CuGenDBv2

Gene ID	Tan0007461
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Gag/pol protein
Genome location	LG06:52115314..52115892
RNA-Seq Expression	Tan0007461
Synteny	Tan0007461
Gene Ontology terms	GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008234 - cysteine-type peptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0044955.1 gag/pol protein [Cucumis melo var. makuwa]

1.6e-68

70.11

Show/hide

Query:  MSSSIIALLKSDRLTYENFTTWKSNLNTILIVDDVRFVLTEECPQIPARNAPQSIKEAYDRWIKANDKAKVYILASVSEVLAKKHEGMVSAREIMSSLQE
        M+S+ + +L +D+L   N+ +WK+ +NT+LI+DD+RFVL EECPQ+PA NA ++++E Y+RW KAN+KA+ YILAS+SEVLAKKHE M++AREIM SLQE
Subjt:  MSSSIIALLKSDRLTYENFTTWKSNLNTILIVDDVRFVLTEECPQIPARNAPQSIKEAYDRWIKANDKAKVYILASVSEVLAKKHEGMVSAREIMSSLQE

Query:  MFGQPSGQIRHESLKYIYNSRMKEGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFRNNAVMNKIEYNLTT
        MFGQ S QI+H++LKYIYN+RM EG+SVREHVL++MVHFNVAEMNGAVIDE SQVSFILESLP+SFLQFR+NAVMNKI Y LTT
Subjt:  MFGQPSGQIRHESLKYIYNSRMKEGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFRNNAVMNKIEYNLTT

KAA0051952.1 gag/pol protein [Cucumis melo var. makuwa]

1.6e-68

70.11

Show/hide

Query:  MSSSIIALLKSDRLTYENFTTWKSNLNTILIVDDVRFVLTEECPQIPARNAPQSIKEAYDRWIKANDKAKVYILASVSEVLAKKHEGMVSAREIMSSLQE
        M+S+ + +L +D+L   N+ +WK+ +NT+LI+DD+RFVL EECPQ+PA NA ++++E Y+RW KAN+KA+ YILAS+SEVLAKKHE M++AREIM SLQE
Subjt:  MSSSIIALLKSDRLTYENFTTWKSNLNTILIVDDVRFVLTEECPQIPARNAPQSIKEAYDRWIKANDKAKVYILASVSEVLAKKHEGMVSAREIMSSLQE

Query:  MFGQPSGQIRHESLKYIYNSRMKEGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFRNNAVMNKIEYNLTT
        MFGQ S QI+H++LKYIYN+RM EG+SVREHVL++MVHFNVAEMNGAVIDE SQVSFILESLP+SFLQFR+NAVMNKI Y LTT
Subjt:  MFGQPSGQIRHESLKYIYNSRMKEGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFRNNAVMNKIEYNLTT

KAA0054490.1 gag/pol protein [Cucumis melo var. makuwa]

1.6e-68

70.11

Show/hide

Query:  MSSSIIALLKSDRLTYENFTTWKSNLNTILIVDDVRFVLTEECPQIPARNAPQSIKEAYDRWIKANDKAKVYILASVSEVLAKKHEGMVSAREIMSSLQE
        M+S+ + +L +D+L   N+ +WK+ +NT+LI+DD+RFVL EECPQ+PA NA ++++E Y+RW KAN+KA+ YILAS+SEVLAKKHE M++AREIM SLQE
Subjt:  MSSSIIALLKSDRLTYENFTTWKSNLNTILIVDDVRFVLTEECPQIPARNAPQSIKEAYDRWIKANDKAKVYILASVSEVLAKKHEGMVSAREIMSSLQE

Query:  MFGQPSGQIRHESLKYIYNSRMKEGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFRNNAVMNKIEYNLTT
        MFGQ S QI+H++LKYIYN+RM EG+SVREHVL++MVHFNVAEMNGAVIDE SQVSFILESLP+SFLQFR+NAVMNKI Y LTT
Subjt:  MFGQPSGQIRHESLKYIYNSRMKEGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFRNNAVMNKIEYNLTT

KAA0061339.1 gag/pol protein [Cucumis melo var. makuwa]

7.0e-69

70.65

Show/hide

Query:  MSSSIIALLKSDRLTYENFTTWKSNLNTILIVDDVRFVLTEECPQIPARNAPQSIKEAYDRWIKANDKAKVYILASVSEVLAKKHEGMVSAREIMSSLQE
        M+S+ + +L +D+L   N+  WK+ +NT+LI+DD+RFVL EECPQ+PA NA Q+++E Y+RW KAN+KA+ YILAS+SEVLAKKHE M++AREIM SLQE
Subjt:  MSSSIIALLKSDRLTYENFTTWKSNLNTILIVDDVRFVLTEECPQIPARNAPQSIKEAYDRWIKANDKAKVYILASVSEVLAKKHEGMVSAREIMSSLQE

