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Tan0006993 (gene) of Snake gourd v1 genome

Gene IDTan0006993
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionSWIM-type domain-containing protein
Genome locationLG07:11419287..11419923
RNA-Seq ExpressionTan0006993
SyntenyTan0006993
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR006564 - Zinc finger, PMZ-type
IPR007527 - Zinc finger, SWIM-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047595.1 uncharacterized protein E6C27_scaffold115G00630 [Cucumis melo var. makuwa]2.8e-3041.53Show/hide
Query:  MLESIRIVIQAWFYERKNDVDYQATYLSKVAEDELREIIYNCRRFQVFPVNNHFYQVIDGSCQHEVDLSNRSCTCCAWDQLEIPCSHACVVLSHRHLSIK
        +LESIR +IQ WFYER+    +Q T LS  AED +RE +   R   ++PV+ H ++V     Q  V++ NR+C+C  WD   IPCSHAC+ LS R+L++ 
Subjt:  MLESIRIVIQAWFYERKNDVDYQATYLSKVAEDELREIIYNCRRFQVFPVNNHFYQVIDGSCQHEVDLSNRSCTCCAWDQLEIPCSHACVVLSHRHLSIK

Query:  DYVSSSYSINLLCSKYVGSINPVDNEERWDILESLKSIKILPPNVKRVVGRPKKTCIPSPLEFKRRVKCGRCGRIGHNKKACK
         Y +  Y ++ L + Y     P+    +        +  ILPP VKR  GRPKK    S LE K  V+C RCG+ GHN + CK
Subjt:  DYVSSSYSINLLCSKYVGSINPVDNEERWDILESLKSIKILPPNVKRVVGRPKKTCIPSPLEFKRRVKCGRCGRIGHNKKACK

TYK09853.1 uncharacterized protein E5676_scaffold39G00210 [Cucumis melo var. makuwa]1.3e-3041.53Show/hide
Query:  MLESIRIVIQAWFYERKNDVDYQATYLSKVAEDELREIIYNCRRFQVFPVNNHFYQVIDGSCQHEVDLSNRSCTCCAWDQLEIPCSHACVVLSHRHLSIK
        +LESIR +IQ WFYER+    +Q T LS  AED +RE +   R   ++PV+ H ++V     Q  V++ NR+C+C  WD   IPCSHAC+ LS R+L++ 
Subjt:  MLESIRIVIQAWFYERKNDVDYQATYLSKVAEDELREIIYNCRRFQVFPVNNHFYQVIDGSCQHEVDLSNRSCTCCAWDQLEIPCSHACVVLSHRHLSIK

Query:  DYVSSSYSINLLCSKYVGSINPVDNEERWDILESLKSIKILPPNVKRVVGRPKKTCIPSPLEFKRRVKCGRCGRIGHNKKACK
         Y    Y ++ L + Y     P+    +        +  ILPP VKR  GRPKK    S LE K  V+C RCG+ GHN ++CK
Subjt:  DYVSSSYSINLLCSKYVGSINPVDNEERWDILESLKSIKILPPNVKRVVGRPKKTCIPSPLEFKRRVKCGRCGRIGHNKKACK

XP_008450195.1 PREDICTED: uncharacterized protein LOC103491855 [Cucumis melo]1.5e-3141.27Show/hide
Query:  MLESIRIVIQAWFYERKNDVDYQATYLSKVAEDELREIIYNCRRFQVFPVNNHFYQVIDGSCQHEVDLSNRSCTCCAWDQLEIPCSHACVVLSHRHLSIK
        +LESIR ++Q WFYER+    +Q T LS  AED +RE +   R   ++PV+ H ++V   + Q  V++ NR+C+CC WD   IPCSHAC+ LS R+L++ 
Subjt:  MLESIRIVIQAWFYERKNDVDYQATYLSKVAEDELREIIYNCRRFQVFPVNNHFYQVIDGSCQHEVDLSNRSCTCCAWDQLEIPCSHACVVLSHRHLSIK

Query:  DYVSSSYSINLLCSKY------VGSINPVDNEERWDILESLKSIKILPPNVKRVVGRPKKTCIPSPLEFKRRVKCGRCGRIGHNKKACK
         Y    Y ++ L + Y      +GS+N + N  +        +  ILP  VKR+ GRPKK    S LE K  V+C RCG+ GHN ++CK
Subjt:  DYVSSSYSINLLCSKY------VGSINPVDNEERWDILESLKSIKILPPNVKRVVGRPKKTCIPSPLEFKRRVKCGRCGRIGHNKKACK

