSTWAD----PLQPPVLRQPPGRPKRQRKRDVAEARPNQSVRRQTPTVRCSKCKNVGHNSRSCKGKVG

KAF7143453.1 hypothetical protein RHSIM_Rhsim05G0009400 [Rhododendron simsii]8.8e-2731.58Show/hide
Query:  MYANFQKKFKGIALKDCFWSAATTSTEHAFQEAMKDLEKLDVNAHLYVKNIPARFWSRHSFQTYCKSDLLLNNNSESFNSFISEARDKPIIQMLEVIRKL
        +Y N +KK  G+ +K+ FW AA  S + AF+ AM +L+K D NAH +V+ +PA+ WSRH+F    K+D LLNN  E FN  I E R+KPII M+E IR  
Subjt:  MYANFQKKFKGIALKDCFWSAATTSTEHAFQEAMKDLEKLDVNAHLYVKNIPARFWSRHSFQTYCKSDLLLNNNSESFNSFISEARDKPIIQMLEVIRKL

Query:  VMSRITRKFGYYSKQE--------------------------GNLGYRIK-GK-----------------------------------------------
        +M R  +  G   K +                          G+L + +K GK                                               
Subjt:  VMSRITRKFGYYSKQE--------------------------GNLGYRIK-GK-----------------------------------------------

Query:  LEEIKKTSG------NVRSTWAD----PLQPPVLRQPPGRPKRQRKRDVAEARPNQSVRRQTPTVRCSKCKNVGHNSRSCKGKVG
        +E  K+         N ++ W +    P+ PP LR+P GRP++QR+++  E +    +RR   TV C KC   GHN R+CKG VG
Subjt:  LEEIKKTSG------NVRSTWAD----PLQPPVLRQPPGRPKRQRKRDVAEARPNQSVRRQTPTVRCSKCKNVGHNSRSCKGKVG

KAF7800784.1 Glycoside hydrolase, family 47 [Senna tora]2.5e-2934.19Show/hide
Query:  MYANFQKKFKGIALKDCFWSAATTSTEHAFQEAMKDLEKLDVNAHLYVKNIPARFWSRHSFQTYCKSDLLLNNNSESFNSFISEARDKPIIQMLEVIRKL
        +YANF+ K+KG +L+D  W+A   +T H F   M+ L++LD +AH ++   PA  WSRH+F    K D++ NN +E+FNSFI EARDKPII M E+IR+L
Subjt:  MYANFQKKFKGIALKDCFWSAATTSTEHAFQEAMKDLEKLDVNAHLYVKNIPARFWSRHSFQTYCKSDLLLNNNSESFNSFISEARDKPIIQMLEVIRKL

Query:  VMSRITRKFGYYSKQEGNLGYRIKGKLEEIKKTSGN------------VRSTW-------------------------------------ADPLQPPVLR
        +M R   K        G +   I+ KLE+ K  S N            V + W                                      +    PV R
Subjt:  VMSRITRKFGYYSKQEGNLGYRIKGKLEEIKKTSGN------------VRSTW-------------------------------------ADPLQPPVLR

Query:  QPPGRPKRQRKRDVAEARPNQSVRRQTPTVRCSKCKNVGHNSRSCKGKVGRQRQ--KRKRTTFMGFNIPSSQ
          PGRPK+ RKR   E +      R+  T++C  C ++GHN+R CKG V   R+  K+K+        PS+Q
Subjt:  QPPGRPKRQRKRDVAEARPNQSVRRQTPTVRCSKCKNVGHNSRSCKGKVGRQRQ--KRKRTTFMGFNIPSSQ

XP_012440473.1 PREDICTED: uncharacterized protein LOC105765760 [Gossypium raimondii]1.8e-2732.08Show/hide
Query:  MYANFQ--KKFKGIALKDCFWSAATTSTEHAFQEAMKDLEKLDVNAHLYVKNIPARFWSRHSFQTYCKSDLLLNNNSESFNSFISEARDKPIIQMLEVIR
        +Y NF+  + F+G  ++  +W AA  +    F+EAM ++  L      ++++   R WSR  F T CKSDLLLNNN+E FN  I EAR KPI+ MLE+IR
Subjt:  MYANFQ--KKFKGIALKDCFWSAATTSTEHAFQEAMKDLEKLDVNAHLYVKNIPARFWSRHSFQTYCKSDLLLNNNSESFNSFISEARDKPIIQMLEVIR

