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Tan0007183 (gene) of Snake gourd v1 genome

Gene IDTan0007183
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRetrotransposon protein, putative, unclassified
Genome locationLG11:44298458..44301080
RNA-Seq ExpressionTan0007183
SyntenyTan0007183
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAH66131.1 OSIGBa0135L04.5 [Oryza sativa]1.5e-0935.51Show/hide
Query:  LDRKGLKRPVLVNEILNGKRVSDMLYDDGSWKEEVIKEGFCNLDFEDIINTPLGPKGFKDEIIWGKDPKGWFSIKSAYHLATNHGPNPSSFGSDVREGTK
        L R   +RP+ V      K V+D++  DG+W E+V+K  F  +D E I+   L  +  +D + W  D  G FS++SAY LA       +  GS   E +K
Subjt:  LDRKGLKRPVLVNEILNGKRVSDMLYDDGSWKEEVIKEGFCNLDFEDIINTPLGPKGFKDEIIWGKDPKGWFSIKSAYHLATNHGPNPSSFGSDVREGTK

Query:  FWNQLWK
         WN +WK
Subjt:  FWNQLWK

KAA0031740.1 retrotransposon protein, putative, unclassified [Cucumis melo var. makuwa]6.1e-1136.21Show/hide
Query:  LDRKGLKRPVLVNEILNGKRVSDMLYDDGSWKEEVIKEGFCNLDFEDIINTPLGPKGFKDEIIWGKDPKGWFSIKSAYHLATNHGPNPSSFGSDVREGTK
        + ++GL   VLV E L   RV +++  DG+W EE+I   F    +  IIN PL     KD+I WG DPK  F +KS Y +A +   +  +  S+ +   K
Subjt:  LDRKGLKRPVLVNEILNGKRVSDMLYDDGSWKEEVIKEGFCNLDFEDIINTPLGPKGFKDEIIWGKDPKGWFSIKSAYHLATNHGPNPSSFGSDVREGTK

Query:  FWNQLWKAKSLPGAKM
            +W +K+LP AK+
Subjt:  FWNQLWKAKSLPGAKM

XP_025877668.1 uncharacterized protein LOC4351546 [Oryza sativa Japonica Group]3.4e-0934.68Show/hide
Query:  RVGNATR------EHLDRKGLKRPVLVNEILNGKRVSDMLYDDGSWKEEVIKEGFCNLDFEDIINTPLGPKGFKDEIIWGKDPKGWFSIKSAYHLATNHG
        RVGN           L R   +RP+        K VSD++ +DGSW    I + F NLD E I+N  +  +  +D I W  D  G FS++SAY LA    
Subjt:  RVGNATR------EHLDRKGLKRPVLVNEILNGKRVSDMLYDDGSWKEEVIKEGFCNLDFEDIINTPLGPKGFKDEIIWGKDPKGWFSIKSAYHLATNHG

Query:  PNPSSFGSDVREGTKFWNQLWKAK
            S  S      K W  +WK K
Subjt:  PNPSSFGSDVREGTKFWNQLWKAK

XP_030502714.1 uncharacterized protein LOC115717884 [Cannabis sativa]8.8e-1035.42Show/hide
Query:  RVSDMLYDDGSWKEEVIKEGFCNLDFEDIINTPLGPKGFKDEIIWGKDPKGWFSIKSAYHLATNHGPNPSSFGSDVREGTKFWNQLWKAKSLPGAK
        ++S  + D G W    ++  F   D +DI+  P+     KD+IIW ++  G F++KSAYHLA +    PSS  S      KFWN++W +++ P  K
Subjt:  RVSDMLYDDGSWKEEVIKEGFCNLDFEDIINTPLGPKGFKDEIIWGKDPKGWFSIKSAYHLATNHGPNPSSFGSDVREGTKFWNQLWKAKSLPGAK

XP_030507775.1 uncharacterized protein LOC115722655 [Cannabis sativa]1.8e-1036.46Show/hide
Query:  RVSDMLYDDGSWKEEVIKEGFCNLDFEDIINTPLGPKGFKDEIIWGKDPKGWFSIKSAYHLATNHGPNPSSFGSDVREGTKFWNQLWKAKSLPGAK
        ++S  + D G W    +++ F   D +DI+N P+     KDE+IW +   G F++KSAYHLA ++   PS+  S      KFWN++W +K+ P  K
Subjt:  RVSDMLYDDGSWKEEVIKEGFCNLDFEDIINTPLGPKGFKDEIIWGKDPKGWFSIKSAYHLATNHGPNPSSFGSDVREGTKFWNQLWKAKSLPGAK

TrEMBL top hitse value%identityAlignment
A0A5A7SLW3 Retrotransposon protein, putative, unclassified3.0e-1136.21Show/hide
Query:  LDRKGLKRPVLVNEILNGKRVSDMLYDDGSWKEEVIKEGFCNLDFEDIINTPLGPKGFKDEIIWGKDPKGWFSIKSAYHLATNHGPNPSSFGSDVREGTK
        + ++GL   VLV E L   RV +++  DG+W EE+I   F    +  IIN PL     KD+I WG DPK  F +KS Y +A +   +  +  S+ +   K
Subjt:  LDRKGLKRPVLVNEILNGKRVSDMLYDDGSWKEEVIKEGFCNLDFEDIINTPLGPKGFKDEIIWGKDPKGWFSIKSAYHLATNHGPNPSSFGSDVREGTK

