; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0007345 (gene) of Snake gourd v1 genome

Gene IDTan0007345
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionPectin lyase-like superfamily protein
Genome locationLG02:3955543..3958414
RNA-Seq ExpressionTan0007345
SyntenyTan0007345
Gene Ontology termsGO:0005975 - carbohydrate metabolic process (biological process)
GO:0004650 - polygalacturonase activity (molecular function)
InterPro domainsIPR000743 - Glycoside hydrolase, family 28
IPR011050 - Pectin lyase fold/virulence factor
IPR012334 - Pectin lyase fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046190.1 exopolygalacturonase-like [Cucumis melo var. makuwa]8.4e-3441.3Show/hide
Query:  MGLRPNFVTLLPLLLLFASIAKGQS---IFDVTKYGAQPNADIT--------------------------------------------------------
        MGLR NF   L LL L AS  KGQS   +FDVT+YGA+PN DIT                                                        
Subjt:  MGLRPNFVTLLPLLLLFASIAKGQS---IFDVTKYGAQPNADIT--------------------------------------------------------

Query:  --------------------------------------------QNLKFSFITNSIVKDITSLDSKNFHINVLGCKNVTFQHVTIIAPEDSPNTDGIHLS
                                                      LKF+F+TNSIV+DITSLDSKNFHIN+LGCKN+TFQHVTI APEDSPNTDGIH+S
Subjt:  --------------------------------------------QNLKFSFITNSIVKDITSLDSKNFHINVLGCKNVTFQHVTIIAPEDSPNTDGIHLS

Query:  SSEEIYIMNTKISTGDDCISVGDKFQEVQI
        SSE+I I+NTKISTGDDC+SVGD  +++ I
Subjt:  SSEEIYIMNTKISTGDDCISVGDKFQEVQI

KAA0059167.1 exopolygalacturonase-like [Cucumis melo var. makuwa]5.4e-3364.96Show/hide
Query:  IAKGQSIFD-VTKYGAQPN--------ADITQNLKFSFITNSIVKDITSLDSKNFHINVLGCKNVTFQHVTIIAPEDSPNTDGIHLSSSEEIYIMNTKIS
        I  G  +FD   K G + N          +  NLKFSF+TNS VKDITSLDSKNFHIN+LGCKNVTFQHVTIIAP++SPNTDGIH+SSSEEIYI+++KI+
Subjt:  IAKGQSIFD-VTKYGAQPN--------ADITQNLKFSFITNSIVKDITSLDSKNFHINVLGCKNVTFQHVTIIAPEDSPNTDGIHLSSSEEIYIMNTKIS

Query:  TGDDCISVGDKFQEVQI
        TGDDC+SVGD  ++V I
Subjt:  TGDDCISVGDKFQEVQI

TYK14158.1 exopolygalacturonase-like [Cucumis melo var. makuwa]1.4e-3342.29Show/hide
Query:  MGLRPNFVTLLPLLLLFASIAKGQS---IFDVTKYGAQPNADIT------------------------------QNLK----------------------
        MGLR NF   L LL L AS  KGQS   +FDVT+YGA+PN DIT                               NLK                      
Subjt:  MGLRPNFVTLLPLLLLFASIAKGQS---IFDVTKYGAQPNADIT------------------------------QNLK----------------------

Query:  ---------------------------------------------FSFITNSIVKDITSLDSKNFHINVLGCKNVTFQHVTIIAPEDSPNTDGIHLSSSE
                                                     F+F+TNSIV+DITSLDSKNFHIN+LGCKN+TFQHVTI APEDSPNTDGIH+SSSE
Subjt:  ---------------------------------------------FSFITNSIVKDITSLDSKNFHINVLGCKNVTFQHVTIIAPEDSPNTDGIHLSSSE

Query:  EIYIMNTKISTGDDCISVGDKFQEVQI
        +I I+NTKISTGDDC+SVGD  +++ I
Subjt:  EIYIMNTKISTGDDCISVGDKFQEVQI

XP_004140444.1 exopolygalacturonase [Cucumis sativus]4.4e-3541.85Show/hide
Query:  MGLRPNFVTLLPLLLLFASIAKGQSIFDVTKYGAQPNADIT-----------------------------------------------------------
        MGLR NFV  L LL L AS  KGQS+FDVT+YGA+PN DIT                                                           
Subjt:  MGLRPNFVTLLPLLLLFASIAKGQSIFDVTKYGAQPNADIT-----------------------------------------------------------

