CuGenDBv2

Gene ID	Tan0007282
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Reverse transcriptase domain-containing protein
Genome location	LG09:48689696..48692625
RNA-Seq Expression	Tan0007282
Synteny	Tan0007282
Gene Ontology terms	NA
InterPro domains	IPR036691 - Endonuclease/exonuclease/phosphatase superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAF4347816.1 hypothetical protein G4B88_012929 [Cannabis sativa]

1.3e-33

53.24

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Query:  SGGLLMLWKDSIQLSVVSYSKAHMDSTIKDRNGE-WRFTGFYGDPSVEKRHESWLLLERLSGLFDLPWLVGGDFNELLSAGEKNGGAPKSKKTMNSFGEC
        SGGLL+LW D  ++SV S++  H+D+ +K    E WRFTGFYG+P    R ESW LL RL  LFDLPW+ GGDFNE+LS  EK GG+ +S   M  F   
Subjt:  SGGLLMLWKDSIQLSVVSYSKAHMDSTIKDRNGE-WRFTGFYGDPSVEKRHESWLLLERLSGLFDLPWLVGGDFNELLSAGEKNGGAPKSKKTMNSFGEC

Query:  IFRCKLVDAGFKGDKFTW-RKSRGVDTTKERLDRYFLNQ
        + RC L D GF+G  FTW  K +G    +ERLDRYF NQ
Subjt:  IFRCKLVDAGFKGDKFTW-RKSRGVDTTKERLDRYFLNQ

KAF4351405.1 hypothetical protein F8388_001025, partial [Cannabis sativa]

1.0e-35

49.68

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Query:  MGRSGGLLMLWKDSIQLSVVSYSKAHMDSTIKDRN-GEWRFTGFYGDPSVEKRHESWLLLERLSGLFDLPWLVGGDFNELLSAGEKNGGAPKSKKTMNSF
        +G+SGGLL+LW D  ++SV S+S  H+D+ +K      WRFTGFYG+P    R +SW LL RL GLFDLPW+ GGDFNE+LS  EK GG  +S   ++ F
Subjt:  MGRSGGLLMLWKDSIQLSVVSYSKAHMDSTIKDRN-GEWRFTGFYGDPSVEKRHESWLLLERLSGLFDLPWLVGGDFNELLSAGEKNGGAPKSKKTMNSF

Query:  GECIFRCKLVDAGFKGDKFTW-RKSRGVDTTKERLDRYFLNQSLMNRVNKLRWRVGD
         + + +C LVD GF+G  FTW  K +GV   +ERLDRYF NQ   N    ++   GD
Subjt:  GECIFRCKLVDAGFKGDKFTW-RKSRGVDTTKERLDRYFLNQSLMNRVNKLRWRVGD

KAF4372682.1 hypothetical protein F8388_000849, partial [Cannabis sativa]

2.3e-35

49.68

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Query:  MGRSGGLLMLWKDSIQLSVVSYSKAHMDSTIKDRN-GEWRFTGFYGDPSVEKRHESWLLLERLSGLFDLPWLVGGDFNELLSAGEKNGGAPKSKKTMNSF
        +G+SGGLL+LW D  ++SV S+S  H+D+ +K      WRFTGFYG+P    R  SW LL RL GLFDLPW+ GGDFNE+LS  EK GG  +S   ++ F
Subjt:  MGRSGGLLMLWKDSIQLSVVSYSKAHMDSTIKDRN-GEWRFTGFYGDPSVEKRHESWLLLERLSGLFDLPWLVGGDFNELLSAGEKNGGAPKSKKTMNSF

Query:  GECIFRCKLVDAGFKGDKFTW-RKSRGVDTTKERLDRYFLNQSLMNRVNKLRWRVGD
         + + +C LVD GF+G  FTW  K +GV   +ERLDRYF NQ   N    ++   GD
Subjt:  GECIFRCKLVDAGFKGDKFTW-RKSRGVDTTKERLDRYFLNQSLMNRVNKLRWRVGD

KAF4381998.1 hypothetical protein G4B88_006630 [Cannabis sativa]

1.3e-33

53.24

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Query:  SGGLLMLWKDSIQLSVVSYSKAHMDSTIKDRNGE-WRFTGFYGDPSVEKRHESWLLLERLSGLFDLPWLVGGDFNELLSAGEKNGGAPKSKKTMNSFGEC
        SGGLL+LW D  ++SV S++  H+D+ +K    E WRFTGFYG+P    R ESW LL RL  LFDLPW+ GGDFNE+LS  EK GG+ +S   M  F   
Subjt:  SGGLLMLWKDSIQLSVVSYSKAHMDSTIKDRNGE-WRFTGFYGDPSVEKRHESWLLLERLSGLFDLPWLVGGDFNELLSAGEKNGGAPKSKKTMNSFGEC

Query:  IFRCKLVDAGFKGDKFTW-RKSRGVDTTKERLDRYFLNQ
        + RC L D GF+G  FTW  K +G    +ERLDRYF NQ
Subjt:  IFRCKLVDAGFKGDKFTW-RKSRGVDTTKERLDRYFLNQ