Query:  KLVMSRITRKFGYYSKQEGNLGYRIKGKLEEIKKTSGNVRSTWA----------------------------------------------DPLQPPVLRQ
        + VM+R+        K  G L  RI+ KL EI   S N+   +A                                              +P+ PP++R+
Subjt:  KLVMSRITRKFGYYSKQEGNLGYRIKGKLEEIKKTSGNVRSTWA----------------------------------------------DPLQPPVLRQ

Query:  PPGRPKRQRKRDVAEARPN-QSVRRQTPTVRCSKCKNVGHNSRSCKGKVGRQRQKRKRTTFMGFN
        PPGRPK+ R++++ E R +   + +      C+KC   GHN+R+CKG VG  +   ++++ +  N
Subjt:  PPGRPKRQRKRDVAEARPN-QSVRRQTPTVRCSKCKNVGHNSRSCKGKVGRQRQKRKRTTFMGFN

TrEMBL top hitse value%identityAlignment
A0A2N9FDQ0 SWIM-type domain-containing protein6.6e-2831.72Show/hide
Query:  MYANFQKKFKGIALKDCFWSAATTSTEHAFQEAMKDLEKLDVNAHLYVKNIPARFWSRHSFQTYCKSDLLLNNNSESFNSFISEARDKPIIQMLEVIRKL
        +YANF K +KG  LKD  W AA   TE  F E MK+++ L+ NAH ++K + A  WS+H+     K D+LLNN +E+FNS+I EARDKPII MLE+IR+ 
Subjt:  MYANFQKKFKGIALKDCFWSAATTSTEHAFQEAMKDLEKLDVNAHLYVKNIPARFWSRHSFQTYCKSDLLLNNNSESFNSFISEARDKPIIQMLEVIRKL

Query:  VMSRITRKFGYYSKQEGNLGYRIKGKLEEIKKTS-------GNVR-------------------------------------------------------
        +M R   K     + E N+  RIK KLE+ K  +       G V+                                                       
Subjt:  VMSRITRKFGYYSKQEGNLGYRIKGKLEEIKKTS-------GNVR-------------------------------------------------------

Query:  -----------------------STWADPLQPPVLRQPPGRPKRQRKRDVAEARPNQSVRRQTPTVRCSKCKNVGHNSRSCKGKVGRQRQ
                               +T  DP+ PPV+R   GRPK+ R+++  E      V R+   V+C KC   GHN+R+CK     +R+
Subjt:  -----------------------STWADPLQPPVLRQPPGRPKRQRKRDVAEARPNQSVRRQTPTVRCSKCKNVGHNSRSCKGKVGRQRQ

A0A2N9FFQ0 CCHC-type domain-containing protein1.7e-2834.23Show/hide
Query:  MYANFQKKFKGIALKDCFWSAATTSTEHAFQEAMKDLEKLDVNAHLYVKNIPARFWSRHSFQTYCKSDLLLNNNSESFNSFISEARDKPIIQMLEVIRKL
        MY NF+KKF GI LKD FW  A+ + E  ++ AMK+L+++D  A  +V++ P   W +H F+ + K D L+NN  ESFN  I +AR KPII ++E IR  
Subjt:  MYANFQKKFKGIALKDCFWSAATTSTEHAFQEAMKDLEKLDVNAHLYVKNIPARFWSRHSFQTYCKSDLLLNNNSESFNSFISEARDKPIIQMLEVIRKL

Query:  VMSRITRKFGYYSKQEGNLGYRIKGKLEEIKKTSGNVRS----------------------------------------------------------TWA
        +M R         K EG+L   I+ KL   K  SGN  S                                                          T  
Subjt:  VMSRITRKFGYYSKQEGNLGYRIKGKLEEIKKTSGNVRS----------------------------------------------------------TWA

Query:  DPLQPPVLRQPPGRPKRQRKRDVAEARPNQS-VRRQTPTVRCSKCKNVGHNSRSCKGKVG
         P++PP +R+PPGRPK+ R+R+  E RP  + + ++   ++C KC   GHN R+CKGKVG
Subjt:  DPLQPPVLRQPPGRPKRQRKRDVAEARPNQS-VRRQTPTVRCSKCKNVGHNSRSCKGKVG

