CuGenDBv2

Gene ID	Tan0006950
Organism	Trichosanthes anguina (Snake gourd v1)
Description	30S ribosomal protein S18, chloroplastic
Genome location	Contig00034:92215..92520
RNA-Seq Expression	Tan0006950
Synteny	Tan0006950
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005840 - ribosome (cellular component) GO:0009507 - chloroplast (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0019843 - rRNA binding (molecular function)
InterPro domains	IPR001648 - Ribosomal protein S18 IPR018275 - Ribosomal protein S18, conserved site IPR036870 - Ribosomal protein S18 superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

QJR52978.1 ribosomal protein S18 [Herpetospermum pedunculosum]

1.3e-42

97.03

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Query:  MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERSESTTRTIGLRTRN
        MDKSKRLLLKSKRSFR+RLPPIQSGDRIDYRNMSLISRFISEQGKILSRR+NRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERSEST RTIGLRTRN
Subjt:  MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERSESTTRTIGLRTRN

Query:  K
        K
Subjt:  K

YP_009317408.1 ribosomal protein S18 [Coccinia grandis]

4.5e-43

99.01

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Query:  MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERSESTTRTIGLRTRN
        MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERSEST RTIGLRTRN
Subjt:  MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERSESTTRTIGLRTRN

Query:  K
        K
Subjt:  K

YP_009456168.1 ribosomal protein S18 [Lagenaria siceraria]

1.0e-42

98.02

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Query:  MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERSESTTRTIGLRTRN
        MDKSKRLLLKSKRSFR+RLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERSEST RTIGLRTRN
Subjt:  MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERSESTTRTIGLRTRN

Query:  K
        K
Subjt:  K

YP_009751507.1 ribosomal protein S18 [Thladiantha dubia]

1.3e-42

98.02

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Query:  MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERSESTTRTIGLRTRN
        MDKSKRLLLKSKRSFR+RLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFE SESTTRTIGLRTRN
Subjt:  MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERSESTTRTIGLRTRN

Query:  K
        K
Subjt:  K

YP_009753896.1 ribosomal protein S18 [Trichosanthes lobata]

1.2e-43

100

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Query:  MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERSESTTRTIGLRTRN
        MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERSESTTRTIGLRTRN
Subjt:  MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERSESTTRTIGLRTRN

Query:  K
        K
Subjt:  K

TrEMBL top hits

e value

%identity

Alignment

A0A2Z2CGJ8 30S ribosomal protein S18, chloroplastic

2.2e-43

99.01

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Query:  MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERSESTTRTIGLRTRN
        MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERSEST RTIGLRTRN
Subjt:  MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERSESTTRTIGLRTRN

Query:  K
        K
Subjt:  K

A0A346QNH8 30S ribosomal protein S18, chloroplastic

2.2e-43

99.01

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Query:  MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERSESTTRTIGLRTRN
        MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERSEST RTIGLRTRN
Subjt:  MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERSESTTRTIGLRTRN

Query:  K
        K
Subjt:  K

A0A410HFA4 30S ribosomal protein S18, chloroplastic

2.2e-43

99.01

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Query:  MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERSESTTRTIGLRTRN
        MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERSEST RTIGLRTRN
Subjt:  MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERSESTTRTIGLRTRN

Query:  K
        K
Subjt:  K

A0A6H0EVZ7 30S ribosomal protein S18, chloroplastic

5.8e-44

100

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Query:  MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERSESTTRTIGLRTRN
        MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERSESTTRTIGLRTRN
Subjt:  MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERSESTTRTIGLRTRN

Query:  K
        K
Subjt:  K

A0A6M3RTS7 30S ribosomal protein S18, chloroplastic

2.2e-43

99.01

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Query:  MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERSESTTRTIGLRTRN
        MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERSEST RTIGLRTRN
Subjt:  MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERSESTTRTIGLRTRN

Query:  K
        K
Subjt:  K

SwissProt top hits

e value

%identity

Alignment

A0ZZ57 30S ribosomal protein S18, chloroplastic

1.9e-44

96.04

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Query:  MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERSESTTRTIGLRTRN
        MDKSKRL LKSKRSFR+RLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERSESTTRT  LRTRN
Subjt:  MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERSESTTRTIGLRTRN

Query:  K
        K
Subjt:  K

B1A957 30S ribosomal protein S18, chloroplastic

1.6e-43

94.06

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Query:  MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERSESTTRTIGLRTRN
        MDKSKRL  KSKRSFR+RLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILS LPFLNNEKQFERSESTT+T GLRTRN
Subjt:  MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERSESTTRTIGLRTRN

Query:  K
        K
Subjt:  K

Q09WZ5 30S ribosomal protein S18, chloroplastic

8.0e-43

93.07

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Query:  MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERSESTTRTIGLRTRN
        MDKSKRL LKSKRSFR+RLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARIL LLPFLNNEKQFERSEST RT GLR +N
Subjt:  MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERSESTTRTIGLRTRN

Query:  K
        K
Subjt:  K

Q0G9U0 30S ribosomal protein S18, chloroplastic

2.1e-43

94.06

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Query:  MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERSESTTRTIGLRTRN
        MDKSKR  LKSKRSFR+RLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFER+ESTTRT GLR RN
Subjt:  MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERSESTTRTIGLRTRN

Query:  K
        K
Subjt:  K

Q2L928 30S ribosomal protein S18, chloroplastic

9.5e-44

95.05

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Query:  MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERSESTTRTIGLRTRN
        MDKSKRL LKSKRSFR+RLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILS LPFLNNEKQFERSESTTRT  LRTRN
Subjt:  MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERSESTTRTIGLRTRN

Query:  K
        K
Subjt:  K

Arabidopsis top hits

e value

%identity

Alignment

ATCG00650.1 ribosomal protein S18

2.4e-42

90.1

Show/hide

Query:  MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERSESTTRTIGLRTRN
        M+KSKRL  KSKRSFR+RLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNR+TLKQQRLITIAIKQARILSLLPFLNN+KQFERSEST RT  LRTR 
Subjt:  MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERSESTTRTIGLRTRN

Query:  K
        K
Subjt:  K

Sequences

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CDS sequence

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ATGGATAAATCCAAGCGACTCCTTCTTAAATCCAAACGATCTTTTCGTAAGCGTTTGCCCCCGATTCAATCGGGGGATCGAATTGATTATAGAAACATGAGTTTAATTAG
TCGATTTATTAGTGAACAAGGAAAAATATTATCTAGACGGGTAAATAGATTGACCTTAAAACAGCAACGCTTAATTACTATTGCTATAAAACAAGCTCGTATTTTATCTT
TGTTACCTTTTCTTAATAACGAGAAACAATTTGAAAGAAGCGAGTCGACCACTAGAACTATTGGTCTTAGAACCAGGAATAAATAG

mRNA sequence

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Protein sequence

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MDKSKRLLLKSKRSFRKRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERSESTTRTIGLRTRNK

Tan0006950 (gene) of Snake gourd v1 genome