XP_022155207.1 uncharacterized protein LOC111022347 [Momordica charantia]3.4e-3646.28Show/hide
Query:  MLESIRIVIQAWFYERKNDVDYQATYLSKVAEDELREIIYNCRRFQVFPVNNHFYQVIDGSCQHEVDLSNRSCTCCAWDQLEIPCSHACVVLSHRHLSIK
        MLE +R+++Q WFY+R+NDVD+Q T  +K AE +L E I  CR  +V+ VNN  YQ                                      +HL  K
Subjt:  MLESIRIVIQAWFYERKNDVDYQATYLSKVAEDELREIIYNCRRFQVFPVNNHFYQVIDGSCQHEVDLSNRSCTCCAWDQLEIPCSHACVVLSHRHLSIK

Query:  DYVSSSYSINLLCSKYVGSINPVDNEERWDILESLKSIKILPPNVKRVVGRPKKTCIPSPLEFKRRVKCGRCGRIGHNKKACKYALTQ
         YVSS YS N L S Y GSI+P+ ++  W+I E +K IK+L PNVKR  GRPKK  IPS LEFK+RVKC RCGR GHN+K+CK++LTQ
Subjt:  DYVSSSYSINLLCSKYVGSINPVDNEERWDILESLKSIKILPPNVKRVVGRPKKTCIPSPLEFKRRVKCGRCGRIGHNKKACKYALTQ

XP_038880504.1 uncharacterized protein LOC120072166 [Benincasa hispida]8.8e-3242.93Show/hide
Query:  MLESIRIVIQAWFYERKNDVDYQATYLSKVAEDELREIIYNCRRFQVFPVNNHFYQVIDGSCQHEVDLSNRSCTCCAWDQLEIPCSHACVVLSHRHLSIK
        +L+ IR ++Q WFYE+          L+  AE ELRE     R F+V P+NN  Y+VIDG     V+L+ +SC+C  WD +EIPC+HAC V+   +L I 
Subjt:  MLESIRIVIQAWFYERKNDVDYQATYLSKVAEDELREIIYNCRRFQVFPVNNHFYQVIDGSCQHEVDLSNRSCTCCAWDQLEIPCSHACVVLSHRHLSIK

Query:  DYVSSSYSINLLCSKYVGSINPVDNEERWDILESLKSIKILPPNVKRVVGRPKKTCIPSPLEFKRRVKCGRCGRIGHNKKACKY
         +V   Y  + L S Y GS+ P+ N   W  ++    + +LPP VKR VGRP+K  I S  E KR  KC RC R GHN + CK+
Subjt:  DYVSSSYSINLLCSKYVGSINPVDNEERWDILESLKSIKILPPNVKRVVGRPKKTCIPSPLEFKRRVKCGRCGRIGHNKKACKY

TrEMBL top hitse value%identityAlignment
A0A1S3BPC4 uncharacterized protein LOC1034918557.2e-3241.27Show/hide
Query:  MLESIRIVIQAWFYERKNDVDYQATYLSKVAEDELREIIYNCRRFQVFPVNNHFYQVIDGSCQHEVDLSNRSCTCCAWDQLEIPCSHACVVLSHRHLSIK
        +LESIR ++Q WFYER+    +Q T LS  AED +RE +   R   ++PV+ H ++V   + Q  V++ NR+C+CC WD   IPCSHAC+ LS R+L++ 
Subjt:  MLESIRIVIQAWFYERKNDVDYQATYLSKVAEDELREIIYNCRRFQVFPVNNHFYQVIDGSCQHEVDLSNRSCTCCAWDQLEIPCSHACVVLSHRHLSIK

Query:  DYVSSSYSINLLCSKY------VGSINPVDNEERWDILESLKSIKILPPNVKRVVGRPKKTCIPSPLEFKRRVKCGRCGRIGHNKKACK
         Y    Y ++ L + Y      +GS+N + N  +        +  ILP  VKR+ GRPKK    S LE K  V+C RCG+ GHN ++CK
Subjt:  DYVSSSYSINLLCSKY------VGSINPVDNEERWDILESLKSIKILPPNVKRVVGRPKKTCIPSPLEFKRRVKCGRCGRIGHNKKACK

