; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0007367 (gene) of Snake gourd v1 genome

Gene IDTan0007367
OrganismTrichosanthes anguina (Snake gourd v1)
Descriptionribonuclease H2 subunit C
Genome locationLG05:80286034..80288121
RNA-Seq ExpressionTan0007367
SyntenyTan0007367
Gene Ontology termsGO:0006401 - RNA catabolic process (biological process)
GO:0032299 - ribonuclease H2 complex (cellular component)
InterPro domainsIPR013924 - Ribonuclease H2, subunit C


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6583796.1 Ribonuclease H2 subunit C, partial [Cucurbita argyrosperma subsp. sororia]1.9e-7886.75Show/hide
Query:  MDAENEREREVIVDFDFGRDSVAVDLSGKVHQLPCAIKFDGPCSVSQYFKPKSTGVEVDGLSVEEAYFRGRKLQGATISLPEGYSGYVLGRRSLGKRKVC
        MD+ENER+REVIVDFDFG DS AVDLSGKVHQLPCA+KFDGPCSVSQYFKPKSTG+EVDGLSVE AYFRGRKLQGATISLPEGYSGYV+GR+S GKRK  
Subjt:  MDAENEREREVIVDFDFGRDSVAVDLSGKVHQLPCAIKFDGPCSVSQYFKPKSTGVEVDGLSVEEAYFRGRKLQGATISLPEGYSGYVLGRRSLGKRKVC

Query:  EESKDSSPWQVKAKFENITYWNHGALPSQDDTFRRSFHWLTVAQALHQPVTAEDLTSASTALKNMS
        EES+DSS WQVKAKFENITYWNH  LP+QDDTF+RSFHWLTVAQALH+PVTAEDL +AS ALKNMS
Subjt:  EESKDSSPWQVKAKFENITYWNHGALPSQDDTFRRSFHWLTVAQALHQPVTAEDLTSASTALKNMS
XP_022927160.1 uncharacterized protein C12B10.15c [Cucurbita moschata]9.3e-7886.14Show/hide
Query:  MDAENEREREVIVDFDFGRDSVAVDLSGKVHQLPCAIKFDGPCSVSQYFKPKSTGVEVDGLSVEEAYFRGRKLQGATISLPEGYSGYVLGRRSLGKRKVC
        MD+E ER+REVIVDFDFG DS AVDLSGKVHQLPCA+KFDGPCSVSQYFKPKSTG+EVDGLSVE AYFRGRKLQGATISLPEGYSGYV+GR+S GKRK  
Subjt:  MDAENEREREVIVDFDFGRDSVAVDLSGKVHQLPCAIKFDGPCSVSQYFKPKSTGVEVDGLSVEEAYFRGRKLQGATISLPEGYSGYVLGRRSLGKRKVC

Query:  EESKDSSPWQVKAKFENITYWNHGALPSQDDTFRRSFHWLTVAQALHQPVTAEDLTSASTALKNMS
        EES+DSS WQVKAKFENITYWNH  LP+QDDTF+RSFHWLTVAQALH+PVTAEDL +AS ALKNMS
Subjt:  EESKDSSPWQVKAKFENITYWNHGALPSQDDTFRRSFHWLTVAQALHQPVTAEDLTSASTALKNMS
XP_023001622.1 uncharacterized protein C12B10.15c [Cucurbita maxima]3.5e-7785.54Show/hide
Query:  MDAENEREREVIVDFDFGRDSVAVDLSGKVHQLPCAIKFDGPCSVSQYFKPKSTGVEVDGLSVEEAYFRGRKLQGATISLPEGYSGYVLGRRSLGKRKVC
        MD+E ER+REVIVDFDFG DS AVDLSGKVHQLPCA+KFDGPCSVSQYFKPKSTG+EVDGLSV+ AYFRGRKLQGATISLPEGY GYV+GR+SL KRK  
Subjt:  MDAENEREREVIVDFDFGRDSVAVDLSGKVHQLPCAIKFDGPCSVSQYFKPKSTGVEVDGLSVEEAYFRGRKLQGATISLPEGYSGYVLGRRSLGKRKVC