Query:  -----------------------------------------QNLKFSFITNSIVKDITSLDSKNFHINVLGCKNVTFQHVTIIAPEDSPNTDGIHLSSSE
                                                   LKF+F+TNSIVKDITSLDSKNFHIN+LGCKN+TF+HVTI APE+SPNTDGIH+SSSE
Subjt:  -----------------------------------------QNLKFSFITNSIVKDITSLDSKNFHINVLGCKNVTFQHVTIIAPEDSPNTDGIHLSSSE

Query:  EIYIMNTKISTGDDCISVGDKFQEVQI
        +I I+NTKISTGDDC+SVGD  +++ I
Subjt:  EIYIMNTKISTGDDCISVGDKFQEVQI

XP_031744868.1 exopolygalacturonase [Cucumis sativus]4.9e-3442.98Show/hide
Query:  MGLRPNFVT-LLPLLLLFASIAKGQSIFDVTKYGAQPNADITQ---------------------------------------------------------
        MGLR N +T LL LLL+ AS AKGQSIFD+T YGA+PN DITQ                                                         
Subjt:  MGLRPNFVT-LLPLLLLFASIAKGQSIFDVTKYGAQPNADITQ---------------------------------------------------------

Query:  -------------------------------------------NLKFSFITNSIVKDITSLDSKNFHINVLGCKNVTFQHVTIIAPEDSPNTDGIHLSSS
                                                   N+KFSF+TNS+VKDITSLDSKNFH N+LGCKNVTFQ+VTIIAPE+SPNTDGIH+SSS
Subjt:  -------------------------------------------NLKFSFITNSIVKDITSLDSKNFHINVLGCKNVTFQHVTIIAPEDSPNTDGIHLSSS

Query:  EEIYIMNTKISTGDDCISVGDKFQEVQI
        E I I NT+ISTGDDCISVGD  +++ I
Subjt:  EEIYIMNTKISTGDDCISVGDKFQEVQI

TrEMBL top hitse value%identityAlignment
A0A0A0K590 Uncharacterized protein1.1e-3970.34Show/hide
Query:  LLPLLLLFASIAKGQSIFDVTKYGAQPNADITQNLKFSFITNSIVKDITSLDSKNFHINVLGCKNVTFQHVTIIAPEDSPNTDGIHLSSSEEIYIMNTKI
        LL LLL+ AS AKGQSIFD+T YGA+PN DITQN+KF+ I NSIVKDITSLDS+NFHIN+  CKNVT Q+VTII+PE +PN+DGIH+SSSEEI I+NT+I
Subjt:  LLPLLLLFASIAKGQSIFDVTKYGAQPNADITQNLKFSFITNSIVKDITSLDSKNFHINVLGCKNVTFQHVTIIAPEDSPNTDGIHLSSSEEIYIMNTKI

Query:  STGDDCISVGDKFQEVQI
        S G DC+SVGD  +++ I
Subjt:  STGDDCISVGDKFQEVQI

A0A0A0K6J6 Uncharacterized protein6.5e-4058.97Show/hide
Query:  VTLLPLLLLFASIAKGQSIFDVTKYGAQPNADITQ------------------------------------NLKFSFITNSIVKDITSLDSKNFHINVLG
        + LLP  LL AS  + QS+FDVT+YGA+PN DITQ                                    NLKFSFITNSIVKDITSLDSKNFHIN+LG
Subjt:  VTLLPLLLLFASIAKGQSIFDVTKYGAQPNADITQ------------------------------------NLKFSFITNSIVKDITSLDSKNFHINVLG

Query:  CKNVTFQHVTIIAPEDSPNTDGIHLSSSEEIYIMNTKISTGDDCISVGDKFQEVQI
        CKNVTFQHVTI APE+SPNTDGIH+SSSE+I I+++KISTGDDC+SVGD  ++V I
Subjt:  CKNVTFQHVTIIAPEDSPNTDGIHLSSSEEIYIMNTKISTGDDCISVGDKFQEVQI

