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Tan0006888 (gene) of Snake gourd v1 genome

Gene IDTan0006888
OrganismTrichosanthes anguina (Snake gourd v1)
Descriptionprotein RADIALIS-like 1
Genome locationLG02:7938487..7939687
RNA-Seq ExpressionTan0006888
SyntenyTan0006888
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR017884 - SANT domain
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008447026.1 PREDICTED: protein RADIALIS-like 1 [Cucumis melo]5.7e-2575.95Show/hide
Query:  MASMSAHGSSSWTAMENKAFEKALAVFDQDTPERWLNVAKAIGSGKSEEEVKRHYELLVKDVKCIELGEITCPYRSSTR
        MASMSAHGS+ WTA+ENKAFEKALA++D+DTPERWLNVAKAIG GK+EE+VKRHY+LL++DV  IE G+I  PYR+STR
Subjt:  MASMSAHGSSSWTAMENKAFEKALAVFDQDTPERWLNVAKAIGSGKSEEEVKRHYELLVKDVKCIELGEITCPYRSSTR

XP_022136064.1 protein RADIALIS-like 1 [Momordica charantia]5.7e-2577.92Show/hide
Query:  MASMSAHGSSSWTAMENKAFEKALAVFDQDTPERWLNVAKAIGSGKSEEEVKRHYELLVKDVKCIELGEITCPYRSS
        MASMS+HGSS+WTA +NKAFEKALAV+DQDTPERWLNVAKA+G GK+ EEVKRHYELLV+DVK IE G+++ PYR+S
Subjt:  MASMSAHGSSSWTAMENKAFEKALAVFDQDTPERWLNVAKAIGSGKSEEEVKRHYELLVKDVKCIELGEITCPYRSS

XP_022136067.1 protein RADIALIS-like 1 [Momordica charantia]1.7e-2478.67Show/hide
Query:  MASMSAHGSSSWTAMENKAFEKALAVFDQDTPERWLNVAKAIGSGKSEEEVKRHYELLVKDVKCIELGEITCPYR
        MASMSAHGS SWTAM+NKAFE+ALAV+D+DTP+RWLNVAKAIG  K+EEEVKRHY+LLV+DVK IE GE++ PYR
Subjt:  MASMSAHGSSSWTAMENKAFEKALAVFDQDTPERWLNVAKAIGSGKSEEEVKRHYELLVKDVKCIELGEITCPYR

XP_022952660.1 protein RADIALIS-like 1 [Cucurbita moschata]4.2e-2886.08Show/hide
Query:  MASMSAHGSSSWTAMENKAFEKALAVFDQDTPERWLNVAKAIGSGKSEEEVKRHYELLVKDVKCIELGEITCPYRSSTR
        MASMSAHGSS+WTA ENKAFEKALAVFDQDTPERW+NVAKAIG GK+E+EVKRHY+LLVKDVK IE GEI  PYRSSTR
Subjt:  MASMSAHGSSSWTAMENKAFEKALAVFDQDTPERWLNVAKAIGSGKSEEEVKRHYELLVKDVKCIELGEITCPYRSSTR

XP_022972544.1 protein RADIALIS-like 1 [Cucurbita maxima]3.6e-2783.54Show/hide
Query:  MASMSAHGSSSWTAMENKAFEKALAVFDQDTPERWLNVAKAIGSGKSEEEVKRHYELLVKDVKCIELGEITCPYRSSTR
        MASMSAHGSS+WTA ENKAFEKALAVFDQDTP+RW+NVAKAIG GK+E+EVKRHY+LLV DVK IE GEI  PYRSSTR
Subjt:  MASMSAHGSSSWTAMENKAFEKALAVFDQDTPERWLNVAKAIGSGKSEEEVKRHYELLVKDVKCIELGEITCPYRSSTR