Query:  MFGQPSGQIRHESLKYIYNSRMKEGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFRNNAVMNKIEYNLTT
        MFGQ S QI+H++LKYIYN+RM EG+SVREHVL++MVHFNVAEMNGAVIDE SQVSFILESLP+SFLQFR+NAVMNKI Y LTT
Subjt:  MFGQPSGQIRHESLKYIYNSRMKEGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFRNNAVMNKIEYNLTT

TYK14550.1 gag/pol protein [Cucumis melo var. makuwa]

1.6e-68

70.11

Show/hide

Query:  MSSSIIALLKSDRLTYENFTTWKSNLNTILIVDDVRFVLTEECPQIPARNAPQSIKEAYDRWIKANDKAKVYILASVSEVLAKKHEGMVSAREIMSSLQE
        M+S+ + +L +D+L   N+ +WK+ +NT+LI+DD+RFVL EECPQ+PA NA ++++E Y+RW KAN+KA+ YILAS+SEVLAKKHE M++AREIM SLQE
Subjt:  MSSSIIALLKSDRLTYENFTTWKSNLNTILIVDDVRFVLTEECPQIPARNAPQSIKEAYDRWIKANDKAKVYILASVSEVLAKKHEGMVSAREIMSSLQE

Query:  MFGQPSGQIRHESLKYIYNSRMKEGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFRNNAVMNKIEYNLTT
        MFGQ S QI+H++LKYIYN+RM EG+SVREHVL++MVHFNVAEMNGAVIDE SQVSFILESLP+SFLQFR+NAVMNKI Y LTT
Subjt:  MFGQPSGQIRHESLKYIYNSRMKEGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFRNNAVMNKIEYNLTT

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SMH8 Gag/pol protein

7.6e-69

70.11

Show/hide

Query:  MSSSIIALLKSDRLTYENFTTWKSNLNTILIVDDVRFVLTEECPQIPARNAPQSIKEAYDRWIKANDKAKVYILASVSEVLAKKHEGMVSAREIMSSLQE
        M+S+ + +L +D+L   N+ +WK+ +NT+LI+DD+RFVL EECPQ+PA NA ++++E Y+RW KAN+KA+ YILAS+SEVLAKKHE M++AREIM SLQE
Subjt:  MSSSIIALLKSDRLTYENFTTWKSNLNTILIVDDVRFVLTEECPQIPARNAPQSIKEAYDRWIKANDKAKVYILASVSEVLAKKHEGMVSAREIMSSLQE

Query:  MFGQPSGQIRHESLKYIYNSRMKEGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFRNNAVMNKIEYNLTT
        MFGQ S QI+H++LKYIYN+RM EG+SVREHVL++MVHFNVAEMNGAVIDE SQVSFILESLP+SFLQFR+NAVMNKI Y LTT
Subjt:  MFGQPSGQIRHESLKYIYNSRMKEGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFRNNAVMNKIEYNLTT

A0A5A7TU93 Gag/pol protein

7.6e-69

70.11

Show/hide

Query:  MSSSIIALLKSDRLTYENFTTWKSNLNTILIVDDVRFVLTEECPQIPARNAPQSIKEAYDRWIKANDKAKVYILASVSEVLAKKHEGMVSAREIMSSLQE
        M+S+ + +L +D+L   N+ +WK+ +NT+LI+DD+RFVL EECPQ+PA NA ++++E Y+RW KAN+KA+ YILAS+SEVLAKKHE M++AREIM SLQE
Subjt:  MSSSIIALLKSDRLTYENFTTWKSNLNTILIVDDVRFVLTEECPQIPARNAPQSIKEAYDRWIKANDKAKVYILASVSEVLAKKHEGMVSAREIMSSLQE

Query:  MFGQPSGQIRHESLKYIYNSRMKEGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFRNNAVMNKIEYNLTT
        MFGQ S QI+H++LKYIYN+RM EG+SVREHVL++MVHFNVAEMNGAVIDE SQVSFILESLP+SFLQFR+NAVMNKI Y LTT
Subjt:  MFGQPSGQIRHESLKYIYNSRMKEGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFRNNAVMNKIEYNLTT

A0A5A7TWB9 Gag/pol protein

7.6e-69

70.11

Show/hide

Query:  MSSSIIALLKSDRLTYENFTTWKSNLNTILIVDDVRFVLTEECPQIPARNAPQSIKEAYDRWIKANDKAKVYILASVSEVLAKKHEGMVSAREIMSSLQE
        M+S+ + +L +D+L   N+ +WK+ +NT+LI+DD+RFVL EECPQ+PA NA ++++E Y+RW KAN+KA+ YILAS+SEVLAKKHE M++AREIM SLQE
Subjt:  MSSSIIALLKSDRLTYENFTTWKSNLNTILIVDDVRFVLTEECPQIPARNAPQSIKEAYDRWIKANDKAKVYILASVSEVLAKKHEGMVSAREIMSSLQE