A0A0A0KF15 Uncharacterized protein5.1e-3775.49Show/hide
Query:  IFDVTKYGAQPNADITQNLKFSFITNSIVKDITSLDSKNFHINVLGCKNVTFQHVTIIAPEDSPNTDGIHLSSSEEIYIMNTKISTGDDCISVGDKFQEV
        +FD+TKYGA+PNADIT NLK +FITNSIV  ITSLDSKNFHIN+LGCKN+TF HVTI AP +SPNTDGIH+SSSE+I I+NT I+TGDDCISVGD  ++V
Subjt:  IFDVTKYGAQPNADITQNLKFSFITNSIVKDITSLDSKNFHINVLGCKNVTFQHVTIIAPEDSPNTDGIHLSSSEEIYIMNTKISTGDDCISVGDKFQEV

Query:  QI
         I
Subjt:  QI

A0A0A0KPH7 Uncharacterized protein2.9e-4874.8Show/hide
Query:  MGLRPNFVTLLPLLLLFASIAKGQSIFDVTKYGAQPNADITQNLKFSFITNSIVKDITSLDSKNFHINVLGCKNVTFQHVTIIAPEDSPNTDGIHLSSSE
        MGLR NFV  L LL L AS  KGQS+FDVT+YGA+PN DIT  LKF+F+TNSIVKDITSLDSKNFHIN+LGCKN+TF+HVTI APE+SPNTDGIH+SSSE
Subjt:  MGLRPNFVTLLPLLLLFASIAKGQSIFDVTKYGAQPNADITQNLKFSFITNSIVKDITSLDSKNFHINVLGCKNVTFQHVTIIAPEDSPNTDGIHLSSSE

Query:  EIYIMNTKISTGDDCISVGDKFQEVQI
        +I I+NTKISTGDDC+SVGD  +++ I
Subjt:  EIYIMNTKISTGDDCISVGDKFQEVQI

A0A0A0LX75 Uncharacterized protein5.7e-4470.9Show/hide
Query:  MGLRPNFVTLLPLLLLFASIAKGQS-----IFDVTKYGAQPNADIT--QNLKFSFITNSIVKDITSLDSKNFHINVLGCKNVTFQHVTIIAPEDSPNTDG
        MGLR NFVTLLPL LL  S AKGQS     +FDVT +GA+PN DIT  + LK +FITNSIVKDITSLDSKN+HIN+LGCKN+TF HVTI APE+SPNTDG
Subjt:  MGLRPNFVTLLPLLLLFASIAKGQS-----IFDVTKYGAQPNADIT--QNLKFSFITNSIVKDITSLDSKNFHINVLGCKNVTFQHVTIIAPEDSPNTDG

Query:  IHLSSSEEIYIMNTKISTGDDCISVGDKFQEVQI
        IH+SSSE+I I+NT I+TGDDCISVGD  +++ I
Subjt:  IHLSSSEEIYIMNTKISTGDDCISVGDKFQEVQI

SwissProt top hitse value%identityAlignment
P24548 Exopolygalacturonase (Fragment)3.1e-2354.55Show/hide
Query:  ITQNLKFSFITNSIVKDITSLDSKNFHINVLGCKNVTFQHVTIIAPEDSPNTDGIHLSSSEEIYIMNTKISTGDDCISVGDKFQEVQI
        ++ NL+   +TNSI++D+T+LDSKNFH+NV+GCKN+TF+   I A E S NTDGIH+  S+ + I+NT+I TGDDCIS+GD  + + I
Subjt:  ITQNLKFSFITNSIVKDITSLDSKNFHINVLGCKNVTFQHVTIIAPEDSPNTDGIHLSSSEEIYIMNTKISTGDDCISVGDKFQEVQI