TrEMBL top hitse value%identityAlignment
A0A0A0K3K0 SANT domain-containing protein4.3e-2678.48Show/hide
Query:  MASMSAHGSSSWTAMENKAFEKALAVFDQDTPERWLNVAKAIGSGKSEEEVKRHYELLVKDVKCIELGEITCPYRSSTR
        MASMSAHGSS+WTA+ENKAFEKALA++D+DTPERWLNVAKAIG GK+EEEVKRHY+LL++DV  IE G+I  PYR STR
Subjt:  MASMSAHGSSSWTAMENKAFEKALAVFDQDTPERWLNVAKAIGSGKSEEEVKRHYELLVKDVKCIELGEITCPYRSSTR

A0A1S3BGF0 protein RADIALIS-like 12.8e-2575.95Show/hide
Query:  MASMSAHGSSSWTAMENKAFEKALAVFDQDTPERWLNVAKAIGSGKSEEEVKRHYELLVKDVKCIELGEITCPYRSSTR
        MASMSAHGS+ WTA+ENKAFEKALA++D+DTPERWLNVAKAIG GK+EE+VKRHY+LL++DV  IE G+I  PYR+STR
Subjt:  MASMSAHGSSSWTAMENKAFEKALAVFDQDTPERWLNVAKAIGSGKSEEEVKRHYELLVKDVKCIELGEITCPYRSSTR

A0A6J1C385 protein RADIALIS-like 12.8e-2577.92Show/hide
Query:  MASMSAHGSSSWTAMENKAFEKALAVFDQDTPERWLNVAKAIGSGKSEEEVKRHYELLVKDVKCIELGEITCPYRSS
        MASMS+HGSS+WTA +NKAFEKALAV+DQDTPERWLNVAKA+G GK+ EEVKRHYELLV+DVK IE G+++ PYR+S
Subjt:  MASMSAHGSSSWTAMENKAFEKALAVFDQDTPERWLNVAKAIGSGKSEEEVKRHYELLVKDVKCIELGEITCPYRSS

A0A6J1GKV1 protein RADIALIS-like 12.0e-2886.08Show/hide
Query:  MASMSAHGSSSWTAMENKAFEKALAVFDQDTPERWLNVAKAIGSGKSEEEVKRHYELLVKDVKCIELGEITCPYRSSTR
        MASMSAHGSS+WTA ENKAFEKALAVFDQDTPERW+NVAKAIG GK+E+EVKRHY+LLVKDVK IE GEI  PYRSSTR
Subjt:  MASMSAHGSSSWTAMENKAFEKALAVFDQDTPERWLNVAKAIGSGKSEEEVKRHYELLVKDVKCIELGEITCPYRSSTR

A0A6J1I8Y0 protein RADIALIS-like 11.7e-2783.54Show/hide
Query:  MASMSAHGSSSWTAMENKAFEKALAVFDQDTPERWLNVAKAIGSGKSEEEVKRHYELLVKDVKCIELGEITCPYRSSTR
        MASMSAHGSS+WTA ENKAFEKALAVFDQDTP+RW+NVAKAIG GK+E+EVKRHY+LLV DVK IE GEI  PYRSSTR
Subjt:  MASMSAHGSSSWTAMENKAFEKALAVFDQDTPERWLNVAKAIGSGKSEEEVKRHYELLVKDVKCIELGEITCPYRSSTR

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 14.4e-2063.64Show/hide
Query:  ASMSAHGSSSWTAMENKAFEKALAVFDQDTPERWLNVAKAIGSGKSEEEVKRHYELLVKDVKCIELGEITCP-YRSS
        +SMS+  S SWTA +NKAFE+ALA +DQDTP RW NVAK +G GK+ EEVKRHYELLV+D+  IE G +  P YR+S
Subjt:  ASMSAHGSSSWTAMENKAFEKALAVFDQDTPERWLNVAKAIGSGKSEEEVKRHYELLVKDVKCIELGEITCP-YRSS