A0A5A7T2S1 Uncharacterized protein5.2e-3040.98Show/hide
Query:  MLESIRIVIQAWFYERKNDVDYQATYLSKVAEDELREIIYNCRRFQVFPVNNHFYQVIDGSCQHEVDLSNRSCTCCAWDQLEIPCSHACVVLSHRHLSIK
        +LESIR +IQ WFYE +    +Q T LS  AED +RE +   R   ++PV+ H ++V     Q  V++ NR+C+C  WD   IPCSHAC+ LS R+L++ 
Subjt:  MLESIRIVIQAWFYERKNDVDYQATYLSKVAEDELREIIYNCRRFQVFPVNNHFYQVIDGSCQHEVDLSNRSCTCCAWDQLEIPCSHACVVLSHRHLSIK

Query:  DYVSSSYSINLLCSKYVGSINPVDNEERWDILESLKSIKILPPNVKRVVGRPKKTCIPSPLEFKRRVKCGRCGRIGHNKKACK
         Y    Y ++ L + Y     P+    +        +  ILPP VKR  GRPKK    S LE K  V+C RCG+ GHN ++CK
Subjt:  DYVSSSYSINLLCSKYVGSINPVDNEERWDILESLKSIKILPPNVKRVVGRPKKTCIPSPLEFKRRVKCGRCGRIGHNKKACK

A0A5A7U1T3 Uncharacterized protein1.4e-3041.53Show/hide
Query:  MLESIRIVIQAWFYERKNDVDYQATYLSKVAEDELREIIYNCRRFQVFPVNNHFYQVIDGSCQHEVDLSNRSCTCCAWDQLEIPCSHACVVLSHRHLSIK
        +LESIR +IQ WFYER+    +Q T LS  AED +RE +   R   ++PV+ H ++V     Q  V++ NR+C+C  WD   IPCSHAC+ LS R+L++ 
Subjt:  MLESIRIVIQAWFYERKNDVDYQATYLSKVAEDELREIIYNCRRFQVFPVNNHFYQVIDGSCQHEVDLSNRSCTCCAWDQLEIPCSHACVVLSHRHLSIK

Query:  DYVSSSYSINLLCSKYVGSINPVDNEERWDILESLKSIKILPPNVKRVVGRPKKTCIPSPLEFKRRVKCGRCGRIGHNKKACK
         Y +  Y ++ L + Y     P+    +        +  ILPP VKR  GRPKK    S LE K  V+C RCG+ GHN + CK
Subjt:  DYVSSSYSINLLCSKYVGSINPVDNEERWDILESLKSIKILPPNVKRVVGRPKKTCIPSPLEFKRRVKCGRCGRIGHNKKACK

A0A5D3CDB8 Uncharacterized protein6.1e-3141.53Show/hide
Query:  MLESIRIVIQAWFYERKNDVDYQATYLSKVAEDELREIIYNCRRFQVFPVNNHFYQVIDGSCQHEVDLSNRSCTCCAWDQLEIPCSHACVVLSHRHLSIK
        +LESIR +IQ WFYER+    +Q T LS  AED +RE +   R   ++PV+ H ++V     Q  V++ NR+C+C  WD   IPCSHAC+ LS R+L++ 
Subjt:  MLESIRIVIQAWFYERKNDVDYQATYLSKVAEDELREIIYNCRRFQVFPVNNHFYQVIDGSCQHEVDLSNRSCTCCAWDQLEIPCSHACVVLSHRHLSIK

Query:  DYVSSSYSINLLCSKYVGSINPVDNEERWDILESLKSIKILPPNVKRVVGRPKKTCIPSPLEFKRRVKCGRCGRIGHNKKACK
         Y    Y ++ L + Y     P+    +        +  ILPP VKR  GRPKK    S LE K  V+C RCG+ GHN ++CK
Subjt:  DYVSSSYSINLLCSKYVGSINPVDNEERWDILESLKSIKILPPNVKRVVGRPKKTCIPSPLEFKRRVKCGRCGRIGHNKKACK