A0A2N9GGB0 CCHC-type domain-containing protein3.3e-2735.68Show/hide
Query:  MYANFQKKFKGIALKDCFWSAATTSTEHAFQEAMKDLEKLDVNAHLYVKNIPARFWSRHSFQTYCKSDLLLNNNSESFNSFISEARDKPIIQMLEVIRKL
        +Y N +++  GI +K+ FW AA  +    F++ M +L+++DV AH +++ +P + W+R  F    KSD LLNN  E FNS I EAR KPII ++E IR  
Subjt:  MYANFQKKFKGIALKDCFWSAATTSTEHAFQEAMKDLEKLDVNAHLYVKNIPARFWSRHSFQTYCKSDLLLNNNSESFNSFISEARDKPIIQMLEVIRKL

Query:  VMSRITRKFGYYSKQEGNLGYRIKGKLEEIKKTSGNVRSTWADPLQPPVL------------RQPPGRPKRQRKRDVAEARPNQSVRRQTPTVRCSKCKN
        +M R         K +  L  +I+ K+ ++K+ S      W + L   V             ++PPGRPK+ R R+  E +    + R     +C KC  
Subjt:  VMSRITRKFGYYSKQEGNLGYRIKGKLEEIKKTSGNVRSTWADPLQPPVL------------RQPPGRPKRQRKRDVAEARPNQSVRRQTPTVRCSKCKN

Query:  VGHNSRSCKGKVG
        +GHN RSCKG+VG
Subjt:  VGHNSRSCKGKVG

A0A2N9GX21 SWIM-type domain-containing protein6.6e-2831.72Show/hide
Query:  MYANFQKKFKGIALKDCFWSAATTSTEHAFQEAMKDLEKLDVNAHLYVKNIPARFWSRHSFQTYCKSDLLLNNNSESFNSFISEARDKPIIQMLEVIRKL
        +YANF K +KG  LKD  W AA   TE  F E MK+++ L+ NAH ++K + A  WS+H+     K D+LLNN +E+FNS+I EARDKPII MLE+IR+ 
Subjt:  MYANFQKKFKGIALKDCFWSAATTSTEHAFQEAMKDLEKLDVNAHLYVKNIPARFWSRHSFQTYCKSDLLLNNNSESFNSFISEARDKPIIQMLEVIRKL

Query:  VMSRITRKFGYYSKQEGNLGYRIKGKLEEIKKTS-------GNVR-------------------------------------------------------
        +M R   K     + E N+  RIK KLE+ K  +       G V+                                                       
Subjt:  VMSRITRKFGYYSKQEGNLGYRIKGKLEEIKKTS-------GNVR-------------------------------------------------------

Query:  -----------------------STWADPLQPPVLRQPPGRPKRQRKRDVAEARPNQSVRRQTPTVRCSKCKNVGHNSRSCKGKVGRQRQ
                               +T  DP+ PPV+R   GRPK+ R+++  E      V R+   V+C KC   GHN+R+CK     +R+
Subjt:  -----------------------STWADPLQPPVLRQPPGRPKRQRKRDVAEARPNQSVRRQTPTVRCSKCKNVGHNSRSCKGKVGRQRQ

A0A2N9HNE0 CCHC-type domain-containing protein7.3e-2736.49Show/hide
Query:  MYANFQKKFKGIALKDCFWSAATTSTEHAFQEAMKDLEKLDVNAHLYVKNIPARFWSRHSFQTYCKSDLLLNNNSESFNSFISEARDKPIIQMLEVIRKL
        +Y N +++  GI +K+ FW AA  +    F++ M +L+++DV AH +++ +P + W+R  F    KSD LLNN  E FNS I EAR KPII ++E IR  
Subjt:  MYANFQKKFKGIALKDCFWSAATTSTEHAFQEAMKDLEKLDVNAHLYVKNIPARFWSRHSFQTYCKSDLLLNNNSESFNSFISEARDKPIIQMLEVIRKL

Query:  VMSRITRKFGYYSKQEGNLGYRIKGKLEEIKKTSG------NVRSTWA----DPLQPPVLRQPPGRPKRQRKRDVAEARPNQSVRRQTPTVRCSKCKNVG
        +M        +Y+K++ +       K+   K          N  + WA     P++PP LR+PPGRPK+   R+  E++    + R     +C KC  +G
Subjt:  VMSRITRKFGYYSKQEGNLGYRIKGKLEEIKKTSG------NVRSTWA----DPLQPPVLRQPPGRPKRQRKRDVAEARPNQSVRRQTPTVRCSKCKNVG