Query:  FWNQLWKAKSLPGAKM
            +W +K+LP AK+
Subjt:  FWNQLWKAKSLPGAKM

A0A803QDP2 Uncharacterized protein1.5e-1042.5Show/hide
Query:  IKEGFCNLDFEDIINTPLGPKGFKDEIIWGKDPKGWFSIKSAYHLATNHGPNPSSFGSDVREGTKFWNQLWKAKSLPGAK
        +++ F   D +DI+N P+     KDE+IW +D  G F++KSAYHLA +H   PS+  S V    KFWN++W +K+ P  K
Subjt:  IKEGFCNLDFEDIINTPLGPKGFKDEIIWGKDPKGWFSIKSAYHLATNHGPNPSSFGSDVREGTKFWNQLWKAKSLPGAK

B8BN96 Reverse transcriptase domain-containing protein1.6e-0934.68Show/hide
Query:  RVGNATR------EHLDRKGLKRPVLVNEILNGKRVSDMLYDDGSWKEEVIKEGFCNLDFEDIINTPLGPKGFKDEIIWGKDPKGWFSIKSAYHLATNHG
        RVGN           L R   +RP+        K VSD++ +DGSW    I + F NLD E I+N  +  +  +D I W  D  G FS++SAY LA    
Subjt:  RVGNATR------EHLDRKGLKRPVLVNEILNGKRVSDMLYDDGSWKEEVIKEGFCNLDFEDIINTPLGPKGFKDEIIWGKDPKGWFSIKSAYHLATNHG

Query:  PNPSSFGSDVREGTKFWNQLWKAK
            S  S      K W  +WK K
Subjt:  PNPSSFGSDVREGTKFWNQLWKAK

Q01M84 OSIGBa0135L04.5 protein7.3e-1035.51Show/hide
Query:  LDRKGLKRPVLVNEILNGKRVSDMLYDDGSWKEEVIKEGFCNLDFEDIINTPLGPKGFKDEIIWGKDPKGWFSIKSAYHLATNHGPNPSSFGSDVREGTK
        L R   +RP+ V      K V+D++  DG+W E+V+K  F  +D E I+   L  +  +D + W  D  G FS++SAY LA       +  GS   E +K
Subjt:  LDRKGLKRPVLVNEILNGKRVSDMLYDDGSWKEEVIKEGFCNLDFEDIINTPLGPKGFKDEIIWGKDPKGWFSIKSAYHLATNHGPNPSSFGSDVREGTK

Query:  FWNQLWK
         WN +WK
Subjt:  FWNQLWK

Q0IPZ9 Os12g0156200 protein1.6e-0934.68Show/hide
Query:  RVGNATR------EHLDRKGLKRPVLVNEILNGKRVSDMLYDDGSWKEEVIKEGFCNLDFEDIINTPLGPKGFKDEIIWGKDPKGWFSIKSAYHLATNHG
        RVGN           L R   +RP+        K VSD++ +DGSW    I + F NLD E I+N  +  +  +D I W  D  G FS++SAY LA    
Subjt:  RVGNATR------EHLDRKGLKRPVLVNEILNGKRVSDMLYDDGSWKEEVIKEGFCNLDFEDIINTPLGPKGFKDEIIWGKDPKGWFSIKSAYHLATNHG

Query:  PNPSSFGSDVREGTKFWNQLWKAK
            S  S      K W  +WK K
Subjt:  PNPSSFGSDVREGTKFWNQLWKAK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGATAAATATACGTGGAGGAAGAGTCGGTAACGCAACAAGGGAGCATCTTGACAGGAAAGGACTCAAAAGACCCGTCCTTGTTAATGAAATTTTGAATGGAAAAAG
AGTCTCAGACATGCTCTATGATGACGGGAGTTGGAAGGAGGAGGTAATCAAGGAAGGCTTTTGTAACTTGGACTTTGAGGACATTATAAATACCCCCTTAGGGCCCAAAG
GGTTTAAAGATGAAATCATTTGGGGAAAGGACCCAAAAGGGTGGTTCTCGATCAAAAGTGCGTACCATTTAGCTACTAATCATGGTCCCAATCCGTCTAGCTTTGGATCA
GATGTGAGGGAGGGCACTAAGTTCTGGAATCAACTTTGGAAAGCTAAGTCTCTCCCTGGAGCCAAGATGGGTGCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCGATAAATATACGTGGAGGAAGAGTCGGTAACGCAACAAGGGAGCATCTTGACAGGAAAGGACTCAAAAGACCCGTCCTTGTTAATGAAATTTTGAATGGAAAAAG
AGTCTCAGACATGCTCTATGATGACGGGAGTTGGAAGGAGGAGGTAATCAAGGAAGGCTTTTGTAACTTGGACTTTGAGGACATTATAAATACCCCCTTAGGGCCCAAAG
GGTTTAAAGATGAAATCATTTGGGGAAAGGACCCAAAAGGGTGGTTCTCGATCAAAAGTGCGTACCATTTAGCTACTAATCATGGTCCCAATCCGTCTAGCTTTGGATCA
GATGTGAGGGAGGGCACTAAGTTCTGGAATCAACTTTGGAAAGCTAAGTCTCTCCCTGGAGCCAAGATGGGTGCCTAG
Protein sequenceShow/hide protein sequence
MAINIRGGRVGNATREHLDRKGLKRPVLVNEILNGKRVSDMLYDDGSWKEEVIKEGFCNLDFEDIINTPLGPKGFKDEIIWGKDPKGWFSIKSAYHLATNHGPNPSSFGS
DVREGTKFWNQLWKAKSLPGAKMGA