; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0007263 (gene) of Snake gourd v1 genome

Gene IDTan0007263
OrganismTrichosanthes anguina (Snake gourd v1)
Description50S ribosomal protein L17
Genome locationLG08:74029650..74030000
RNA-Seq ExpressionTan0007263
SyntenyTan0007263
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR000456 - Ribosomal protein L17
IPR036373 - Ribosomal protein L17 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF3454769.1 hypothetical protein FNV43_RR05217 [Rhamnella rubrinervis]4.9e-5798.28Show/hide
Query:  MRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRARASAIRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRT
        MRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRARASA+RKYVDKM+TLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRT
Subjt:  MRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRARASAIRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRT

Query:  LPRRGDNAPMAYIELV
        LPRRGDNAPMAYIELV
Subjt:  LPRRGDNAPMAYIELV

OAY67274.1 50S ribosomal protein L17, chloroplastic [Ananas comosus]1.4e-5698.28Show/hide
Query:  MRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRARASAIRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRT
        MRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRARASA+RKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEV+DRYGERNGGYTRIIRT
Subjt:  MRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRARASAIRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRT

Query:  LPRRGDNAPMAYIELV
        LPRRGDNAPMAYIELV
Subjt:  LPRRGDNAPMAYIELV

PKU78105.1 50S ribosomal protein L17, chloroplastic [Dendrobium catenatum]4.9e-5799.14Show/hide
Query:  MRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRARASAIRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRT
        MRHGKRVPKLNRPPDQRRAL+RGLTTQLLKHGRIKTTRARASAIRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRT
Subjt:  MRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRARASAIRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRT

Query:  LPRRGDNAPMAYIELV
        LPRRGDNAPMAYIELV
Subjt:  LPRRGDNAPMAYIELV

XP_020591644.1 50S ribosomal protein L17, chloroplastic [Phalaenopsis equestris]4.9e-5799.14Show/hide
Query:  MRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRARASAIRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRT
        MRHGKRVPKLNRPPDQRRAL+RGLTTQLLKHGRIKTTRARASAIRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRT
Subjt:  MRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRARASAIRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRT

Query:  LPRRGDNAPMAYIELV
        LPRRGDNAPMAYIELV
Subjt:  LPRRGDNAPMAYIELV

XP_020689408.1 50S ribosomal protein L17, chloroplastic isoform X1 [Dendrobium catenatum]4.9e-5799.14Show/hide
Query:  MRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRARASAIRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRT
        MRHGKRVPKLNRPPDQRRAL+RGLTTQLLKHGRIKTTRARASAIRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRT
Subjt:  MRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRARASAIRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRT

Query:  LPRRGDNAPMAYIELV
        LPRRGDNAPMAYIELV
Subjt:  LPRRGDNAPMAYIELV

TrEMBL top hitse value%identityAlignment
A0A199UR97 50S ribosomal protein L17, chloroplastic6.8e-5798.28Show/hide
Query:  MRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRARASAIRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRT
        MRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRARASA+RKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEV+DRYGERNGGYTRIIRT
Subjt:  MRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRARASAIRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRT

Query:  LPRRGDNAPMAYIELV
        LPRRGDNAPMAYIELV
Subjt:  LPRRGDNAPMAYIELV

A0A1D1YZ95 50S ribosomal protein L17, chloroplastic5.2e-5797.41Show/hide
Query:  MRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRARASAIRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRT
        MRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRARASA+RKYVDKM+TLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRT
Subjt:  MRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRARASAIRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRT

Query:  LPRRGDNAPMAYIELV
        LPRRGDNAPMAYIEL+
Subjt:  LPRRGDNAPMAYIELV

A0A2I0WR08 50S ribosomal protein L17, chloroplastic2.4e-5799.14Show/hide
Query:  MRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRARASAIRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRT
        MRHGKRVPKLNRPPDQRRAL+RGLTTQLLKHGRIKTTRARASAIRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRT
Subjt:  MRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRARASAIRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRT

Query:  LPRRGDNAPMAYIELV
        LPRRGDNAPMAYIELV
Subjt:  LPRRGDNAPMAYIELV

A0A6P5HM25 uncharacterized protein LOC1097284306.8e-5798.28Show/hide
Query:  MRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRARASAIRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRT
        MRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRARASA+RKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEV+DRYGERNGGYTRIIRT
Subjt:  MRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRARASAIRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRT

Query:  LPRRGDNAPMAYIELV
        LPRRGDNAPMAYIELV
Subjt:  LPRRGDNAPMAYIELV

A0A6V7QSV5 Uncharacterized protein6.8e-5798.28Show/hide
Query:  MRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRARASAIRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRT
        MRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRARASA+RKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEV+DRYGERNGGYTRIIRT
Subjt:  MRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRARASAIRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRT

Query:  LPRRGDNAPMAYIELV
        LPRRGDNAPMAYIELV
Subjt:  LPRRGDNAPMAYIELV

SwissProt top hitse value%identityAlignment
B0C429 50S ribosomal protein L173.9e-4172.17Show/hide
Query:  MRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRARASAIRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRT
        MRH  RV KL +P DQR+ALLR L+TQL++HGR+ TT+ARA A+R  V+KMITLAKDGSL  RRQALG+IY+KQ+VHALF +V DRYG+RNGGYTRIIRT
Subjt:  MRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRARASAIRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRT

Query:  LPRRGDNAPMAYIEL
        + RRGDNA MA IEL
Subjt:  LPRRGDNAPMAYIEL

B1XJI3 50S ribosomal protein L171.3e-4168.97Show/hide
Query:  MRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRARASAIRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRT
        MRHG RVP+L RP DQR+ALLR LTTQL++HG++KTT+ARA A+R  VD+MITLAKDGSL  RR+ALG++Y+K +VHALFA+ +DRYG+R GGY+R++RT
Subjt:  MRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRARASAIRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRT

Query:  LPRRGDNAPMAYIELV
        + RRGDNA MA IELV
Subjt:  LPRRGDNAPMAYIELV

O80363 50S ribosomal protein L17, chloroplastic1.7e-5793.97Show/hide
Query:  MRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRARASAIRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRT
        MRHG++VPKLNRPPDQRRALLRGLTTQLLKHGRIKTT+ARA A+RKYVDKMIT+AKDGSLHKRRQALGFIYEKQIVHALFAEV DRYGERNGGYTRIIRT
Subjt:  MRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRARASAIRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRT

Query:  LPRRGDNAPMAYIELV
        LPRRGDNAPMAYIELV
Subjt:  LPRRGDNAPMAYIELV

P82194 50S ribosomal protein L17, chloroplastic2.0e-5387.93Show/hide
Query:  MRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRARASAIRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRT
        M+HG+++ +L+RP DQRRALLRGLTTQLLKHGRIKTTRA+ASA+RKYVDKMITLAK+GSLHKRRQALGFIYEKQIVHALFAEV +RYG+RNGGYTRIIRT
Subjt:  MRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRARASAIRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRT

Query:  LPRRGDNAPMAYIELV
        LPRRGDNAPMAYIELV
Subjt:  LPRRGDNAPMAYIELV

Q9M385 50S ribosomal protein L17, chloroplastic1.3e-5794.83Show/hide
Query:  MRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRARASAIRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRT
        MRHG+RVPKLNRPPDQR+ALLRGLTTQLLKHGRIKTTRARASA+RK+VDKMITLAKDGSLHKRRQALG+IYEKQIVHALFAEV DRYGERNGGYTRIIRT
Subjt:  MRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRARASAIRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRT

Query:  LPRRGDNAPMAYIELV
        LPRRGDNAPMAYIELV
Subjt:  LPRRGDNAPMAYIELV

Arabidopsis top hitse value%identityAlignment
AT3G54210.1 Ribosomal protein L17 family protein9.4e-5994.83Show/hide
Query:  MRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRARASAIRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRT
        MRHG+RVPKLNRPPDQR+ALLRGLTTQLLKHGRIKTTRARASA+RK+VDKMITLAKDGSLHKRRQALG+IYEKQIVHALFAEV DRYGERNGGYTRIIRT
Subjt:  MRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRARASAIRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRT

Query:  LPRRGDNAPMAYIELV
        LPRRGDNAPMAYIELV
Subjt:  LPRRGDNAPMAYIELV

AT5G09770.1 Ribosomal protein L17 family protein5.8e-2448.15Show/hide
Query:  KLNRPPDQRRALLRGLTTQLLKHGRIKTTRARASAIRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRTLPRRGDNA
        KL RP   R ++LR + +QL+KH RI+TT  +A  +R+  D MI L K+GSL   R+A GF+    ++H +F E+  RY +R GGYTR++RT  R GD A
Subjt:  KLNRPPDQRRALLRGLTTQLLKHGRIKTTRARASAIRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRTLPRRGDNA

Query:  PMAYIELV
        PMAYIE +
Subjt:  PMAYIELV

AT5G64650.1 Ribosomal protein L17 family protein2.9e-2347.22Show/hide
Query:  KLNRPPDQRRALLRGLTTQLLKHGRIKTTRARASAIRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRTLPRRGDNA
        KL RP   R ++LR + +QL++H RI+TT  +A  +R+  D MI L K+GSL   R+A GF+    ++H +F E+  RY +R GGYTR++RT  R GD A
Subjt:  KLNRPPDQRRALLRGLTTQLLKHGRIKTTRARASAIRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRTLPRRGDNA

Query:  PMAYIELV
        PMAYIE +
Subjt:  PMAYIELV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGACATGGCAAGCGGGTACCTAAGCTCAATAGGCCTCCTGACCAACGGCGTGCACTATTGCGAGGGCTCACCACCCAACTCCTTAAGCACGGTCGGATCAAAACCAC
TAGAGCAAGAGCAAGTGCTATACGTAAGTATGTTGACAAAATGATCACATTAGCAAAGGACGGTTCTTTGCATAAAAGGAGACAGGCTTTAGGCTTCATCTACGAAAAGC
AGATTGTTCACGCTTTATTTGCAGAAGTCCAAGATAGGTATGGGGAGAGAAATGGTGGATATACCAGAATCATAAGAACACTGCCTAGGCGAGGGGACAATGCGCCTATG
GCATACATCGAACTTGTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGACATGGCAAGCGGGTACCTAAGCTCAATAGGCCTCCTGACCAACGGCGTGCACTATTGCGAGGGCTCACCACCCAACTCCTTAAGCACGGTCGGATCAAAACCAC
TAGAGCAAGAGCAAGTGCTATACGTAAGTATGTTGACAAAATGATCACATTAGCAAAGGACGGTTCTTTGCATAAAAGGAGACAGGCTTTAGGCTTCATCTACGAAAAGC
AGATTGTTCACGCTTTATTTGCAGAAGTCCAAGATAGGTATGGGGAGAGAAATGGTGGATATACCAGAATCATAAGAACACTGCCTAGGCGAGGGGACAATGCGCCTATG
GCATACATCGAACTTGTCTGA
Protein sequenceShow/hide protein sequence
MRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRARASAIRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRTLPRRGDNAPM
AYIELV