Query:  EESKDSSPWQVKAKFENITYWNHGALPSQDDTFRRSFHWLTVAQALHQPVTAEDLTSASTALKNMS
        EES+DSS WQVKAKFENITYWNH  LP+QDDTF+RSFHWLTVAQALH+PVTAEDL  ASTALKNMS
Subjt:  EESKDSSPWQVKAKFENITYWNHGALPSQDDTFRRSFHWLTVAQALHQPVTAEDLTSASTALKNMS
XP_023519278.1 uncharacterized protein C12B10.15c [Cucurbita pepo subsp. pepo]4.6e-7785.54Show/hide
Query:  MDAENEREREVIVDFDFGRDSVAVDLSGKVHQLPCAIKFDGPCSVSQYFKPKSTGVEVDGLSVEEAYFRGRKLQGATISLPEGYSGYVLGRRSLGKRKVC
        MD+E+ER+REVIVDFDFG DS  VDLSGKVHQLPCA+KFDGPCSVSQYFKPKSTG+EVDGLSVE AYFRGRKLQGATISLPEGYSGYV+GR+S GKRK  
Subjt:  MDAENEREREVIVDFDFGRDSVAVDLSGKVHQLPCAIKFDGPCSVSQYFKPKSTGVEVDGLSVEEAYFRGRKLQGATISLPEGYSGYVLGRRSLGKRKVC

Query:  EESKDSSPWQVKAKFENITYWNHGALPSQDDTFRRSFHWLTVAQALHQPVTAEDLTSASTALKNMS
        EES+DSS WQVKAKFENITYWNH  LP+QDDTF RSFHWLTVAQALH+P TAEDL +ASTALKNMS
Subjt:  EESKDSSPWQVKAKFENITYWNHGALPSQDDTFRRSFHWLTVAQALHQPVTAEDLTSASTALKNMS
XP_038893586.1 uncharacterized protein C12B10.15c [Benincasa hispida]5.5e-7886.75Show/hide
Query:  MDAENEREREVIVDFDFGRDSVAVDLSGKVHQLPCAIKFDGPCSVSQYFKPKSTGVEVDGLSVEEAYFRGRKLQGATISLPEGYSGYVLGRRSLGKRKVC
        M+AENER+ EVIVDFDF  DSVA+DLSGKVHQLPCAIKFDGPCSVSQYFKPKSTG+E DGLSVEEAYFRGRKLQGATISLPEGYSGYVLG++SLGKRK  
Subjt:  MDAENEREREVIVDFDFGRDSVAVDLSGKVHQLPCAIKFDGPCSVSQYFKPKSTGVEVDGLSVEEAYFRGRKLQGATISLPEGYSGYVLGRRSLGKRKVC

Query:  EESKDSSPWQVKAKFENITYWNHGALPSQDDTFRRSFHWLTVAQALHQPVTAEDLTSASTALKNMS
        E+ ++SSPWQVKAKF NITYWNH  LPSQDDTF+RSFHWLTVAQALH+PVTAEDL SASTALKNMS
Subjt:  EESKDSSPWQVKAKFENITYWNHGALPSQDDTFRRSFHWLTVAQALHQPVTAEDLTSASTALKNMS
TrEMBL top hitse value%identityAlignment
A0A1S3C9A8 uncharacterized protein C12B10.15c3.5e-7077.38Show/hide
Query:  MDAENEREREVIV--DFDFGRDSVAVDLSGKVHQLPCAIKFDGPCSVSQYFKPKSTGVEVDGLSVEEAYFRGRKLQGATISLPEGYSGYVLGRRSLGKRK
        M+A+N R+ E  V  DFDFG D  A+DLSGK+HQLPC IKFDGPC VS YFKPKSTG+EVDGL+VEEAYFRGRKLQGATISLPEGYSGYVLG++SLGK K
Subjt:  MDAENEREREVIV--DFDFGRDSVAVDLSGKVHQLPCAIKFDGPCSVSQYFKPKSTGVEVDGLSVEEAYFRGRKLQGATISLPEGYSGYVLGRRSLGKRK

