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Tan0007544 (gene) of Snake gourd v1 genome

Gene IDTan0007544
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionSplicing factor subunit
Genome locationLG05:21280561..21282003
RNA-Seq ExpressionTan0007544
SyntenyTan0007544
Gene Ontology termsGO:0044237 - cellular metabolic process (biological process)
GO:0140513 - nuclear protein-containing complex (cellular component)
GO:1990904 - ribonucleoprotein complex (cellular component)
InterPro domainsIPR009846 - Splicing factor 3B subunit 5/RDS3 complex subunit 10


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PSR97969.1 Splicing factor 3B, subunit 5 protein [Actinidia chinensis var. chinensis]7.1e-1660.49Show/hide
Query:  NINFQPENLQAKYVGIGHVDLNRHECVV-----SNASYVGHYPILAYFTIAENESIGRECYNFYACCHNRFSCGPQPENNE
        NIN Q E+LQAKYVG GH D++R E  V     S AS+VGHYP+LAYF IAENESIGRECYNF         CGP PE  +
Subjt:  NINFQPENLQAKYVGIGHVDLNRHECVV-----SNASYVGHYPILAYFTIAENESIGRECYNFYACCHNRFSCGPQPENNE

VVA22788.1 PREDICTED: splicing factor [Prunus dulcis]2.4e-1662.96Show/hide
Query:  NINFQPENLQAKYVGIGHVDLNRHECVV-----SNASYVGHYPILAYFTIAENESIGRECYNFYACCHNRFSCGPQPENNE
        NIN Q E+LQAKYVG GH DLNR+E  V     S ASYVGHYPILAYF +AENESIGRE YNF         CGP PE  +
Subjt:  NINFQPENLQAKYVGIGHVDLNRHECVV-----SNASYVGHYPILAYFTIAENESIGRECYNFYACCHNRFSCGPQPENNE

XP_008226897.1 PREDICTED: uncharacterized protein At4g14342 [Prunus mume]2.4e-1662.96Show/hide
Query:  NINFQPENLQAKYVGIGHVDLNRHECVV-----SNASYVGHYPILAYFTIAENESIGRECYNFYACCHNRFSCGPQPENNE
        NIN Q E+LQAKYVG GH DLNR+E  V     S ASYVGHYPILAYF +AENESIGRE YNF         CGP PE  +
Subjt:  NINFQPENLQAKYVGIGHVDLNRHECVV-----SNASYVGHYPILAYFTIAENESIGRECYNFYACCHNRFSCGPQPENNE

XP_009338695.1 PREDICTED: uncharacterized protein At4g14342-like [Pyrus x bretschneideri]7.1e-1660.49Show/hide
Query:  NINFQPENLQAKYVGIGHVDLNRHECVV-----SNASYVGHYPILAYFTIAENESIGRECYNFYACCHNRFSCGPQPENNE
        NIN Q E+LQAKYVG GH D+NR+E  V     S ASYVGHYP+LAYF +AENESIGRE YNF         CGP PE  +
Subjt:  NINFQPENLQAKYVGIGHVDLNRHECVV-----SNASYVGHYPILAYFTIAENESIGRECYNFYACCHNRFSCGPQPENNE

XP_039137772.1 uncharacterized protein At4g14342 [Dioscorea cayenensis subsp. rotundata]2.4e-1662.96Show/hide
Query:  NINFQPENLQAKYVGIGHVDLNRHECVV-----SNASYVGHYPILAYFTIAENESIGRECYNFYACCHNRFSCGPQPENNE
        NIN Q E+LQAKYVG GH DLNR E  V     S ASY+GHYP+LAYF IAENESIGRE YNF         CGP PE +E
Subjt:  NINFQPENLQAKYVGIGHVDLNRHECVV-----SNASYVGHYPILAYFTIAENESIGRECYNFYACCHNRFSCGPQPENNE

TrEMBL top hitse value%identityAlignment
A0A314XI18 Splicing factor subunit1.2e-1662.96Show/hide
Query:  NINFQPENLQAKYVGIGHVDLNRHECVV-----SNASYVGHYPILAYFTIAENESIGRECYNFYACCHNRFSCGPQPENNE
        NIN Q E+LQAKYVG GH DLNR+E  V     S ASYVGHYPILAYF +AENESIGRE YNF         CGP PE  +
Subjt:  NINFQPENLQAKYVGIGHVDLNRHECVV-----SNASYVGHYPILAYFTIAENESIGRECYNFYACCHNRFSCGPQPENNE

A0A5E4F6J1 Splicing factor subunit1.2e-1662.96Show/hide
Query:  NINFQPENLQAKYVGIGHVDLNRHECVV-----SNASYVGHYPILAYFTIAENESIGRECYNFYACCHNRFSCGPQPENNE
        NIN Q E+LQAKYVG GH DLNR+E  V     S ASYVGHYPILAYF +AENESIGRE YNF         CGP PE  +
Subjt:  NINFQPENLQAKYVGIGHVDLNRHECVV-----SNASYVGHYPILAYFTIAENESIGRECYNFYACCHNRFSCGPQPENNE