A0A6J1DNQ8 uncharacterized protein LOC1110223471.7e-3646.28Show/hide
Query:  MLESIRIVIQAWFYERKNDVDYQATYLSKVAEDELREIIYNCRRFQVFPVNNHFYQVIDGSCQHEVDLSNRSCTCCAWDQLEIPCSHACVVLSHRHLSIK
        MLE +R+++Q WFY+R+NDVD+Q T  +K AE +L E I  CR  +V+ VNN  YQ                                      +HL  K
Subjt:  MLESIRIVIQAWFYERKNDVDYQATYLSKVAEDELREIIYNCRRFQVFPVNNHFYQVIDGSCQHEVDLSNRSCTCCAWDQLEIPCSHACVVLSHRHLSIK

Query:  DYVSSSYSINLLCSKYVGSINPVDNEERWDILESLKSIKILPPNVKRVVGRPKKTCIPSPLEFKRRVKCGRCGRIGHNKKACKYALTQ
         YVSS YS N L S Y GSI+P+ ++  W+I E +K IK+L PNVKR  GRPKK  IPS LEFK+RVKC RCGR GHN+K+CK++LTQ
Subjt:  DYVSSSYSINLLCSKYVGSINPVDNEERWDILESLKSIKILPPNVKRVVGRPKKTCIPSPLEFKRRVKCGRCGRIGHNKKACKYALTQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGGAATCCATACGAATAGTAATTCAAGCGTGGTTTTATGAGCGTAAGAATGATGTTGATTATCAAGCAACGTACCTATCAAAAGTTGCTGAAGATGAATTACGAGA
AATTATCTACAACTGTCGTAGATTCCAGGTATTCCCAGTTAATAATCATTTCTATCAAGTAATTGATGGATCATGTCAACATGAAGTGGATTTGAGTAATAGGAGTTGTA
CATGTTGTGCATGGGACCAATTAGAAATACCATGTTCCCATGCATGTGTCGTCTTAAGTCATAGGCACTTATCGATTAAAGATTATGTTTCGTCATCATATTCGATCAAT
TTATTGTGTTCCAAATATGTTGGTTCAATCAATCCTGTTGATAATGAAGAGCGTTGGGATATACTTGAATCCTTGAAAAGCATTAAGATTTTGCCACCAAATGTCAAACG
TGTTGTTGGTAGACCAAAGAAGACATGTATCCCTTCACCTTTGGAGTTTAAAAGGCGAGTCAAATGTGGAAGATGTGGAAGGATTGGTCACAACAAGAAGGCTTGCAAGT
ATGCCCTTACGCAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTGGAATCCATACGAATAGTAATTCAAGCGTGGTTTTATGAGCGTAAGAATGATGTTGATTATCAAGCAACGTACCTATCAAAAGTTGCTGAAGATGAATTACGAGA
AATTATCTACAACTGTCGTAGATTCCAGGTATTCCCAGTTAATAATCATTTCTATCAAGTAATTGATGGATCATGTCAACATGAAGTGGATTTGAGTAATAGGAGTTGTA
CATGTTGTGCATGGGACCAATTAGAAATACCATGTTCCCATGCATGTGTCGTCTTAAGTCATAGGCACTTATCGATTAAAGATTATGTTTCGTCATCATATTCGATCAAT
TTATTGTGTTCCAAATATGTTGGTTCAATCAATCCTGTTGATAATGAAGAGCGTTGGGATATACTTGAATCCTTGAAAAGCATTAAGATTTTGCCACCAAATGTCAAACG
TGTTGTTGGTAGACCAAAGAAGACATGTATCCCTTCACCTTTGGAGTTTAAAAGGCGAGTCAAATGTGGAAGATGTGGAAGGATTGGTCACAACAAGAAGGCTTGCAAGT
ATGCCCTTACGCAGTAG
Protein sequenceShow/hide protein sequence
MLESIRIVIQAWFYERKNDVDYQATYLSKVAEDELREIIYNCRRFQVFPVNNHFYQVIDGSCQHEVDLSNRSCTCCAWDQLEIPCSHACVVLSHRHLSIKDYVSSSYSIN
LLCSKYVGSINPVDNEERWDILESLKSIKILPPNVKRVVGRPKKTCIPSPLEFKRRVKCGRCGRIGHNKKACKYALTQ