Query:  VCEESKDSSPWQVKAKFENITYWNHGALPSQDDTFRRSFHWLTVAQALHQPVTAEDLTSASTALKNMS
          ++  DSSPWQVKAKF+NITYWNH  LPSQDDTF+R+FHWLTVAQALH+PVTAEDL SAS AL N+S
Subjt:  VCEESKDSSPWQVKAKFENITYWNHGALPSQDDTFRRSFHWLTVAQALHQPVTAEDLTSASTALKNMS
A0A5A7TIT8 Ribonuclease H2 subunit C isoform X23.5e-7077.38Show/hide
Query:  MDAENEREREVIV--DFDFGRDSVAVDLSGKVHQLPCAIKFDGPCSVSQYFKPKSTGVEVDGLSVEEAYFRGRKLQGATISLPEGYSGYVLGRRSLGKRK
        M+A+N R+ E  V  DFDFG D  A+DLSGK+HQLPC IKFDGPC VS YFKPKSTG+EVDGL+VEEAYFRGRKLQGATISLPEGYSGYVLG++SLGK K
Subjt:  MDAENEREREVIV--DFDFGRDSVAVDLSGKVHQLPCAIKFDGPCSVSQYFKPKSTGVEVDGLSVEEAYFRGRKLQGATISLPEGYSGYVLGRRSLGKRK

Query:  VCEESKDSSPWQVKAKFENITYWNHGALPSQDDTFRRSFHWLTVAQALHQPVTAEDLTSASTALKNMS
          ++  DSSPWQVKAKF+NITYWNH  LPSQDDTF+R+FHWLTVAQALH+PVTAEDL SAS AL N+S
Subjt:  VCEESKDSSPWQVKAKFENITYWNHGALPSQDDTFRRSFHWLTVAQALHQPVTAEDLTSASTALKNMS
A0A6J1CLH6 ribonuclease H2 subunit C6.7e-7483.73Show/hide
Query:  MDAENEREREVIVDFDFGRDSVAVDLSGKVHQLPCAIKFDGPCSVSQYFKPKSTGVEVDGLSVEEAYFRGRKLQGATISLPEGYSGYVLGRRSLGKRKVC
        MDAENER+REVIVD D GRDS AVDLSGKVHQLPC +K DGPCSVS YFKPK TG+EVDGLSVEEAYFRGRKLQGATISLPEGYSG+VLGR+ LGKRK  
Subjt:  MDAENEREREVIVDFDFGRDSVAVDLSGKVHQLPCAIKFDGPCSVSQYFKPKSTGVEVDGLSVEEAYFRGRKLQGATISLPEGYSGYVLGRRSLGKRKVC

Query:  EESKDSSPWQVKAKFENITYWNHGALPSQDDTFRRSFHWLTVAQALHQPVTAEDLTSASTALKNMS
        E+S+DS  W+VKAKF NITYWNH  LPSQDD FRRSFHWLTVAQALHQPVTAEDL SASTA K+MS
Subjt:  EESKDSSPWQVKAKFENITYWNHGALPSQDDTFRRSFHWLTVAQALHQPVTAEDLTSASTALKNMS
A0A6J1EN41 uncharacterized protein C12B10.15c4.5e-7886.14Show/hide
Query:  MDAENEREREVIVDFDFGRDSVAVDLSGKVHQLPCAIKFDGPCSVSQYFKPKSTGVEVDGLSVEEAYFRGRKLQGATISLPEGYSGYVLGRRSLGKRKVC
        MD+E ER+REVIVDFDFG DS AVDLSGKVHQLPCA+KFDGPCSVSQYFKPKSTG+EVDGLSVE AYFRGRKLQGATISLPEGYSGYV+GR+S GKRK  
Subjt:  MDAENEREREVIVDFDFGRDSVAVDLSGKVHQLPCAIKFDGPCSVSQYFKPKSTGVEVDGLSVEEAYFRGRKLQGATISLPEGYSGYVLGRRSLGKRKVC

