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Tan0007079 (gene) of Snake gourd v1 genome

Gene IDTan0007079
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionDNA/RNA polymerases superfamily protein
Genome locationLG02:52459300..52464960
RNA-Seq ExpressionTan0007079
SyntenyTan0007079
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0054814.1 reverse transcriptase [Cucumis melo var. makuwa]8.1e-0443.94Show/hide
Query:  PTQDQSQWGSSAPRVQIGARIKRHANSSQDTIVEEKSVVKPSCGASTTSSFQGREQRRFTPGVNVS
        P    ++W + +  V+   R+       + +I EEKS V+ S G STTS F+GREQRRFTPG+N+S
Subjt:  PTQDQSQWGSSAPRVQIGARIKRHANSSQDTIVEEKSVVKPSCGASTTSSFQGREQRRFTPGVNVS

KAA0061627.1 putative polyprotein [Cucumis melo var. makuwa]8.1e-0445.45Show/hide
Query:  PTQDQSQWGSSAPRVQIGARIKRHANSSQDTIVEEKSVVKPSCGASTTSSFQGREQRRFTPGVNVS
        P    ++W + +  V+   R+       Q +I EEKS V+ S G ST S F+GREQRRFTPGVN+S
Subjt:  PTQDQSQWGSSAPRVQIGARIKRHANSSQDTIVEEKSVVKPSCGASTTSSFQGREQRRFTPGVNVS

TYK00849.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.8e-0471.43Show/hide
Query:  IVEEKSVVKPSCGASTTSSFQGREQRRFTPGVNVS
        I EEKS V+ SCG ST+S F+GREQRRFTPG+N+S
Subjt:  IVEEKSVVKPSCGASTTSSFQGREQRRFTPGVNVS

TrEMBL top hitse value%identityAlignment
A0A5A7UI35 Reverse transcriptase3.9e-0443.94Show/hide
Query:  PTQDQSQWGSSAPRVQIGARIKRHANSSQDTIVEEKSVVKPSCGASTTSSFQGREQRRFTPGVNVS
        P    ++W + +  V+   R+       + +I EEKS V+ S G STTS F+GREQRRFTPG+N+S
Subjt:  PTQDQSQWGSSAPRVQIGARIKRHANSSQDTIVEEKSVVKPSCGASTTSSFQGREQRRFTPGVNVS

A0A5A7UT17 CCHC-type domain-containing protein5.1e-0458.33Show/hide
Query:  ARIKRHANSSQDTIVEEKSVVKPSCGASTTSSFQGREQRRFTPGVNVS
        A++   A   + +I+EEKS +  S G STTS F+GREQRRFTPGVNVS
Subjt:  ARIKRHANSSQDTIVEEKSVVKPSCGASTTSSFQGREQRRFTPGVNVS

A0A5A7V411 Putative polyprotein3.9e-0445.45Show/hide
Query:  PTQDQSQWGSSAPRVQIGARIKRHANSSQDTIVEEKSVVKPSCGASTTSSFQGREQRRFTPGVNVS
        P    ++W + +  V+   R+       Q +I EEKS V+ S G ST S F+GREQRRFTPGVN+S
Subjt:  PTQDQSQWGSSAPRVQIGARIKRHANSSQDTIVEEKSVVKPSCGASTTSSFQGREQRRFTPGVNVS

A0A5D3BRY3 DNA/RNA polymerases superfamily protein1.4e-0471.43Show/hide
Query:  IVEEKSVVKPSCGASTTSSFQGREQRRFTPGVNVS
        I EEKS V+ SCG ST+S F+GREQRRFTPG+N+S
Subjt:  IVEEKSVVKPSCGASTTSSFQGREQRRFTPGVNVS

A0A5D3BTP3 Reverse transcriptase5.1e-0446.97Show/hide
Query:  PTQDQSQWGSSAPRVQIGARIKRHANSSQDTIVEEKSVVKPSCGASTTSSFQGREQRRFTPGVNVS
        P    ++W + +  V+   R+K+       +IVEEKS ++ S G STTS  +GREQRRFTPGVNVS
Subjt:  PTQDQSQWGSSAPRVQIGARIKRHANSSQDTIVEEKSVVKPSCGASTTSSFQGREQRRFTPGVNVS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACCTAAGAGACCCTATCCATTTCTGGAGTTTGAGTTGTTCTGAATTCCATGTTACATCCCTCCGAATGGATGGTGCTACTTCGGGCAACCTGCAGGCGCATTATGG
GAATCTCACGGACGGGACGCAGGATCCTACCCAAGATCAATCTCAGTGGGGATCTAGTGCCCCGAGAGTCCAGATAGGGGCCAGAATTAAACGACATGCTAATTCCTCAC
AGGATACTATAGTAGAGGAGAAGTCAGTAGTGAAGCCTAGTTGTGGGGCTTCGACAACCAGCAGTTTCCAAGGTCGTGAGCAGCGGAGGTTCACACCTGGAGTAAATGTT
TCCAAGTCAATAAGACTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGACCTAAGAGACCCTATCCATTTCTGGAGTTTGAGTTGTTCTGAATTCCATGTTACATCCCTCCGAATGGATGGTGCTACTTCGGGCAACCTGCAGGCGCATTATGG
GAATCTCACGGACGGGACGCAGGATCCTACCCAAGATCAATCTCAGTGGGGATCTAGTGCCCCGAGAGTCCAGATAGGGGCCAGAATTAAACGACATGCTAATTCCTCAC
AGGATACTATAGTAGAGGAGAAGTCAGTAGTGAAGCCTAGTTGTGGGGCTTCGACAACCAGCAGTTTCCAAGGTCGTGAGCAGCGGAGGTTCACACCTGGAGTAAATGTT
TCCAAGTCAATAAGACTTTAA
Protein sequenceShow/hide protein sequence
MDLRDPIHFWSLSCSEFHVTSLRMDGATSGNLQAHYGNLTDGTQDPTQDQSQWGSSAPRVQIGARIKRHANSSQDTIVEEKSVVKPSCGASTTSSFQGREQRRFTPGVNV
SKSIRL