Q58FS3 Transcription factor RADIALIS7.7e-1756.41Show/hide
Query:  MASMSAHGSSSWTAMENKAFEKALAVFDQDTPERWLNVAKAIGSGKSEEEVKRHYELLVKDVKCIELGEITCP-YRSS
        MAS    G   W+A ENKAFE+ALAV+D+DTP+RW NVA+A+  G++ EEVK+HYE+LV+D+K IE G++  P YR++
Subjt:  MASMSAHGSSSWTAMENKAFEKALAVFDQDTPERWLNVAKAIGSGKSEEEVKRHYELLVKDVKCIELGEITCP-YRSS

Q6NNN0 Protein RADIALIS-like 38.3e-1962.82Show/hide
Query:  MASMSAHGSSSWTAMENKAFEKALAVFDQDTPERWLNVAKAIGSGKSEEEVKRHYELLVKDVKCIELGEITCP-YRSS
        MAS S   S+SWT  ENK FE+ALA +DQDTP+RW NVA+A+G GKS EEV+RHYELL++DV  IE G    P YRS+
Subjt:  MASMSAHGSSSWTAMENKAFEKALAVFDQDTPERWLNVAKAIGSGKSEEEVKRHYELLVKDVKCIELGEITCP-YRSS

Q8GW75 Protein RADIALIS-like 51.6e-1761.64Show/hide
Query:  MASMSAHGSSSWTAMENKAFEKALAVFDQDTPERWLNVAKAIGSGKSEEEVKRHYELLVKDVKCIELGEITCP
        MAS S   SSSWT+ +NK FE+ALAV+D+DTP+RW NVAKA+GS KS EEVKRHY++LV+D+  IE   +  P
Subjt:  MASMSAHGSSSWTAMENKAFEKALAVFDQDTPERWLNVAKAIGSGKSEEEVKRHYELLVKDVKCIELGEITCP

Q9SIJ5 Protein RADIALIS-like 21.3e-1959.74Show/hide
Query:  SMSAHGSSSWTAMENKAFEKALAVFDQDTPERWLNVAKAIGSGKSEEEVKRHYELLVKDVKCIELGEITCP-YRSST
        SMS++GS SWT  +NKAFE+ALAV+DQDTP+RW NVA+A+G GK+ EE KR Y+LLV+D++ IE G +  P Y+++T
Subjt:  SMSAHGSSSWTAMENKAFEKALAVFDQDTPERWLNVAKAIGSGKSEEEVKRHYELLVKDVKCIELGEITCP-YRSST

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 51.1e-1861.64Show/hide
Query:  MASMSAHGSSSWTAMENKAFEKALAVFDQDTPERWLNVAKAIGSGKSEEEVKRHYELLVKDVKCIELGEITCP
        MAS S   SSSWT+ +NK FE+ALAV+D+DTP+RW NVAKA+GS KS EEVKRHY++LV+D+  IE   +  P
Subjt:  MASMSAHGSSSWTAMENKAFEKALAVFDQDTPERWLNVAKAIGSGKSEEEVKRHYELLVKDVKCIELGEITCP

AT1G75250.1 RAD-like 61.2e-1758.9Show/hide
Query:  MASMSAHGSSSWTAMENKAFEKALAVFDQDTPERWLNVAKAIGSGKSEEEVKRHYELLVKDVKCIELGEITCP
        MAS S    S WT  +NK FE+ALAV+D+DTP+RW NVAKA+G GK+ EEVKRHY++LV+D+  IE G +  P
Subjt:  MASMSAHGSSSWTAMENKAFEKALAVFDQDTPERWLNVAKAIGSGKSEEEVKRHYELLVKDVKCIELGEITCP

AT1G75250.2 RAD-like 61.2e-1758.9Show/hide
Query:  MASMSAHGSSSWTAMENKAFEKALAVFDQDTPERWLNVAKAIGSGKSEEEVKRHYELLVKDVKCIELGEITCP
        MAS S    S WT  +NK FE+ALAV+D+DTP+RW NVAKA+G GK+ EEVKRHY++LV+D+  IE G +  P
Subjt:  MASMSAHGSSSWTAMENKAFEKALAVFDQDTPERWLNVAKAIGSGKSEEEVKRHYELLVKDVKCIELGEITCP

