CuGenDBv2

Gene ID	Tan0006999
Organism	Trichosanthes anguina (Snake gourd v1)
Description	protein LOW PSII ACCUMULATION 1, chloroplastic
Genome location	LG07:73077227..73081507
RNA-Seq Expression	Tan0006999
Synteny	Tan0006999
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR021883 - Protein LOW PSII ACCUMULATION 1-like

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_022131239.1 protein LOW PSII ACCUMULATION 1, chloroplastic [Momordica charantia]

5.5e-162

88.15

Show/hide

Query:  VSSCNNLSRPPHFPRYRSHNAHNFKFYRRICCHVHRKTVSFTFGPNLAESLRSLQHTRPNLANLTCSAADKPEISSTAKIRSEVLSPFRSVRMFFYLAFI
        +SS NN   PPH PR RSHNAHNFKFYR ICC VH KTV F+ GP+LAESLR LQ  R NLAN TCSAA+KPEISSTAKIRSEVLSPFRSVRMFFYL FI
Subjt:  VSSCNNLSRPPHFPRYRSHNAHNFKFYRRICCHVHRKTVSFTFGPNLAESLRSLQHTRPNLANLTCSAADKPEISSTAKIRSEVLSPFRSVRMFFYLAFI

Query:  ASGTLGGLIATTQLLAALANPSRAEEVPEILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGPES
        ASGTLGGLIATTQLLAALAN SRAE+VP+ILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQ+KVIP+ +LRGIARLVICAGPES
Subjt:  ASGTLGGLIATTQLLAALANPSRAEEVPEILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGPES

Query:  FVMEAFKSSEPFTERLLERGVLVVPLATDVSSLNFEFDEREEVKDITTKRKRLWRLTPVFMPEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRGSGVGY
        F+MEAF+SSEPFTE+LLERGV+VVP ATDVSSLNFEFDERE++KD+TTKRKRLWRLTPV+MPEWSAWLDEQKKLAGVS++SPVYLSLRMDGRVRGSGVGY
Subjt:  FVMEAFKSSEPFTERLLERGVLVVPLATDVSSLNFEFDEREEVKDITTKRKRLWRLTPVFMPEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRGSGVGY

Query:  PPWNALVAQLPPVKGLWSGLLDGMDGRVL
        PPWNALVAQLPPVKGLWSGLLDGMDGRVL
Subjt:  PPWNALVAQLPPVKGLWSGLLDGMDGRVL

XP_022963501.1 protein LOW PSII ACCUMULATION 1, chloroplastic [Cucurbita moschata]

2.9e-163

88.18

Show/hide

Query:  VVSSCNNLSRPPHFPRYRSHNAHNFKFYRRICCHVHRKTVSFTFGPNLAESLRSLQHTRPNLANLTCSAADKPEISSTAKIRSEVLSPFRSVRMFFYLAF
        ++ SCNN  RPPH  R RSHNA N KF RRICCHVHR  VSF FGP++A+SLR LQ+ R NLA++TCSA+DKPEISSTAKIRSEVLSPFRSVRMFFYL F
Subjt:  VVSSCNNLSRPPHFPRYRSHNAHNFKFYRRICCHVHRKTVSFTFGPNLAESLRSLQHTRPNLANLTCSAADKPEISSTAKIRSEVLSPFRSVRMFFYLAF

Query:  IASGTLGGLIATTQLLAALANPSRAEEVPEILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGPE
        IASGTLGGLIATTQLLAALAN SRAEEVP+IL GLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVI ISTLRGIARLVICAGPE
Subjt:  IASGTLGGLIATTQLLAALANPSRAEEVPEILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGPE

