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Tan0006956 (gene) of Snake gourd v1 genome

Gene IDTan0006956
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionCCHC-type domain-containing protein
Genome locationLG09:27247777..27248908
RNA-Seq ExpressionTan0006956
SyntenyTan0006956
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG5221692.1 CTV [Salix suchowensis]3.1e-0534.91Show/hide
Query:  SSWKTARGLTISSTHPPLESIQFESFNQTVTSNPFKLIDQKDEDSNPSKGLRGIQLQNNYTNKILYTMSQQMDRIEEQIRPKERSQPIASSNNFSFKETS
        S+W  + G TI S HPP+ ++Q E  N  V ++P+KL   KD+    +K    I LQNN+TN  L T+S+Q+ R+E+ ++    S    ++   S +   
Subjt:  SSWKTARGLTISSTHPPLESIQFESFNQTVTSNPFKLIDQKDEDSNPSKGLRGIQLQNNYTNKILYTMSQQMDRIEEQIRPKERSQPIASSNNFSFKETS

Query:  PAPYFK
          P FK
Subjt:  PAPYFK

KAG7969086.1 hypothetical protein I3843_07G012600 [Carya illinoinensis]8.3e-0626.18Show/hide
Query:  TISSTHPPLESIQFESFNQTVTSNPFKLIDQKDEDSNPSKGL---RGIQLQNNYTNKILYTMSQQMDRIEEQIRPK---ERSQPIASS------------
        T+ S+HPP E+I        +T++PFK  + +  D   +  L   + I  QNN++N  L T+ QQ+DRIEE+I      + S+P++ S            
Subjt:  TISSTHPPLESIQFESFNQTVTSNPFKLIDQKDEDSNPSKGL---RGIQLQNNYTNKILYTMSQQMDRIEEQIRPK---ERSQPIASS------------

Query:  --------------------NNFSFKETSPAPYFKTDVRIVPEEVRIGDSSTTTEAS--SSATTGRTIVKEEVQ------------------DVVFTLTH
                                 +++S +   K+   +  +E   G   TT +AS  S ++T R  ++  V+                  D V TL +
Subjt:  --------------------NNFSFKETSPAPYFKTDVRIVPEEVRIGDSSTTTEAS--SSATTGRTIVKEEVQ------------------DVVFTLTH

Query:  ALAKAFIGETNNCRTPASMTLNNLRCPKLQDFR
         + K FIG  +N     S  LNNLRC ++ D+R
Subjt:  ALAKAFIGETNNCRTPASMTLNNLRCPKLQDFR

MCI06861.1 hypothetical protein [Trifolium medium]1.3e-0644.3Show/hide
Query:  WKTARGLTISSTHPPLESIQF--ESFNQTVTSNPFKLIDQKDEDSNPSKGLRGIQLQNNYTNKILYTMSQQMDRIEEQI
        W+TAR   I S HPPLE+I+    + N  + ++PFK+I    E     K +  +  Q NYTN+ILYTMSQQ+DR+E+ +
Subjt:  WKTARGLTISSTHPPLESIQF--ESFNQTVTSNPFKLIDQKDEDSNPSKGLRGIQLQNNYTNKILYTMSQQMDRIEEQI

PKI55918.1 hypothetical protein CRG98_023703 [Punica granatum]2.4e-0540.26Show/hide
Query:  WKTARGLTISSTHPPLESIQFESFNQTVTSNPFKLIDQKDEDSNPSKGLRGIQLQNNYTNKILYTMSQQMDRIEEQI
        W  A    + STHPPL ++Q       V ++PFK+   K +DS  SK ++ I  QNN+TN+ L+T+  Q+DRIE+++
Subjt:  WKTARGLTISSTHPPLESIQFESFNQTVTSNPFKLIDQKDEDSNPSKGLRGIQLQNNYTNKILYTMSQQMDRIEEQI