KAF4383622.1 hypothetical protein F8388_014122 [Cannabis sativa]

1.3e-33

53.24

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Query:  SGGLLMLWKDSIQLSVVSYSKAHMDSTIKDRNGE-WRFTGFYGDPSVEKRHESWLLLERLSGLFDLPWLVGGDFNELLSAGEKNGGAPKSKKTMNSFGEC
        SGGLL+LW D  ++SV S++  H+D+ +K    E WRFTGFYG+P    R ESW LL RL  LFDLPW+ GGDFNE+LS  EK GG+ +S   M  F   
Subjt:  SGGLLMLWKDSIQLSVVSYSKAHMDSTIKDRNGE-WRFTGFYGDPSVEKRHESWLLLERLSGLFDLPWLVGGDFNELLSAGEKNGGAPKSKKTMNSFGEC

Query:  IFRCKLVDAGFKGDKFTW-RKSRGVDTTKERLDRYFLNQ
        + RC L D GF+G  FTW  K +G    +ERLDRYF NQ
Subjt:  IFRCKLVDAGFKGDKFTW-RKSRGVDTTKERLDRYFLNQ

TrEMBL top hits

e value

%identity

Alignment

A0A7J6DPD3 CCHC-type domain-containing protein

6.1e-34

53.24

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Query:  SGGLLMLWKDSIQLSVVSYSKAHMDSTIKDRNGE-WRFTGFYGDPSVEKRHESWLLLERLSGLFDLPWLVGGDFNELLSAGEKNGGAPKSKKTMNSFGEC
        SGGLL+LW D  ++SV S++  H+D+ +K    E WRFTGFYG+P    R ESW LL RL  LFDLPW+ GGDFNE+LS  EK GG+ +S   M  F   
Subjt:  SGGLLMLWKDSIQLSVVSYSKAHMDSTIKDRNGE-WRFTGFYGDPSVEKRHESWLLLERLSGLFDLPWLVGGDFNELLSAGEKNGGAPKSKKTMNSFGEC

Query:  IFRCKLVDAGFKGDKFTW-RKSRGVDTTKERLDRYFLNQ
        + RC L D GF+G  FTW  K +G    +ERLDRYF NQ
Subjt:  IFRCKLVDAGFKGDKFTW-RKSRGVDTTKERLDRYFLNQ

A0A7J6DZ24 CCHC-type domain-containing protein

5.0e-36

49.68

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Query:  MGRSGGLLMLWKDSIQLSVVSYSKAHMDSTIKDRN-GEWRFTGFYGDPSVEKRHESWLLLERLSGLFDLPWLVGGDFNELLSAGEKNGGAPKSKKTMNSF
        +G+SGGLL+LW D  ++SV S+S  H+D+ +K      WRFTGFYG+P    R +SW LL RL GLFDLPW+ GGDFNE+LS  EK GG  +S   ++ F
Subjt:  MGRSGGLLMLWKDSIQLSVVSYSKAHMDSTIKDRN-GEWRFTGFYGDPSVEKRHESWLLLERLSGLFDLPWLVGGDFNELLSAGEKNGGAPKSKKTMNSF

Query:  GECIFRCKLVDAGFKGDKFTW-RKSRGVDTTKERLDRYFLNQSLMNRVNKLRWRVGD
         + + +C LVD GF+G  FTW  K +GV   +ERLDRYF NQ   N    ++   GD
Subjt:  GECIFRCKLVDAGFKGDKFTW-RKSRGVDTTKERLDRYFLNQSLMNRVNKLRWRVGD

A0A7J6FPV7 CCHC-type domain-containing protein

1.1e-35

49.68

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Query:  MGRSGGLLMLWKDSIQLSVVSYSKAHMDSTIKDRN-GEWRFTGFYGDPSVEKRHESWLLLERLSGLFDLPWLVGGDFNELLSAGEKNGGAPKSKKTMNSF
        +G+SGGLL+LW D  ++SV S+S  H+D+ +K      WRFTGFYG+P    R  SW LL RL GLFDLPW+ GGDFNE+LS  EK GG  +S   ++ F
Subjt:  MGRSGGLLMLWKDSIQLSVVSYSKAHMDSTIKDRN-GEWRFTGFYGDPSVEKRHESWLLLERLSGLFDLPWLVGGDFNELLSAGEKNGGAPKSKKTMNSF

Query:  GECIFRCKLVDAGFKGDKFTW-RKSRGVDTTKERLDRYFLNQSLMNRVNKLRWRVGD
         + + +C LVD GF+G  FTW  K +GV   +ERLDRYF NQ   N    ++   GD
Subjt:  GECIFRCKLVDAGFKGDKFTW-RKSRGVDTTKERLDRYFLNQSLMNRVNKLRWRVGD