Query:  SFVMEAFKSSEPFTERLLERGVLVVPLATDVSSLNFEFDEREEVKDITTKRKRLWRLTPVFMPEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRGSGVG
        SF+MEAFK+SEPFTERLLERGVLV+P ATD SSLNFEFDEREE+KDITTKRKRLWRLTPV+M +WSAWLD+QKKLAGVSSDSPVYLSLRMDGRVRGSGVG
Subjt:  SFVMEAFKSSEPFTERLLERGVLVVPLATDVSSLNFEFDEREEVKDITTKRKRLWRLTPVFMPEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRGSGVG

Query:  YPPWNALVAQLPPVKGLWSGLLDGMDGRVL
        YPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Subjt:  YPPWNALVAQLPPVKGLWSGLLDGMDGRVL

XP_022967293.1 protein LOW PSII ACCUMULATION 1, chloroplastic [Cucurbita maxima]

4.9e-163

87.88

Show/hide

Query:  VVSSCNNLSRPPHFPRYRSHNAHNFKFYRRICCHVHRKTVSFTFGPNLAESLRSLQHTRPNLANLTCSAADKPEISSTAKIRSEVLSPFRSVRMFFYLAF
        ++ SCNN  RPPH  R RSHNAHN KF RRICCHVHR  VSF FGP++A+SLR LQ+ R NLA++TCSA+DKPEISSTAKIRSEVLSPFRSVRMFFYL F
Subjt:  VVSSCNNLSRPPHFPRYRSHNAHNFKFYRRICCHVHRKTVSFTFGPNLAESLRSLQHTRPNLANLTCSAADKPEISSTAKIRSEVLSPFRSVRMFFYLAF

Query:  IASGTLGGLIATTQLLAALANPSRAEEVPEILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGPE
        IASGTLGGLIATTQLLAALAN SRAEEVP+IL GLGIDFGAVA FAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVI ISTLRGIARLVICAGPE
Subjt:  IASGTLGGLIATTQLLAALANPSRAEEVPEILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGPE

Query:  SFVMEAFKSSEPFTERLLERGVLVVPLATDVSSLNFEFDEREEVKDITTKRKRLWRLTPVFMPEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRGSGVG
        S +MEAFK+SEPFTERLLERGVLV+P ATD SSLNFEFDEREE+KDITTKRKRLWRLTPV+M +WSAWLD+QKKLAGVSSDSPVYLSLRMDGRVRGSGVG
Subjt:  SFVMEAFKSSEPFTERLLERGVLVVPLATDVSSLNFEFDEREEVKDITTKRKRLWRLTPVFMPEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRGSGVG

Query:  YPPWNALVAQLPPVKGLWSGLLDGMDGRVL
        YPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Subjt:  YPPWNALVAQLPPVKGLWSGLLDGMDGRVL

XP_023554665.1 protein LOW PSII ACCUMULATION 1, chloroplastic [Cucurbita pepo subsp. pepo]

8.4e-163

87.88

Show/hide

Query:  VVSSCNNLSRPPHFPRYRSHNAHNFKFYRRICCHVHRKTVSFTFGPNLAESLRSLQHTRPNLANLTCSAADKPEISSTAKIRSEVLSPFRSVRMFFYLAF
        ++ SCNN  RPPH  R RSHNA N KF RRICCHVHR  VSF FGP++A+SLR LQ+ R NLA++TCSA+DKPEISSTAKIRSEVLSPFRSVRMFFYL F
Subjt:  VVSSCNNLSRPPHFPRYRSHNAHNFKFYRRICCHVHRKTVSFTFGPNLAESLRSLQHTRPNLANLTCSAADKPEISSTAKIRSEVLSPFRSVRMFFYLAF

Query:  IASGTLGGLIATTQLLAALANPSRAEEVPEILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGPE
        IASGTLGGLIATTQLLAALAN SRAEEVP+IL GLGIDFGAVA FAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVI ISTLRGIARLVICAGPE
Subjt:  IASGTLGGLIATTQLLAALANPSRAEEVPEILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGPE

Query:  SFVMEAFKSSEPFTERLLERGVLVVPLATDVSSLNFEFDEREEVKDITTKRKRLWRLTPVFMPEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRGSGVG
        SF+MEAFK+SEPFTERLLERGVLV+P ATD SSLNFEFDEREE+KDITTKRKRLWRLTPV+M +WSAWLD+QKKLAGVSSDSPVYLSLRMDGRVRGSGVG
Subjt:  SFVMEAFKSSEPFTERLLERGVLVVPLATDVSSLNFEFDEREEVKDITTKRKRLWRLTPVFMPEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRGSGVG

Query:  YPPWNALVAQLPPVKGLWSGLLDGMDGRVL
        YPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Subjt:  YPPWNALVAQLPPVKGLWSGLLDGMDGRVL

XP_038888898.1 protein LOW PSII ACCUMULATION 1, chloroplastic [Benincasa hispida]

1.4e-162

89.67

Show/hide

Query:  VSSCNNLSRPPHFPRYRSHNAHNFKFYRRICCHVHRKTVSFTFGPNLAESLRSLQHTRPNLANLTCSAADKPEISSTAKIRSEVLSPFRSVRMFFYLAFI
        +SSCNN++RPPHF R       +FKF RRICCHVHRKT+SF   P L +SL SL + R NLAN TCSAADKPEISSTAKIRSEVLSPFRSVRMFFYL FI
Subjt:  VSSCNNLSRPPHFPRYRSHNAHNFKFYRRICCHVHRKTVSFTFGPNLAESLRSLQHTRPNLANLTCSAADKPEISSTAKIRSEVLSPFRSVRMFFYLAFI

Query:  ASGTLGGLIATTQLLAALANPSRAEEVPEILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGPES
        ASGTLGGLIATTQLLAALAN SRAEEVP+ILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGPES
Subjt:  ASGTLGGLIATTQLLAALANPSRAEEVPEILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGPES

Query:  FVMEAFKSSEPFTERLLERGVLVVPLATDVSSLNFEFDEREEVKDITTKRKRLWRLTPVFMPEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRGSGVGY
        F+MEAFKSSEPFTERLLERGVLVVPLATDVS+LNFEFDEREEVKD+TTKRKRLWRLTPV+M EWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRGSGVGY
Subjt:  FVMEAFKSSEPFTERLLERGVLVVPLATDVSSLNFEFDEREEVKDITTKRKRLWRLTPVFMPEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRGSGVGY

Query:  PPWNALVAQLPPVKGLWSGLLDGMDGRVL
        PPWNALVAQLPPVKGLWSGLLDGMDGRVL
Subjt:  PPWNALVAQLPPVKGLWSGLLDGMDGRVL

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BHU5 protein LOW PSII ACCUMULATION 1, chloroplastic

9.7e-157

87.01

Show/hide

Query:  MVVSSCNNLSRPPHFPRYRSHNAHNFKFYRRICCHVHRKTVSFTFGPNLAESLRSLQHTRPNLANLTCSAADKPEISSTAKIRSEVLSPFRSVRMFFYLA
        ++VSS NN++ PPHF    SHNA +FKF RR C HVHRKTVSF+  P L  SLR   + R NLAN   SAADKPEISSTAKIRSEVLSPFRSVRMFFYL 
Subjt:  MVVSSCNNLSRPPHFPRYRSHNAHNFKFYRRICCHVHRKTVSFTFGPNLAESLRSLQHTRPNLANLTCSAADKPEISSTAKIRSEVLSPFRSVRMFFYLA

Query:  FIASGTLGGLIATTQLLAALANPSRAEEVPEILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGP
        FIASGTLGGLIATTQLL ALAN SRA+EVP+ILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGP
Subjt:  FIASGTLGGLIATTQLLAALANPSRAEEVPEILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGP

Query:  ESFVMEAFKSSEPFTERLLERGVLVVPLATDVSSLNFEFDEREEVKDITTKRKRLWRLTPVFMPEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRGSGV
        ESFV+EAFKSSEPFTE+LLERGVLVVPLATDV++LNFEFDEREEVKDIT+KRK+LWRLTPV+M EWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRGSGV
Subjt:  ESFVMEAFKSSEPFTERLLERGVLVVPLATDVSSLNFEFDEREEVKDITTKRKRLWRLTPVFMPEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRGSGV

Query:  GYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
        GYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Subjt:  GYPPWNALVAQLPPVKGLWSGLLDGMDGRVL

A0A5D3BG35 Protein LOW PSII ACCUMULATION 1

9.7e-157

87.01

Show/hide

Query:  MVVSSCNNLSRPPHFPRYRSHNAHNFKFYRRICCHVHRKTVSFTFGPNLAESLRSLQHTRPNLANLTCSAADKPEISSTAKIRSEVLSPFRSVRMFFYLA
        ++VSS NN++ PPHF    SHNA +FKF RR C HVHRKTVSF+  P L  SLR   + R NLAN   SAADKPEISSTAKIRSEVLSPFRSVRMFFYL 
Subjt:  MVVSSCNNLSRPPHFPRYRSHNAHNFKFYRRICCHVHRKTVSFTFGPNLAESLRSLQHTRPNLANLTCSAADKPEISSTAKIRSEVLSPFRSVRMFFYLA

Query:  FIASGTLGGLIATTQLLAALANPSRAEEVPEILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGP
        FIASGTLGGLIATTQLL ALAN SRA+EVP+ILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGP
Subjt:  FIASGTLGGLIATTQLLAALANPSRAEEVPEILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGP

Query:  ESFVMEAFKSSEPFTERLLERGVLVVPLATDVSSLNFEFDEREEVKDITTKRKRLWRLTPVFMPEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRGSGV
        ESFV+EAFKSSEPFTE+LLERGVLVVPLATDV++LNFEFDEREEVKDIT+KRK+LWRLTPV+M EWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRGSGV
Subjt:  ESFVMEAFKSSEPFTERLLERGVLVVPLATDVSSLNFEFDEREEVKDITTKRKRLWRLTPVFMPEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRGSGV

Query:  GYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
        GYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Subjt:  GYPPWNALVAQLPPVKGLWSGLLDGMDGRVL

A0A6J1BP58 protein LOW PSII ACCUMULATION 1, chloroplastic

2.6e-162

88.15

Show/hide

Query:  VSSCNNLSRPPHFPRYRSHNAHNFKFYRRICCHVHRKTVSFTFGPNLAESLRSLQHTRPNLANLTCSAADKPEISSTAKIRSEVLSPFRSVRMFFYLAFI
        +SS NN   PPH PR RSHNAHNFKFYR ICC VH KTV F+ GP+LAESLR LQ  R NLAN TCSAA+KPEISSTAKIRSEVLSPFRSVRMFFYL FI
Subjt:  VSSCNNLSRPPHFPRYRSHNAHNFKFYRRICCHVHRKTVSFTFGPNLAESLRSLQHTRPNLANLTCSAADKPEISSTAKIRSEVLSPFRSVRMFFYLAFI

Query:  ASGTLGGLIATTQLLAALANPSRAEEVPEILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGPES
        ASGTLGGLIATTQLLAALAN SRAE+VP+ILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQ+KVIP+ +LRGIARLVICAGPES
Subjt:  ASGTLGGLIATTQLLAALANPSRAEEVPEILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGPES

Query:  FVMEAFKSSEPFTERLLERGVLVVPLATDVSSLNFEFDEREEVKDITTKRKRLWRLTPVFMPEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRGSGVGY
        F+MEAF+SSEPFTE+LLERGV+VVP ATDVSSLNFEFDERE++KD+TTKRKRLWRLTPV+MPEWSAWLDEQKKLAGVS++SPVYLSLRMDGRVRGSGVGY
Subjt:  FVMEAFKSSEPFTERLLERGVLVVPLATDVSSLNFEFDEREEVKDITTKRKRLWRLTPVFMPEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRGSGVGY

Query:  PPWNALVAQLPPVKGLWSGLLDGMDGRVL
        PPWNALVAQLPPVKGLWSGLLDGMDGRVL
Subjt:  PPWNALVAQLPPVKGLWSGLLDGMDGRVL

A0A6J1HGA1 protein LOW PSII ACCUMULATION 1, chloroplastic

1.4e-163

88.18

Show/hide

Query:  VVSSCNNLSRPPHFPRYRSHNAHNFKFYRRICCHVHRKTVSFTFGPNLAESLRSLQHTRPNLANLTCSAADKPEISSTAKIRSEVLSPFRSVRMFFYLAF
        ++ SCNN  RPPH  R RSHNA N KF RRICCHVHR  VSF FGP++A+SLR LQ+ R NLA++TCSA+DKPEISSTAKIRSEVLSPFRSVRMFFYL F
Subjt:  VVSSCNNLSRPPHFPRYRSHNAHNFKFYRRICCHVHRKTVSFTFGPNLAESLRSLQHTRPNLANLTCSAADKPEISSTAKIRSEVLSPFRSVRMFFYLAF

Query:  IASGTLGGLIATTQLLAALANPSRAEEVPEILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGPE
        IASGTLGGLIATTQLLAALAN SRAEEVP+IL GLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVI ISTLRGIARLVICAGPE
Subjt:  IASGTLGGLIATTQLLAALANPSRAEEVPEILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGPE

Query:  SFVMEAFKSSEPFTERLLERGVLVVPLATDVSSLNFEFDEREEVKDITTKRKRLWRLTPVFMPEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRGSGVG
        SF+MEAFK+SEPFTERLLERGVLV+P ATD SSLNFEFDEREE+KDITTKRKRLWRLTPV+M +WSAWLD+QKKLAGVSSDSPVYLSLRMDGRVRGSGVG
Subjt:  SFVMEAFKSSEPFTERLLERGVLVVPLATDVSSLNFEFDEREEVKDITTKRKRLWRLTPVFMPEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRGSGVG

Query:  YPPWNALVAQLPPVKGLWSGLLDGMDGRVL
        YPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Subjt:  YPPWNALVAQLPPVKGLWSGLLDGMDGRVL

A0A6J1HWD0 protein LOW PSII ACCUMULATION 1, chloroplastic

2.4e-163

87.88

Show/hide

Query:  VVSSCNNLSRPPHFPRYRSHNAHNFKFYRRICCHVHRKTVSFTFGPNLAESLRSLQHTRPNLANLTCSAADKPEISSTAKIRSEVLSPFRSVRMFFYLAF
        ++ SCNN  RPPH  R RSHNAHN KF RRICCHVHR  VSF FGP++A+SLR LQ+ R NLA++TCSA+DKPEISSTAKIRSEVLSPFRSVRMFFYL F
Subjt:  VVSSCNNLSRPPHFPRYRSHNAHNFKFYRRICCHVHRKTVSFTFGPNLAESLRSLQHTRPNLANLTCSAADKPEISSTAKIRSEVLSPFRSVRMFFYLAF

Query:  IASGTLGGLIATTQLLAALANPSRAEEVPEILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGPE
        IASGTLGGLIATTQLLAALAN SRAEEVP+IL GLGIDFGAVA FAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVI ISTLRGIARLVICAGPE
Subjt:  IASGTLGGLIATTQLLAALANPSRAEEVPEILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGPE

Query:  SFVMEAFKSSEPFTERLLERGVLVVPLATDVSSLNFEFDEREEVKDITTKRKRLWRLTPVFMPEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRGSGVG
        S +MEAFK+SEPFTERLLERGVLV+P ATD SSLNFEFDEREE+KDITTKRKRLWRLTPV+M +WSAWLD+QKKLAGVSSDSPVYLSLRMDGRVRGSGVG
Subjt:  SFVMEAFKSSEPFTERLLERGVLVVPLATDVSSLNFEFDEREEVKDITTKRKRLWRLTPVFMPEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRGSGVG

Query:  YPPWNALVAQLPPVKGLWSGLLDGMDGRVL
        YPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Subjt:  YPPWNALVAQLPPVKGLWSGLLDGMDGRVL

SwissProt top hits

e value

%identity

Alignment

Q9SRY4 Protein LOW PSII ACCUMULATION 1, chloroplastic

5.5e-32

32.45

Show/hide

Query:  KIRSEVLSPFRSVRMFFYLAFIASGTLGGLIATTQLLAALANPSRAEEVPEILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQN
        K+ SEV +PFR VR FFY AF A+  +       +L+ A+     A  + E      I+ G + +   L+  EN  +  Q+ +++R+E+LS L LR+  N
Subjt:  KIRSEVLSPFRSVRMFFYLAFIASGTLGGLIATTQLLAALANPSRAEEVPEILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQN

Query:  KVIPISTLRGIARLVICAGPESFVMEAFKSSEPFTERLLERGVLVVPL---------------------ATDVSSLNFEFDEREE--VKDITTKRKRLWR
        +V+ +  LR   R VI AG +  V  A + ++ F   LL RGVL+VP+                     AT + S+  +FD R +  V     K +  ++
Subjt:  KVIPISTLRGIARLVICAGPESFVMEAFKSSEPFTERLLERGVLVVPL---------------------ATDVSSLNFEFDEREE--VKDITTKRKRLWR

Query:  LTPVFMPEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGL
           V   EW  W+ +Q+   GV+    VY+ LR+DGRVR SG G P W  +  +LPP+  + S L
Subjt:  LTPVFMPEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGL

Arabidopsis top hits

e value

%identity

Alignment

AT1G02910.1 tetratricopeptide repeat (TPR)-containing protein

3.9e-33

32.45

Show/hide

Query:  KIRSEVLSPFRSVRMFFYLAFIASGTLGGLIATTQLLAALANPSRAEEVPEILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQN
        K+ SEV +PFR VR FFY AF A+  +       +L+ A+     A  + E      I+ G + +   L+  EN  +  Q+ +++R+E+LS L LR+  N
Subjt:  KIRSEVLSPFRSVRMFFYLAFIASGTLGGLIATTQLLAALANPSRAEEVPEILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQN

Query:  KVIPISTLRGIARLVICAGPESFVMEAFKSSEPFTERLLERGVLVVPL---------------------ATDVSSLNFEFDEREE--VKDITTKRKRLWR
        +V+ +  LR   R VI AG +  V  A + ++ F   LL RGVL+VP+                     AT + S+  +FD R +  V     K +  ++
Subjt:  KVIPISTLRGIARLVICAGPESFVMEAFKSSEPFTERLLERGVLVVPL---------------------ATDVSSLNFEFDEREE--VKDITTKRKRLWR

Query:  LTPVFMPEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGL
           V   EW  W+ +Q+   GV+    VY+ LR+DGRVR SG G P W  +  +LPP+  + S L
Subjt:  LTPVFMPEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGL

AT4G28740.1 FUNCTIONS IN: molecular_function unknown

2.0e-106

62.5

Show/hide

Query:  HFPRYRSHNAHNFKFYRRICCHVHRKTVSFTFGPNLAESLRSLQHTRPNLANLTCSAADKP-EISSTAKIRSEVLSPFRSVRMFFYLAFIASGTLGGLIA
        H  +   + A     +RRI  H HR+ + F+   +     R  Q   P   N  C AAD+P EIS+ A+IRSEVLSPFRSVRMFFYLAFIASG+LGGLIA
Subjt:  HFPRYRSHNAHNFKFYRRICCHVHRKTVSFTFGPNLAESLRSLQHTRPNLANLTCSAADKP-EISSTAKIRSEVLSPFRSVRMFFYLAFIASGTLGGLIA