P35337 Polygalacturonase1.1e-2357.65Show/hide
Query:  NLKFSFITNSIVKDITSLDSKNFHINVLGCKNVTFQHVTIIAPEDSPNTDGIHLSSSEEIYIMNTKISTGDDCISVGDKFQEVQI
        +++F F+ N+ +KD+TSLD+KNFH NV+  KN+TF ++ IIAP +SPNTDGIHL   E + I+NTKI+TGDDCISVGD  + + I
Subjt:  NLKFSFITNSIVKDITSLDSKNFHINVLGCKNVTFQHVTIIAPEDSPNTDGIHLSSSEEIYIMNTKISTGDDCISVGDKFQEVQI

Q05967 Polygalacturonase2.0e-2254.55Show/hide
Query:  ITQNLKFSFITNSIVKDITSLDSKNFHINVLGCKNVTFQHVTIIAPEDSPNTDGIHLSSSEEIYIMNTKISTGDDCISVGDKFQEVQI
        +  NL F+ +TNS +KDIT+LDSK+FH+NV  CKN+TF    + AP +SPNTDGIH+S S  + I ++  STGDDCISVGD+ +++ I
Subjt:  ITQNLKFSFITNSIVKDITSLDSKNFHINVLGCKNVTFQHVTIIAPEDSPNTDGIHLSSSEEIYIMNTKISTGDDCISVGDKFQEVQI

Q40312 Polygalacturonase8.7e-2652.63Show/hide
Query:  GAQPNADITQNLKFSFITNSIVKDITSLDSKNFHINVLGCKNVTFQHVTIIAPEDSPNTDGIHLSSSEEIYIMNTKISTGDDCISVGDKFQEVQI
        G   N+ +  N  F+F+ NSIV+ +TS DSKNFH+ V GCKN+TF   TI AP DSPNTDGIH+  S ++ I+NT I TGDDC+S+GD  +++ +
Subjt:  GAQPNADITQNLKFSFITNSIVKDITSLDSKNFHINVLGCKNVTFQHVTIIAPEDSPNTDGIHLSSSEEIYIMNTKISTGDDCISVGDKFQEVQI

Q6H9K0 Exopolygalacturonase (Fragment)6.3e-2451.4Show/hide
Query:  KGQSIFDVTKYGAQPNA-DITQNLKFSFITNSIVKDITSLDSKNFHINVLGCKNVTFQHVTIIAPEDSPNTDGIHLSSSEEIYIMNTKISTGDDCISVGD
        +GQ+ +        PN      NL+F F+ +++V+DITSL+SK FHINVL C+++TFQHVT+ AP  S NTDGIH+  S+ + I NTKI+TGDDCIS+G 
Subjt:  KGQSIFDVTKYGAQPNA-DITQNLKFSFITNSIVKDITSLDSKNFHINVLGCKNVTFQHVTIIAPEDSPNTDGIHLSSSEEIYIMNTKISTGDDCISVGD

Query:  KFQEVQI
          Q V I
Subjt:  KFQEVQI

Arabidopsis top hitse value%identityAlignment
AT2G43870.1 Pectin lyase-like superfamily protein7.4e-2046.46Show/hide
Query:  AKGQSIFDVTKYGAQPNADITQNLKFSFITNSIVKDITSLDSKNFHINVLGCKNVTFQHVTIIAPEDSPNTDGIHLSSSEEIYIMNTKISTGDDCISVG
        A+G S++D  K G    +  T  + F   +N +V  +TSL+S+ FH+ + GC NV  Q V ++A  +SPNTDGIH+ SS  + I NTKISTGDDC+S+G
Subjt:  AKGQSIFDVTKYGAQPNADITQNLKFSFITNSIVKDITSLDSKNFHINVLGCKNVTFQHVTIIAPEDSPNTDGIHLSSSEEIYIMNTKISTGDDCISVG

AT3G07820.1 Pectin lyase-like superfamily protein6.9e-2658.82Show/hide
Query:  NLKFSFITNSIVKDITSLDSKNFHINVLGCKNVTFQHVTIIAPEDSPNTDGIHLSSSEEIYIMNTKISTGDDCISVGDKFQEVQI
        +++F FI NS ++DI+S+D+KNFHINVLG KN+T  ++ I+APEDSPNTDGIHL  S+ + I+N+ ISTGDDCISVGD  + + +
Subjt:  NLKFSFITNSIVKDITSLDSKNFHINVLGCKNVTFQHVTIIAPEDSPNTDGIHLSSSEEIYIMNTKISTGDDCISVGDKFQEVQI

