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Tan0007134 (gene) of Snake gourd v1 genome

Gene IDTan0007134
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionGag/pol protein
Genome locationLG01:72677244..72677564
RNA-Seq ExpressionTan0007134
SyntenyTan0007134
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADJ18449.1 gag/pol protein, partial [Bryonia dioica]6.9e-3467.92Show/hide
Query:  MSSSIIALLISDRLTGENFTTWKSNLNTILVVDDLRFVLTEECPQIPARNAPQSVNEAYDCWIKANDKAKVYILASVSEVLAKKHEGMVSTREIMSSLQE
        M++SI+ LL S++L G+N++ WKSNLNTILVVDDLRFVLTEECPQ PA NA ++V EAYD W+KANDKA+VYILAS+++VLAKKH+ + + + IM SL+E
Subjt:  MSSSIIALLISDRLTGENFTTWKSNLNTILVVDDLRFVLTEECPQIPARNAPQSVNEAYDCWIKANDKAKVYILASVSEVLAKKHEGMVSTREIMSSLQE

Query:  MFGQPS
        MFGQPS
Subjt:  MFGQPS

XP_022157844.1 uncharacterized protein LOC111024457 [Momordica charantia]9.0e-3467.92Show/hide
Query:  MSSSIIALLISDRLTGENFTTWKSNLNTILVVDDLRFVLTEECPQIPARNAPQSVNEAYDCWIKANDKAKVYILASVSEVLAKKHEGMVSTREIMSSLQE
        M+SSI+ LL S++L G N++TWK+NLNTILVVDDLRFVLTEECPQ PA NA ++V EA+D W+KANDKA+VYILAS+++VLAKKHE +++ +EIM SL+ 
Subjt:  MSSSIIALLISDRLTGENFTTWKSNLNTILVVDDLRFVLTEECPQIPARNAPQSVNEAYDCWIKANDKAKVYILASVSEVLAKKHEGMVSTREIMSSLQE

Query:  MFGQPS
        MFG+PS
Subjt:  MFGQPS

XP_022158197.1 uncharacterized protein LOC111024734 [Momordica charantia]1.8e-3471.7Show/hide
Query:  MSSSIIALLISDRLTGENFTTWKSNLNTILVVDDLRFVLTEECPQIPARNAPQSVNEAYDCWIKANDKAKVYILASVSEVLAKKHEGMVSTREIMSSLQE
        MS+SIIALL + +L GEN+  WKSNLNTILV+DDLRFVL E+CPQ P  NA  +V  AYD WIK+NDKAKVYILAS+S+VLAKKHE  V+T+EIM SLQ 
Subjt:  MSSSIIALLISDRLTGENFTTWKSNLNTILVVDDLRFVLTEECPQIPARNAPQSVNEAYDCWIKANDKAKVYILASVSEVLAKKHEGMVSTREIMSSLQE

Query:  MFGQPS
        MFGQPS
Subjt:  MFGQPS

XP_022158568.1 uncharacterized protein LOC111025021 [Momordica charantia]4.0e-3469.81Show/hide
Query:  MSSSIIALLISDRLTGENFTTWKSNLNTILVVDDLRFVLTEECPQIPARNAPQSVNEAYDCWIKANDKAKVYILASVSEVLAKKHEGMVSTREIMSSLQE
        MS+S I LL SD+L G+N+  WKSNLNTILV+DDLRFVLTEECP  PA NA ++V +AYD W+KAN+KA+VYILAS+SEVL+KKHE + +TREIM SLQ 
Subjt:  MSSSIIALLISDRLTGENFTTWKSNLNTILVVDDLRFVLTEECPQIPARNAPQSVNEAYDCWIKANDKAKVYILASVSEVLAKKHEGMVSTREIMSSLQE

Query:  MFGQPS
        +FGQPS
Subjt:  MFGQPS

XP_038882358.1 uncharacterized protein LOC120073622 [Benincasa hispida]3.1e-3467.92Show/hide
Query:  MSSSIIALLISDRLTGENFTTWKSNLNTILVVDDLRFVLTEECPQIPARNAPQSVNEAYDCWIKANDKAKVYILASVSEVLAKKHEGMVSTREIMSSLQE
        M+SSII LL S++L G+N++ WKSNLNTILVVDDLRFVLTEECPQ P  NA ++V EAYD W+KAN+KA++YILAS+S+VLAKKHE + + +EI+ SL+E
Subjt:  MSSSIIALLISDRLTGENFTTWKSNLNTILVVDDLRFVLTEECPQIPARNAPQSVNEAYDCWIKANDKAKVYILASVSEVLAKKHEGMVSTREIMSSLQE

Query:  MFGQPS
        +FGQPS
Subjt:  MFGQPS

TrEMBL top hitse value%identityAlignment
A0A6J1DUZ9 uncharacterized protein LOC1110242949.7e-3466.98Show/hide
Query:  MSSSIIALLISDRLTGENFTTWKSNLNTILVVDDLRFVLTEECPQIPARNAPQSVNEAYDCWIKANDKAKVYILASVSEVLAKKHEGMVSTREIMSSLQE
        M+SSI+ LL S++L G N++TWK+NLNTILVVDDL+FVLTEECPQ PA NA ++V EA+D W+KANDKA+VYILAS+++VLAKKHE +++ +EIM SL+ 
Subjt:  MSSSIIALLISDRLTGENFTTWKSNLNTILVVDDLRFVLTEECPQIPARNAPQSVNEAYDCWIKANDKAKVYILASVSEVLAKKHEGMVSTREIMSSLQE