A0A7J6GGL8 CCHC-type domain-containing protein

6.1e-34

53.24

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Query:  SGGLLMLWKDSIQLSVVSYSKAHMDSTIKDRNGE-WRFTGFYGDPSVEKRHESWLLLERLSGLFDLPWLVGGDFNELLSAGEKNGGAPKSKKTMNSFGEC
        SGGLL+LW D  ++SV S++  H+D+ +K    E WRFTGFYG+P    R ESW LL RL  LFDLPW+ GGDFNE+LS  EK GG+ +S   M  F   
Subjt:  SGGLLMLWKDSIQLSVVSYSKAHMDSTIKDRNGE-WRFTGFYGDPSVEKRHESWLLLERLSGLFDLPWLVGGDFNELLSAGEKNGGAPKSKKTMNSFGEC

Query:  IFRCKLVDAGFKGDKFTW-RKSRGVDTTKERLDRYFLNQ
        + RC L D GF+G  FTW  K +G    +ERLDRYF NQ
Subjt:  IFRCKLVDAGFKGDKFTW-RKSRGVDTTKERLDRYFLNQ

A0A7J6GL46 CCHC-type domain-containing protein

6.1e-34

53.24

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Query:  SGGLLMLWKDSIQLSVVSYSKAHMDSTIKDRNGE-WRFTGFYGDPSVEKRHESWLLLERLSGLFDLPWLVGGDFNELLSAGEKNGGAPKSKKTMNSFGEC
        SGGLL+LW D  ++SV S++  H+D+ +K    E WRFTGFYG+P    R ESW LL RL  LFDLPW+ GGDFNE+LS  EK GG+ +S   M  F   
Subjt:  SGGLLMLWKDSIQLSVVSYSKAHMDSTIKDRNGE-WRFTGFYGDPSVEKRHESWLLLERLSGLFDLPWLVGGDFNELLSAGEKNGGAPKSKKTMNSFGEC

Query:  IFRCKLVDAGFKGDKFTW-RKSRGVDTTKERLDRYFLNQ
        + RC L D GF+G  FTW  K +G    +ERLDRYF NQ
Subjt:  IFRCKLVDAGFKGDKFTW-RKSRGVDTTKERLDRYFLNQ

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G40390.1 DNAse I-like superfamily protein

1.7e-04

30.85

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Query:  KRHESWLLLERLSG---LFDLPWLVGGDFNELLSAGEKNGGAPK--SKKTMNSFGECIFRCKLVDAGFKGDKFTWRKSRGVDTTKERLDRYFLN
        +R   W  + RLS    L + PWLV GDFN++ S  E     P   S + +     C+    LVD   +G  +TW   +  +    +LDR  +N
Subjt:  KRHESWLLLERLSG---LFDLPWLVGGDFNELLSAGEKNGGAPK--SKKTMNSFGECIFRCKLVDAGFKGDKFTWRKSRGVDTTKERLDRYFLN

Sequences

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CDS sequence

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ATGGGAAGAAGTGGAGGCCTTTTGATGTTGTGGAAGGATAGCATCCAGCTCTCGGTGGTCTCTTACTCAAAGGCGCATATGGACTCTACTATTAAAGATCGTAATGGGGA
GTGGAGGTTTACAGGATTTTATGGGGATCCTTCGGTGGAAAAAAGACATGAGTCATGGCTCCTCCTTGAGCGGCTGAGTGGGTTGTTTGACCTTCCCTGGCTGGTGGGAG
GAGATTTTAATGAGCTCCTCTCGGCTGGAGAAAAAAATGGTGGAGCTCCTAAGAGCAAAAAGACTATGAACTCTTTTGGAGAGTGCATTTTCAGGTGTAAGTTGGTTGAT
GCTGGGTTCAAGGGAGATAAGTTCACGTGGAGAAAGAGCAGAGGTGTTGACACCACTAAGGAGCGCCTCGACAGGTATTTTCTAAACCAAAGCTTGATGAACCGGGTTAA
CAAGCTCAGATGGAGAGTTGGGGATGGTCGGTACATTGACATTGGTGATGACTCATGGATCGCTAGAAAGGGGATTAAGAGACCTATTCTCGCTAGTTATGATCTGGCCA
AAATAAGACTCTGTGAGTTGATAGGAAATGATGGGAGTTGGAAGGAGGAGGATGTTAGAGATGGTTTCACCCATCAAGATATTGATGATATATTAAACACTCCGATCGGC
CCTAGAGGTTCCAAGGACGAGATTATTTGGGGAGAGGACCCAAAAGGTCTCTTTTCGGTCAAAAGTGCTTATATTTTAGCCAAAAATCTTGCTTGA

mRNA sequence

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Protein sequence

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MGRSGGLLMLWKDSIQLSVVSYSKAHMDSTIKDRNGEWRFTGFYGDPSVEKRHESWLLLERLSGLFDLPWLVGGDFNELLSAGEKNGGAPKSKKTMNSFGECIFRCKLVD
AGFKGDKFTWRKSRGVDTTKERLDRYFLNQSLMNRVNKLRWRVGDGRYIDIGDDSWIARKGIKRPILASYDLAKIRLCELIGNDGSWKEEDVRDGFTHQDIDDILNTPIG
PRGSKDEIIWGEDPKGLFSVKSAYILAKNLA

Tan0007282 (gene) of Snake gourd v1 genome