AT2G21650.1 Homeodomain-like superfamily protein9.1e-2159.74Show/hide
Query:  SMSAHGSSSWTAMENKAFEKALAVFDQDTPERWLNVAKAIGSGKSEEEVKRHYELLVKDVKCIELGEITCP-YRSST
        SMS++GS SWT  +NKAFE+ALAV+DQDTP+RW NVA+A+G GK+ EE KR Y+LLV+D++ IE G +  P Y+++T
Subjt:  SMSAHGSSSWTAMENKAFEKALAVFDQDTPERWLNVAKAIGSGKSEEEVKRHYELLVKDVKCIELGEITCP-YRSST

AT4G39250.1 RAD-like 13.1e-2163.64Show/hide
Query:  ASMSAHGSSSWTAMENKAFEKALAVFDQDTPERWLNVAKAIGSGKSEEEVKRHYELLVKDVKCIELGEITCP-YRSS
        +SMS+  S SWTA +NKAFE+ALA +DQDTP RW NVAK +G GK+ EEVKRHYELLV+D+  IE G +  P YR+S
Subjt:  ASMSAHGSSSWTAMENKAFEKALAVFDQDTPERWLNVAKAIGSGKSEEEVKRHYELLVKDVKCIELGEITCP-YRSS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCAATGTCAGCTCATGGGTCTAGTTCATGGACTGCAATGGAAAACAAAGCATTTGAGAAAGCTCTGGCAGTGTTTGACCAAGACACACCCGAGCGATGGTTGAA
TGTTGCAAAGGCCATTGGATCAGGAAAATCGGAAGAAGAAGTAAAGAGGCATTATGAACTTCTTGTGAAAGATGTTAAGTGTATTGAGCTTGGTGAAATTACTTGCCCCT
ATCGAAGCTCTACGAGATAG
mRNA sequenceShow/hide mRNA sequence
CCATCTCCAATTGTTGTTTGTTTTTTTTGTTCTTTCTATATCTTGTGGTTTCTAAGGTCACAAATCATCAAAATCCTCTTGGCTTCCTTATAAATAGCAACCACTCCTTG
CTCTTTGCCACATATCATCATTTTCCTTGTAAACTTTAATTAAGTTCCTCTTTCACTTCAAACCCATTTTAACCAATGGCTTCAATGTCAGCTCATGGGTCTAGTTCATG
GACTGCAATGGAAAACAAAGCATTTGAGAAAGCTCTGGCAGTGTTTGACCAAGACACACCCGAGCGATGGTTGAATGTTGCAAAGGCCATTGGATCAGGAAAATCGGAAG
AAGAAGTAAAGAGGCATTATGAACTTCTTGTGAAAGATGTTAAGTGTATTGAGCTTGGTGAAATTACTTGCCCCTATCGAAGCTCTACGAGATAGTGTTATTGGCTTTTG
ATAGAAAGAGCTAAAGCTGCACATTGAGCATTGAACAGAGGGTATGGTAAACTCGGGTAGGTGAGCATTGAACAACACAACTACAAATGACAGTATAGTGCAAATAGAGG
AGAGTGCATCTATCATATAATGGAACAAACAATAAAATGTTGAAGCCACAATTAGGAAAAAAAAATAGAAGCTATGGTTTGGAAAAAATAAAAGCGGAAAAAAAATAGGA
CCCAAGAACAGTAGAACAGAAATAAGATTTGTGTGTACTCAATATGAGACTGAAAGTTGT
Protein sequenceShow/hide protein sequence
MASMSAHGSSSWTAMENKAFEKALAVFDQDTPERWLNVAKAIGSGKSEEEVKRHYELLVKDVKCIELGEITCPYRSSTR