XP_023520850.1 uncharacterized protein LOC111784362 [Cucurbita pepo subsp. pepo]3.0e-0838.78Show/hide
Query:  IIESSWKTARGLTISSTHPPLESIQFES-FNQTVTSNPFKLIDQKDEDSNPS-KGLRGIQLQNNYTNKILYTMSQQMDRIEEQIRPKERSQPIASSNN
        + + SWKT +   + S HPPLE ++F++ + + V ++PFK I +  E  NP+ K ++ IQ QNNY+NKIL T++ Q++ IE +I  K  +Q   +S++
Subjt:  IIESSWKTARGLTISSTHPPLESIQFES-FNQTVTSNPFKLIDQKDEDSNPS-KGLRGIQLQNNYTNKILYTMSQQMDRIEEQIRPKERSQPIASSNN

TrEMBL top hitse value%identityAlignment
A0A1J3G1J9 Uncharacterized protein (Fragment)6.8e-0631.5Show/hide
Query:  WKTARGLTISSTHPPLESIQFESFNQTVTSNPFKL-IDQKDEDSNPSKGLRGIQLQNNYTNKILYTMSQQMDRIEEQIRPKERSQPIASSNNFSFKETSP
        W+   G  I S HPPL  I+ ++ N+ + + PFK   + KD D    +G++ +  QNNY ++ILYT+S+Q+D ++  +   +  Q +   + FS   ++ 
Subjt:  WKTARGLTISSTHPPLESIQFESFNQTVTSNPFKL-IDQKDEDSNPSKGLRGIQLQNNYTNKILYTMSQQMDRIEEQIRPKERSQPIASSNNFSFKETSP

Query:  APYFKTDVRIV--PEEVRIGDSSTTTE
        AP FK   R +  PE   +   +T  E
Subjt:  APYFKTDVRIV--PEEVRIGDSSTTTE

A0A1J3J6U2 Movement protein (Fragment)2.0e-0534.29Show/hide
Query:  WKTARGLTISSTHPPLESIQFESFNQTVTSNPFKL-IDQKDEDSNPSKGLRGIQLQNNYTNKILYTMSQQMDRIEEQIRPKERSQPIASSNNFSFKETSP
        W+   G  I S HPPL  I+ ++ ++ + + PFK   + KD D    + ++ +  QNNY ++ILYT+S+Q+D I+  +   +  Q I   + FS   T+ 
Subjt:  WKTARGLTISSTHPPLESIQFESFNQTVTSNPFKL-IDQKDEDSNPSKGLRGIQLQNNYTNKILYTMSQQMDRIEEQIRPKERSQPIASSNNFSFKETSP

Query:  APYFK
        AP FK
Subjt:  APYFK

A0A2I0JI29 CCHC-type domain-containing protein1.2e-0540.26Show/hide
Query:  WKTARGLTISSTHPPLESIQFESFNQTVTSNPFKLIDQKDEDSNPSKGLRGIQLQNNYTNKILYTMSQQMDRIEEQI
        W  A    + STHPPL ++Q       V ++PFK+   K +DS  SK ++ I  QNN+TN+ L+T+  Q+DRIE+++
Subjt:  WKTARGLTISSTHPPLESIQFESFNQTVTSNPFKLIDQKDEDSNPSKGLRGIQLQNNYTNKILYTMSQQMDRIEEQI

A0A392P476 Uncharacterized protein (Fragment)6.2e-0744.3Show/hide
Query:  WKTARGLTISSTHPPLESIQF--ESFNQTVTSNPFKLIDQKDEDSNPSKGLRGIQLQNNYTNKILYTMSQQMDRIEEQI
        W+TAR   I S HPPLE+I+    + N  + ++PFK+I    E     K +  +  Q NYTN+ILYTMSQQ+DR+E+ +
Subjt:  WKTARGLTISSTHPPLESIQF--ESFNQTVTSNPFKLIDQKDEDSNPSKGLRGIQLQNNYTNKILYTMSQQMDRIEEQI