Query:  HNSRSCKGKVG
        HN RSCKG+VG
Subjt:  HNSRSCKGKVG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTATGCTAATTTTCAGAAAAAATTCAAGGGTATAGCATTGAAGGACTGTTTTTGGAGCGCTGCGACGACATCAACAGAACATGCTTTCCAAGAAGCTATGAAAGATTT
AGAGAAACTTGATGTCAATGCTCATCTGTATGTAAAGAACATACCAGCAAGGTTTTGGTCGAGGCATAGTTTCCAAACATATTGTAAGTCTGACCTCTTGTTAAACAATA
ACTCTGAGTCATTTAATTCCTTCATCAGTGAAGCACGAGACAAACCTATAATACAAATGTTAGAGGTAATTCGTAAGCTTGTCATGTCTAGAATTACAAGAAAGTTTGGG
TACTACAGTAAACAAGAAGGAAATTTAGGATACAGAATCAAAGGAAAGCTAGAAGAGATTAAGAAAACATCTGGAAATGTGAGATCGACGTGGGCGGACCCACTTCAACC
ACCTGTATTAAGACAACCTCCAGGACGACCAAAAAGACAACGTAAGAGAGATGTCGCTGAAGCTAGACCGAACCAATCCGTGCGACGACAAACACCTACTGTAAGATGCA
GCAAGTGCAAGAACGTTGGGCATAATTCACGATCATGTAAGGGTAAAGTCGGGAGGCAAAGACAAAAGAGGAAGAGAACAACATTTATGGGTTTCAATATCCCATCTTCG
CAGCAAGATGATGACATGGATGTGCAAATCATTTCGTCCCAACGTGGTAATCCATCTTCTAGTGGATCTAAAAGGATGTATAGAACTCGATCAAAGATGCAGACTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTATGCTAATTTTCAGAAAAAATTCAAGGGTATAGCATTGAAGGACTGTTTTTGGAGCGCTGCGACGACATCAACAGAACATGCTTTCCAAGAAGCTATGAAAGATTT
AGAGAAACTTGATGTCAATGCTCATCTGTATGTAAAGAACATACCAGCAAGGTTTTGGTCGAGGCATAGTTTCCAAACATATTGTAAGTCTGACCTCTTGTTAAACAATA
ACTCTGAGTCATTTAATTCCTTCATCAGTGAAGCACGAGACAAACCTATAATACAAATGTTAGAGGTAATTCGTAAGCTTGTCATGTCTAGAATTACAAGAAAGTTTGGG
TACTACAGTAAACAAGAAGGAAATTTAGGATACAGAATCAAAGGAAAGCTAGAAGAGATTAAGAAAACATCTGGAAATGTGAGATCGACGTGGGCGGACCCACTTCAACC
ACCTGTATTAAGACAACCTCCAGGACGACCAAAAAGACAACGTAAGAGAGATGTCGCTGAAGCTAGACCGAACCAATCCGTGCGACGACAAACACCTACTGTAAGATGCA
GCAAGTGCAAGAACGTTGGGCATAATTCACGATCATGTAAGGGTAAAGTCGGGAGGCAAAGACAAAAGAGGAAGAGAACAACATTTATGGGTTTCAATATCCCATCTTCG
CAGCAAGATGATGACATGGATGTGCAAATCATTTCGTCCCAACGTGGTAATCCATCTTCTAGTGGATCTAAAAGGATGTATAGAACTCGATCAAAGATGCAGACTTGA
Protein sequenceShow/hide protein sequence
MYANFQKKFKGIALKDCFWSAATTSTEHAFQEAMKDLEKLDVNAHLYVKNIPARFWSRHSFQTYCKSDLLLNNNSESFNSFISEARDKPIIQMLEVIRKLVMSRITRKFG
YYSKQEGNLGYRIKGKLEEIKKTSGNVRSTWADPLQPPVLRQPPGRPKRQRKRDVAEARPNQSVRRQTPTVRCSKCKNVGHNSRSCKGKVGRQRQKRKRTTFMGFNIPSS
QQDDDMDVQIISSQRGNPSSSGSKRMYRTRSKMQT