Query:  EESKDSSPWQVKAKFENITYWNHGALPSQDDTFRRSFHWLTVAQALHQPVTAEDLTSASTALKNMS
        EES+DSS WQVKAKFENITYWNH  LP+QDDTF+RSFHWLTVAQALH+PVTAEDL +AS ALKNMS
Subjt:  EESKDSSPWQVKAKFENITYWNHGALPSQDDTFRRSFHWLTVAQALHQPVTAEDLTSASTALKNMS
A0A6J1KH29 uncharacterized protein C12B10.15c1.7e-7785.54Show/hide
Query:  MDAENEREREVIVDFDFGRDSVAVDLSGKVHQLPCAIKFDGPCSVSQYFKPKSTGVEVDGLSVEEAYFRGRKLQGATISLPEGYSGYVLGRRSLGKRKVC
        MD+E ER+REVIVDFDFG DS AVDLSGKVHQLPCA+KFDGPCSVSQYFKPKSTG+EVDGLSV+ AYFRGRKLQGATISLPEGY GYV+GR+SL KRK  
Subjt:  MDAENEREREVIVDFDFGRDSVAVDLSGKVHQLPCAIKFDGPCSVSQYFKPKSTGVEVDGLSVEEAYFRGRKLQGATISLPEGYSGYVLGRRSLGKRKVC

Query:  EESKDSSPWQVKAKFENITYWNHGALPSQDDTFRRSFHWLTVAQALHQPVTAEDLTSASTALKNMS
        EES+DSS WQVKAKFENITYWNH  LP+QDDTF+RSFHWLTVAQALH+PVTAEDL  ASTALKNMS
Subjt:  EESKDSSPWQVKAKFENITYWNHGALPSQDDTFRRSFHWLTVAQALHQPVTAEDLTSASTALKNMS
SwissProt top hitse value%identityAlignment
Q10448 Uncharacterized protein C12B10.15c9.6e-0932.2Show/hide
Query:  KVHQLPCAIKFDGPCSVSQYFKPKSTGVEVDGLSVEEAYFRGRKLQGATISLPEGYSG-YVLGRRSLGKRKVCEESKDSSPWQVKAKFENITYWNHGAL-
        K   LPC I +DGP  V +YF  K   +  +  S      RGR+L G  + LPE Y+G  VL    L   +  E+    S W + + FE +  WN   + 
Subjt:  KVHQLPCAIKFDGPCSVSQYFKPKSTGVEVDGLSVEEAYFRGRKLQGATISLPEGYSG-YVLGRRSLGKRKVCEESKDSSPWQVKAKFENITYWNHGAL-

Query:  PSQDDTFRRS-FHWLTVA
         S+ D ++R    W+  A
Subjt:  PSQDDTFRRS-FHWLTVA
Arabidopsis top hitse value%identityAlignment
AT2G39440.1 CONTAINS InterPro DOMAIN/s: Ribonuclease H2, subunit C (InterPro:IPR013924); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).7.9e-5160.51Show/hide
Query:  VDFDFGRD-SVAVDLSGKVHQLPCAIKFDGPCSVSQYFKPKSTGVEVDGLSVEEAYFRGRKLQGATISLPEGYSGYVLGRRS----LGKRKVCEESKDSS
        +DF    D +  VDLS +VHQLPC I+FDGP  VS YFKPKS+ VE+DG+  EEA+FRGRKLQGATISLP GYSG+VL + S     GKRK    ++D+ 
Subjt:  VDFDFGRD-SVAVDLSGKVHQLPCAIKFDGPCSVSQYFKPKSTGVEVDGLSVEEAYFRGRKLQGATISLPEGYSGYVLGRRS----LGKRKVCEESKDSS