Query:  MFGQPSGQIRHESLKYIYNSRMKEGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFRNNAVMNKIEYNLTT
        MFGQ S QI+H++LKYIYN+RM EG+SVREHVL++MVHFNVAEMNGAVIDE SQVSFILESLP+SFLQFR+NAVMNKI Y LTT
Subjt:  MFGQPSGQIRHESLKYIYNSRMKEGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFRNNAVMNKIEYNLTT

A0A5A7V6N0 Gag/pol protein

3.4e-69

70.65

Show/hide

Query:  MSSSIIALLKSDRLTYENFTTWKSNLNTILIVDDVRFVLTEECPQIPARNAPQSIKEAYDRWIKANDKAKVYILASVSEVLAKKHEGMVSAREIMSSLQE
        M+S+ + +L +D+L   N+  WK+ +NT+LI+DD+RFVL EECPQ+PA NA Q+++E Y+RW KAN+KA+ YILAS+SEVLAKKHE M++AREIM SLQE
Subjt:  MSSSIIALLKSDRLTYENFTTWKSNLNTILIVDDVRFVLTEECPQIPARNAPQSIKEAYDRWIKANDKAKVYILASVSEVLAKKHEGMVSAREIMSSLQE

Query:  MFGQPSGQIRHESLKYIYNSRMKEGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFRNNAVMNKIEYNLTT
        MFGQ S QI+H++LKYIYN+RM EG+SVREHVL++MVHFNVAEMNGAVIDE SQVSFILESLP+SFLQFR+NAVMNKI Y LTT
Subjt:  MFGQPSGQIRHESLKYIYNSRMKEGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFRNNAVMNKIEYNLTT

A0A5D3CPJ6 Gag/pol protein

7.6e-69

70.11

Show/hide

Query:  MSSSIIALLKSDRLTYENFTTWKSNLNTILIVDDVRFVLTEECPQIPARNAPQSIKEAYDRWIKANDKAKVYILASVSEVLAKKHEGMVSAREIMSSLQE
        M+S+ + +L +D+L   N+ +WK+ +NT+LI+DD+RFVL EECPQ+PA NA ++++E Y+RW KAN+KA+ YILAS+SEVLAKKHE M++AREIM SLQE
Subjt:  MSSSIIALLKSDRLTYENFTTWKSNLNTILIVDDVRFVLTEECPQIPARNAPQSIKEAYDRWIKANDKAKVYILASVSEVLAKKHEGMVSAREIMSSLQE

Query:  MFGQPSGQIRHESLKYIYNSRMKEGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFRNNAVMNKIEYNLTT
        MFGQ S QI+H++LKYIYN+RM EG+SVREHVL++MVHFNVAEMNGAVIDE SQVSFILESLP+SFLQFR+NAVMNKI Y LTT
Subjt:  MFGQPSGQIRHESLKYIYNSRMKEGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFRNNAVMNKIEYNLTT

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGTCGTCCTCAATAATAGCCTTACTTAAAAGCGATCGTTTAACTTATGAGAATTTTACTACGTGGAAGTCCAACTTGAATACGATTCTCATTGTTGACGACGTACGATT
TGTACTAACTGAGGAATGTCCTCAGATCCCTGCTCGTAACGCTCCTCAATCTATTAAGGAGGCGTACGACCGCTGGATCAAGGCCAATGATAAGGCCAAGGTCTACATTT
TGGCTAGTGTTTCTGAAGTTCTAGCCAAAAAGCACGAGGGCATGGTCTCAGCTCGTGAGATCATGAGTTCACTCCAGGAAATGTTTGGACAACCGTCTGGACAGATTCGG
CATGAATCCCTCAAATACATTTATAACTCCCGTATGAAGGAGGGGTCATCGGTGAGAGAACACGTTCTTGATCTGATGGTCCACTTCAACGTGGCTGAGATGAACGGAGC
AGTCATTGACGAGCAAAGTCAGGTATCGTTCATCCTGGAATCTCTTCCGAAGAGTTTCCTGCAATTCCGCAACAATGCGGTGATGAACAAGATAGAGTATAACCTGACTA
CTCACTACTACAAAAACTGTATTTCTTGA

mRNA sequence

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Protein sequence

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MSSSIIALLKSDRLTYENFTTWKSNLNTILIVDDVRFVLTEECPQIPARNAPQSIKEAYDRWIKANDKAKVYILASVSEVLAKKHEGMVSAREIMSSLQEMFGQPSGQIR
HESLKYIYNSRMKEGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFRNNAVMNKIEYNLTTHYYKNCIS

Tan0007461 (gene) of Snake gourd v1 genome