Query:  TTQLLAALANPSRAEEVPEILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQ-NKVIPISTLRGIARLVICAGPESFVMEAFKSS
        T++L+ ALANP+R+ EV EI+KGLG+D GA +LFAFLYF EN  KNAQ+ARLSREE+L  LK+RV++ NKVI +  LRG+ARLVICAGP  F+ EAFK S
Subjt:  TTQLLAALANPSRAEEVPEILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQ-NKVIPISTLRGIARLVICAGPESFVMEAFKSS

Query:  EPFTERLLERGVLVVPLATDVSSLNFEFDEREEV-KDITTKRKRLWRLTPVFMPEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVA
        + +T+ L+ERGV+VV  ATD +S   EFDE +   ++++ +RK+LWR+TPVF+PEW  WL+EQKKLA VSSDSPVYLSLR+DGRVR SGVGYPPW A VA
Subjt:  EPFTERLLERGVLVVPLATDVSSLNFEFDEREEV-KDITTKRKRLWRLTPVFMPEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVA

Query:  QLPPVKGLWSGLLDGMDGRV
        QLPPVKG+W+GLLDGMDGRV
Subjt:  QLPPVKGLWSGLLDGMDGRV

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGTGGTTTCCTCCTGCAACAACTTATCTCGACCTCCACATTTTCCTCGCTACCGCAGCCATAACGCTCACAATTTCAAATTCTATCGCCGTATCTGCTGCCATGTTCA
TCGGAAGACGGTCTCGTTTACTTTTGGCCCTAATCTAGCAGAGTCGCTTCGTTCTCTTCAGCACACGAGACCGAATTTAGCTAACTTAACTTGCTCCGCTGCTGATAAAC
CGGAAATCAGTTCCACAGCCAAGATAAGAAGTGAAGTGCTCTCTCCTTTTCGGTCGGTTCGAATGTTCTTTTATCTCGCTTTCATTGCCAGTGGTACATTGGGAGGACTG
ATAGCAACCACTCAATTGCTTGCTGCATTGGCAAATCCATCAAGAGCTGAAGAAGTTCCTGAAATTCTAAAAGGACTTGGGATAGACTTTGGAGCCGTAGCTCTTTTTGC
ATTTCTTTATTTCAGAGAGAACAATGCAAAAAATGCTCAGTTGGCAAGATTGTCAAGAGAAGAAAGCCTTTCCAATTTAAAGCTTCGAGTGGACCAAAACAAAGTTATTC
CTATCAGCACTCTGCGTGGGATTGCTCGTCTGGTTATTTGTGCTGGCCCTGAATCCTTTGTCATGGAAGCTTTTAAATCAAGTGAGCCTTTCACTGAACGACTTCTTGAG
CGGGGCGTGTTAGTTGTACCCTTGGCCACGGATGTCAGTTCACTGAATTTTGAGTTTGATGAACGTGAAGAGGTGAAGGATATCACCACCAAAAGAAAAAGACTGTGGCG
CTTGACTCCAGTTTTCATGCCTGAGTGGTCGGCGTGGTTAGATGAACAAAAGAAGTTGGCTGGAGTCTCCTCTGATTCGCCTGTGTATCTATCTCTGCGAATGGATGGTC
GTGTTCGTGGTAGCGGTGTTGGCTATCCTCCATGGAACGCTCTTGTTGCACAATTACCACCTGTAAAAGGACTATGGTCAGGTCTTCTAGATGGAATGGATGGGAGAGTT
CTTTGA