Query:  MFGQPS
        MFG+PS
Subjt:  MFGQPS

A0A6J1DWG6 uncharacterized protein LOC1110250212.0e-3469.81Show/hide
Query:  MSSSIIALLISDRLTGENFTTWKSNLNTILVVDDLRFVLTEECPQIPARNAPQSVNEAYDCWIKANDKAKVYILASVSEVLAKKHEGMVSTREIMSSLQE
        MS+S I LL SD+L G+N+  WKSNLNTILV+DDLRFVLTEECP  PA NA ++V +AYD W+KAN+KA+VYILAS+SEVL+KKHE + +TREIM SLQ 
Subjt:  MSSSIIALLISDRLTGENFTTWKSNLNTILVVDDLRFVLTEECPQIPARNAPQSVNEAYDCWIKANDKAKVYILASVSEVLAKKHEGMVSTREIMSSLQE

Query:  MFGQPS
        +FGQPS
Subjt:  MFGQPS

A0A6J1DWL0 uncharacterized protein LOC1110247348.8e-3571.7Show/hide
Query:  MSSSIIALLISDRLTGENFTTWKSNLNTILVVDDLRFVLTEECPQIPARNAPQSVNEAYDCWIKANDKAKVYILASVSEVLAKKHEGMVSTREIMSSLQE
        MS+SIIALL + +L GEN+  WKSNLNTILV+DDLRFVL E+CPQ P  NA  +V  AYD WIK+NDKAKVYILAS+S+VLAKKHE  V+T+EIM SLQ 
Subjt:  MSSSIIALLISDRLTGENFTTWKSNLNTILVVDDLRFVLTEECPQIPARNAPQSVNEAYDCWIKANDKAKVYILASVSEVLAKKHEGMVSTREIMSSLQE

Query:  MFGQPS
        MFGQPS
Subjt:  MFGQPS

A0A6J1DXQ5 uncharacterized protein LOC1110244574.4e-3467.92Show/hide
Query:  MSSSIIALLISDRLTGENFTTWKSNLNTILVVDDLRFVLTEECPQIPARNAPQSVNEAYDCWIKANDKAKVYILASVSEVLAKKHEGMVSTREIMSSLQE
        M+SSI+ LL S++L G N++TWK+NLNTILVVDDLRFVLTEECPQ PA NA ++V EA+D W+KANDKA+VYILAS+++VLAKKHE +++ +EIM SL+ 
Subjt:  MSSSIIALLISDRLTGENFTTWKSNLNTILVVDDLRFVLTEECPQIPARNAPQSVNEAYDCWIKANDKAKVYILASVSEVLAKKHEGMVSTREIMSSLQE

Query:  MFGQPS
        MFG+PS
Subjt:  MFGQPS

E2GK51 Gag/pol protein (Fragment)3.3e-3467.92Show/hide
Query:  MSSSIIALLISDRLTGENFTTWKSNLNTILVVDDLRFVLTEECPQIPARNAPQSVNEAYDCWIKANDKAKVYILASVSEVLAKKHEGMVSTREIMSSLQE
        M++SI+ LL S++L G+N++ WKSNLNTILVVDDLRFVLTEECPQ PA NA ++V EAYD W+KANDKA+VYILAS+++VLAKKH+ + + + IM SL+E
Subjt:  MSSSIIALLISDRLTGENFTTWKSNLNTILVVDDLRFVLTEECPQIPARNAPQSVNEAYDCWIKANDKAKVYILASVSEVLAKKHEGMVSTREIMSSLQE

Query:  MFGQPS
        MFGQPS
Subjt:  MFGQPS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGTCCTCAATAATAGCCTTACTCATAAGCGATCGTTTAACTGGTGAGAATTTTACTACGTGGAAGTCCAACTTGAATACGATTCTTGTTGTTGACGACCTACGATT
TGTACTAACTGAGGAATGTCCTCAGATCCCTGCTCGTAACGCTCCTCAATCTGTTAATGAGGCGTACGACTGCTGGATCAAGGCCAATGATAAGGCCAAGGTCTATATTT
TGGCTAGTGTTTCTGAAGTTCTAGCCAAAAAGCACGAGGGCATGGTCTCGACTCGTGAGATCATGAGTTCACTGCAGGAAATGTTTGGACAACCGTCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCGTCCTCAATAATAGCCTTACTCATAAGCGATCGTTTAACTGGTGAGAATTTTACTACGTGGAAGTCCAACTTGAATACGATTCTTGTTGTTGACGACCTACGATT
TGTACTAACTGAGGAATGTCCTCAGATCCCTGCTCGTAACGCTCCTCAATCTGTTAATGAGGCGTACGACTGCTGGATCAAGGCCAATGATAAGGCCAAGGTCTATATTT
TGGCTAGTGTTTCTGAAGTTCTAGCCAAAAAGCACGAGGGCATGGTCTCGACTCGTGAGATCATGAGTTCACTGCAGGAAATGTTTGGACAACCGTCTTGA
Protein sequenceShow/hide protein sequence
MSSSIIALLISDRLTGENFTTWKSNLNTILVVDDLRFVLTEECPQIPARNAPQSVNEAYDCWIKANDKAKVYILASVSEVLAKKHEGMVSTREIMSSLQEMFGQPS