Query:  PWQVKAKFENITYWNHGALPSQDDTFRRSFHWLTVAQALHQPVTAEDLTSASTALKN
         W+VKAKF N+TYWNH +LPS+DDTF RSFHW ++A+ALH+PV  EDL + S   KN
Subjt:  PWQVKAKFENITYWNHGALPSQDDTFRRSFHWLTVAQALHQPVTAEDLTSASTALKN

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGCTGAAAACGAGAGGGAAAGGGAAGTAATCGTGGATTTTGATTTTGGAAGGGACTCTGTAGCCGTCGATCTCAGCGGTAAAGTCCATCAGCTTCCCTGTGCCAT
TAAATTCGATGGTCCTTGTTCAGTTTCTCAGTATTTCAAACCCAAATCCACTGGAGTTGAGGTCGATGGTTTGAGCGTCGAGGAAGCTTATTTCAGAGGAAGAAAGTTGC
AGGGAGCTACCATTTCCCTTCCAGAAGGTTACTCTGGCTATGTGCTAGGGAGGCGAAGTCTTGGAAAGAGAAAAGTTTGTGAAGAGTCCAAGGACTCAAGCCCTTGGCAG
GTGAAGGCCAAATTTGAGAACATTACATATTGGAACCATGGAGCCCTACCTTCGCAAGATGATACGTTCCGACGTTCTTTTCACTGGCTCACCGTTGCACAAGCATTGCA
CCAACCGGTGACAGCAGAAGATTTGACATCTGCATCTACTGCTCTCAAGAACATGAGTTGA
mRNA sequenceShow/hide mRNA sequence
ATTTTTATTATTTAGGTAAAAAAAAAGAGAAGTGTCATTCTTGTCGTCTTTTATTAACCATTTTCAAGGTTCATAGGAGAAATGGTCGATCGAATTTCCTTGTTAGATAT
TCGAAGCATCAACGTGGGTTGAGTCTGGGGTTGCTTCAAAATTAATCAAATGGATGCTGAAAACGAGAGGGAAAGGGAAGTAATCGTGGATTTTGATTTTGGAAGGGACT
CTGTAGCCGTCGATCTCAGCGGTAAAGTCCATCAGCTTCCCTGTGCCATTAAATTCGATGGTCCTTGTTCAGTTTCTCAGTATTTCAAACCCAAATCCACTGGAGTTGAG
GTCGATGGTTTGAGCGTCGAGGAAGCTTATTTCAGAGGAAGAAAGTTGCAGGGAGCTACCATTTCCCTTCCAGAAGGTTACTCTGGCTATGTGCTAGGGAGGCGAAGTCT
TGGAAAGAGAAAAGTTTGTGAAGAGTCCAAGGACTCAAGCCCTTGGCAGGTGAAGGCCAAATTTGAGAACATTACATATTGGAACCATGGAGCCCTACCTTCGCAAGATG
ATACGTTCCGACGTTCTTTTCACTGGCTCACCGTTGCACAAGCATTGCACCAACCGGTGACAGCAGAAGATTTGACATCTGCATCTACTGCTCTCAAGAACATGAGTTGA
TTAGTGTGAACTGTCATGTGGCTCTGAGAAGGAAATTTCTAAGACTACAGTAGTATGAAATGATTCCATACTCCACTTTTTATTTAGTCACATTGTTATCTATTTTACCA
ATTTATTTAATGAGTTTCGTATGATTATTTTTTTTTTGATAACCGGATGTCTGAAGAATTTTATAGCATGGTAGTATTAGAATTTTGATTTACATTTTATTTTAGTCATT
TAACTTCAAGAGTTCTACAATAAAACTAATATTTATAAAATACAAGAGTGTGATTCTCATGTCTGCAA
Protein sequenceShow/hide protein sequence
MDAENEREREVIVDFDFGRDSVAVDLSGKVHQLPCAIKFDGPCSVSQYFKPKSTGVEVDGLSVEEAYFRGRKLQGATISLPEGYSGYVLGRRSLGKRKVCEESKDSSPWQ
VKAKFENITYWNHGALPSQDDTFRRSFHWLTVAQALHQPVTAEDLTSASTALKNMS