mRNA sequence

Show/hide mRNA sequence

TCATTTTTCTCGTTACCCCACGGCCCACAGGCACTTCAACCTTTGTCAATCGTCATCTGAGCTTTATGGTGCGGCAAATTCTGGGTATCGTGGCGCCATCCAAACCATCC
CTCGAAATTTGCTTCCATTGATTGACAAACTGAGAAACTACCGCAGATGTCGAGTGTCAGTTTCTCTTTCTCGAGTGGTCAATCATGGTGGTTTCCTCCTGCAACAACTT
ATCTCGACCTCCACATTTTCCTCGCTACCGCAGCCATAACGCTCACAATTTCAAATTCTATCGCCGTATCTGCTGCCATGTTCATCGGAAGACGGTCTCGTTTACTTTTG
GCCCTAATCTAGCAGAGTCGCTTCGTTCTCTTCAGCACACGAGACCGAATTTAGCTAACTTAACTTGCTCCGCTGCTGATAAACCGGAAATCAGTTCCACAGCCAAGATA
AGAAGTGAAGTGCTCTCTCCTTTTCGGTCGGTTCGAATGTTCTTTTATCTCGCTTTCATTGCCAGTGGTACATTGGGAGGACTGATAGCAACCACTCAATTGCTTGCTGC
ATTGGCAAATCCATCAAGAGCTGAAGAAGTTCCTGAAATTCTAAAAGGACTTGGGATAGACTTTGGAGCCGTAGCTCTTTTTGCATTTCTTTATTTCAGAGAGAACAATG
CAAAAAATGCTCAGTTGGCAAGATTGTCAAGAGAAGAAAGCCTTTCCAATTTAAAGCTTCGAGTGGACCAAAACAAAGTTATTCCTATCAGCACTCTGCGTGGGATTGCT
CGTCTGGTTATTTGTGCTGGCCCTGAATCCTTTGTCATGGAAGCTTTTAAATCAAGTGAGCCTTTCACTGAACGACTTCTTGAGCGGGGCGTGTTAGTTGTACCCTTGGC
CACGGATGTCAGTTCACTGAATTTTGAGTTTGATGAACGTGAAGAGGTGAAGGATATCACCACCAAAAGAAAAAGACTGTGGCGCTTGACTCCAGTTTTCATGCCTGAGT
GGTCGGCGTGGTTAGATGAACAAAAGAAGTTGGCTGGAGTCTCCTCTGATTCGCCTGTGTATCTATCTCTGCGAATGGATGGTCGTGTTCGTGGTAGCGGTGTTGGCTAT
CCTCCATGGAACGCTCTTGTTGCACAATTACCACCTGTAAAAGGACTATGGTCAGGTCTTCTAGATGGAATGGATGGGAGAGTTCTTTGAAGAAAACACTTCTCTTCTTC
GAAATACTCGGCAATGGAGCTTCTCAAAACCTTGACCATGGAGGACGCTGCCACTGTAAAAGCTCCAACATTATTGTCTATCATGCTGGACTGCCTAAGAAATGGAACTG
AATCTCGTCACAGCAGAAATACAGGTTTTCATAAAGAGATAAAAGGAGAGATTTAGCTTATTTGACATCATGAATTTCATTTTTGATCTAGAATCCAACATTCCTAGTTA
TTAGTTATTATTTCTCAGTAATTATATTGTATAGCTGATATTAATTATATTTGTATAGCTGAAATTTGCTAATTGTCAGTTGAATGTGTATTTAAGTGCACTCAGTAATG
GTAATGAACCGATTACACATTTTCATTCAA

Protein sequence

Show/hide protein sequence

MVVSSCNNLSRPPHFPRYRSHNAHNFKFYRRICCHVHRKTVSFTFGPNLAESLRSLQHTRPNLANLTCSAADKPEISSTAKIRSEVLSPFRSVRMFFYLAFIASGTLGGL
IATTQLLAALANPSRAEEVPEILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGPESFVMEAFKSSEPFTERLLE
RGVLVVPLATDVSSLNFEFDEREEVKDITTKRKRLWRLTPVFMPEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRV
L

Tan0006999 (gene) of Snake gourd v1 genome