AT3G07830.1 Pectin lyase-like superfamily protein7.6e-2560.26Show/hide
Query:  NLKFSFITNSIVKDITSLDSKNFHINVLGCKNVTFQHVTIIAPEDSPNTDGIHLSSSEEIYIMNTKISTGDDCISVGD
        +++F F+TN+ ++DI+S+D+KNFHINV+G KN+TF +V I+AP +SPNTDGIHL  S  + I+N++ISTGDDC+SVGD
Subjt:  NLKFSFITNSIVKDITSLDSKNFHINVLGCKNVTFQHVTIIAPEDSPNTDGIHLSSSEEIYIMNTKISTGDDCISVGD

AT3G07840.1 Pectin lyase-like superfamily protein5.3e-2657.65Show/hide
Query:  NLKFSFITNSIVKDITSLDSKNFHINVLGCKNVTFQHVTIIAPEDSPNTDGIHLSSSEEIYIMNTKISTGDDCISVGDKFQEVQI
        +++F F+ N+ ++DI+S+D+KNFHINVLG KN+TF +V +IAP +SPNTDGIHL  SE + I+N+KI+TGDDCISVGD  + + +
Subjt:  NLKFSFITNSIVKDITSLDSKNFHINVLGCKNVTFQHVTIIAPEDSPNTDGIHLSSSEEIYIMNTKISTGDDCISVGDKFQEVQI

AT5G48140.1 Pectin lyase-like superfamily protein4.9e-2456.47Show/hide
Query:  NLKFSFITNSIVKDITSLDSKNFHINVLGCKNVTFQHVTIIAPEDSPNTDGIHLSSSEEIYIMNTKISTGDDCISVGDKFQEVQI
        +++F F+T++ ++ ITSLD+K+FHINV+G KNVTF+ V IIAP +SPNTDGIH+  S+ I I+N+ ISTGDDC+SVGD  + + +
Subjt:  NLKFSFITNSIVKDITSLDSKNFHINVLGCKNVTFQHVTIIAPEDSPNTDGIHLSSSEEIYIMNTKISTGDDCISVGDKFQEVQI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGATTGAGGCCAAACTTTGTGACATTACTACCATTGTTGTTATTGTTTGCATCTATTGCAAAAGGTCAATCTATTTTTGATGTCACTAAGTATGGTGCCCAACCTAA
TGCTGATATTACTCAAAACTTGAAGTTCAGTTTCATCACCAATTCAATAGTGAAGGACATTACATCATTGGATAGCAAGAATTTTCATATCAATGTTTTGGGCTGCAAGA
ATGTTACTTTTCAACACGTGACAATTATTGCACCAGAGGATAGTCCTAATACAGATGGAATTCACCTGAGTAGTTCAGAAGAGATTTACATTATGAATACAAAAATCTCA
ACTGGAGATGATTGTATATCTGTAGGAGATAAATTTCAAGAAGTTCAAATCCCTCATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGATTGAGGCCAAACTTTGTGACATTACTACCATTGTTGTTATTGTTTGCATCTATTGCAAAAGGTCAATCTATTTTTGATGTCACTAAGTATGGTGCCCAACCTAA
TGCTGATATTACTCAAAACTTGAAGTTCAGTTTCATCACCAATTCAATAGTGAAGGACATTACATCATTGGATAGCAAGAATTTTCATATCAATGTTTTGGGCTGCAAGA
ATGTTACTTTTCAACACGTGACAATTATTGCACCAGAGGATAGTCCTAATACAGATGGAATTCACCTGAGTAGTTCAGAAGAGATTTACATTATGAATACAAAAATCTCA
ACTGGAGATGATTGTATATCTGTAGGAGATAAATTTCAAGAAGTTCAAATCCCTCATTGA
Protein sequenceShow/hide protein sequence
MGLRPNFVTLLPLLLLFASIAKGQSIFDVTKYGAQPNADITQNLKFSFITNSIVKDITSLDSKNFHINVLGCKNVTFQHVTIIAPEDSPNTDGIHLSSSEEIYIMNTKIS
TGDDCISVGDKFQEVQIPH