A0A438GCW1 Uncharacterized protein4.4e-0526.2Show/hide
Query:  WKTARGLTISSTHPPLESIQFESFNQTVTSNPFKLIDQKDEDSNPSKGLRGIQLQNNYTNKILYTMSQQMDRIEEQIRPKERSQPIAS-----SNNFSFK
        WKT     I S HPP   I+       V ++PFK    +D+    +  +R I  QNNYTN  L T++Q +               +A       N  +F+
Subjt:  WKTARGLTISSTHPPLESIQFESFNQTVTSNPFKLIDQKDEDSNPSKGLRGIQLQNNYTNKILYTMSQQMDRIEEQIRPKERSQPIAS-----SNNFSFK

Query:  ETSPAPYFKTDVRIVPEEVRIGDSSTTTEASSSATTGRTIVKEEVQDVVFTLTHALAKAFIGETNNCRTPASMTLNNLRCPKLQDFR
        + +           + +  RI + +   +             ++++DVV TL ++++K FIG++   +   +  L NL+CPKL DFR
Subjt:  ETSPAPYFKTDVRIVPEEVRIGDSSTTTEASSSATTGRTIVKEEVQDVVFTLTHALAKAFIGETNNCRTPASMTLNNLRCPKLQDFR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATCATTGAGTCCTCATGGAAGACAGCTAGAGGCCTTACAATAAGCTCGACTCATCCACCATTAGAATCAATACAGTTTGAAAGCTTCAACCAAACTGTGACATCGAA
TCCATTCAAACTAATTGATCAGAAAGATGAAGACTCTAATCCTTCTAAAGGACTAAGAGGTATACAACTTCAAAATAATTATACAAACAAGATCTTGTATACCATGTCTC
AACAGATGGACAGAATAGAAGAACAAATCAGACCAAAAGAAAGGTCACAACCGATTGCTTCCTCTAACAATTTCTCTTTCAAAGAAACATCTCCAGCTCCTTACTTCAAA
ACAGATGTCAGAATAGTGCCAGAAGAAGTCCGAATTGGAGACTCTTCAACGACGACAGAAGCATCATCGTCGGCCACTACAGGTCGAACGATAGTAAAAGAAGAAGTACA
AGATGTAGTATTCACCCTTACACATGCTTTAGCAAAGGCATTCATAGGGGAGACTAACAATTGCCGAACTCCAGCTAGTATGACTTTGAACAACCTGAGATGCCCAAAGC
TGCAAGACTTCAGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGATCATTGAGTCCTCATGGAAGACAGCTAGAGGCCTTACAATAAGCTCGACTCATCCACCATTAGAATCAATACAGTTTGAAAGCTTCAACCAAACTGTGACATCGAA
TCCATTCAAACTAATTGATCAGAAAGATGAAGACTCTAATCCTTCTAAAGGACTAAGAGGTATACAACTTCAAAATAATTATACAAACAAGATCTTGTATACCATGTCTC
AACAGATGGACAGAATAGAAGAACAAATCAGACCAAAAGAAAGGTCACAACCGATTGCTTCCTCTAACAATTTCTCTTTCAAAGAAACATCTCCAGCTCCTTACTTCAAA
ACAGATGTCAGAATAGTGCCAGAAGAAGTCCGAATTGGAGACTCTTCAACGACGACAGAAGCATCATCGTCGGCCACTACAGGTCGAACGATAGTAAAAGAAGAAGTACA
AGATGTAGTATTCACCCTTACACATGCTTTAGCAAAGGCATTCATAGGGGAGACTAACAATTGCCGAACTCCAGCTAGTATGACTTTGAACAACCTGAGATGCCCAAAGC
TGCAAGACTTCAGGTGA
Protein sequenceShow/hide protein sequence
MIIESSWKTARGLTISSTHPPLESIQFESFNQTVTSNPFKLIDQKDEDSNPSKGLRGIQLQNNYTNKILYTMSQQMDRIEEQIRPKERSQPIASSNNFSFKETSPAPYFK
TDVRIVPEEVRIGDSSTTTEASSSATTGRTIVKEEVQDVVFTLTHALAKAFIGETNNCRTPASMTLNNLRCPKLQDFR