A0A5E4FAN3 PREDICTED: splicing factor1.2e-1662.96Show/hide
Query:  NINFQPENLQAKYVGIGHVDLNRHECVV-----SNASYVGHYPILAYFTIAENESIGRECYNFYACCHNRFSCGPQPENNE
        NIN Q E+LQAKYVG GH DLNR+E  V     S ASYVGHYPILAYF +AENESIGRE YNF         CGP PE  +
Subjt:  NINFQPENLQAKYVGIGHVDLNRHECVV-----SNASYVGHYPILAYFTIAENESIGRECYNFYACCHNRFSCGPQPENNE

A0A6J5UQ03 Splicing factor subunit1.2e-1662.96Show/hide
Query:  NINFQPENLQAKYVGIGHVDLNRHECVV-----SNASYVGHYPILAYFTIAENESIGRECYNFYACCHNRFSCGPQPENNE
        NIN Q E+LQAKYVG GH DLNR+E  V     S ASYVGHYPILAYF +AENESIGRE YNF         CGP PE  +
Subjt:  NINFQPENLQAKYVGIGHVDLNRHECVV-----SNASYVGHYPILAYFTIAENESIGRECYNFYACCHNRFSCGPQPENNE

A0A6P5S5G1 Splicing factor subunit1.2e-1662.96Show/hide
Query:  NINFQPENLQAKYVGIGHVDLNRHECVV-----SNASYVGHYPILAYFTIAENESIGRECYNFYACCHNRFSCGPQPENNE
        NIN Q E+LQAKYVG GH DLNR+E  V     S ASYVGHYPILAYF +AENESIGRE YNF         CGP PE  +
Subjt:  NINFQPENLQAKYVGIGHVDLNRHECVV-----SNASYVGHYPILAYFTIAENESIGRECYNFYACCHNRFSCGPQPENNE

SwissProt top hitse value%identityAlignment
P58728 Uncharacterized protein At4g143426.7e-1759.26Show/hide
Query:  NINFQPENLQAKYVGIGHVDLNRHECVV-----SNASYVGHYPILAYFTIAENESIGRECYNFYACCHNRFSCGPQPENNE
        NIN Q E+LQAKYVG GH DL+R E  V     S ASY+GHYP+L+YF IAENESIGRE YNF         CG  PE  E
Subjt:  NINFQPENLQAKYVGIGHVDLNRHECVV-----SNASYVGHYPILAYFTIAENESIGRECYNFYACCHNRFSCGPQPENNE

Q55BF5 Splicing factor 3B subunit 51.3e-0942.31Show/hide
Query:  NINFQPENLQAKYVGIGHVDLNRHECVV-----SNASYVGHYPILAYFTIAENESIGRECYNFYACCHNRFSCGPQPE
        ++N Q E+LQ +YVG GH D+++HE +      S +S++GH   L+ F+IAENES+GR  YN      +   CGP P+
Subjt:  NINFQPENLQAKYVGIGHVDLNRHECVV-----SNASYVGHYPILAYFTIAENESIGRECYNFYACCHNRFSCGPQPE

Q56K13 Splicing factor 3B subunit 59.7e-0842.68Show/hide
Query:  INFQPENLQAKYVGIGHVDLNRHECVV-----SNASYVGHYPILAYFTIAENESIGRECYNFYACCHNRFSCGP---QPENN
        I+ Q E+LQ+KY+G GH D  + E +V     S  SY+GH+ +L YF IAENES  R  +N          CGP   +PE N
Subjt:  INFQPENLQAKYVGIGHVDLNRHECVV-----SNASYVGHYPILAYFTIAENESIGRECYNFYACCHNRFSCGP---QPENN

Q9LW64 Uncharacterized protein At3g233251.5e-1658.02Show/hide
Query:  NINFQPENLQAKYVGIGHVDLNRHECVV-----SNASYVGHYPILAYFTIAENESIGRECYNFYACCHNRFSCGPQPENNE
        NIN Q E+LQAKYVG GH DL+R E  V     S ASY+GHYP+L+YF IAENESIGRE YNF         CG  PE  +
Subjt:  NINFQPENLQAKYVGIGHVDLNRHECVV-----SNASYVGHYPILAYFTIAENESIGRECYNFYACCHNRFSCGPQPENNE

Q9VHI4 Splicing factor 3B subunit 52.7e-1046.91Show/hide
Query:  NINFQPENLQAKYVGIGHVDLNRHECVV-----SNASYVGHYPILAYFTIAENESIGRECYNFYACCHNRFSCGPQPENNE
        NI+ Q E+LQ+KY+G GH D  + E +      S ASY+GHY IL YF IAENES  R  +N          CGP PE  E
Subjt:  NINFQPENLQAKYVGIGHVDLNRHECVV-----SNASYVGHYPILAYFTIAENESIGRECYNFYACCHNRFSCGPQPENNE

Arabidopsis top hitse value%identityAlignment
AT3G23325.1 Splicing factor 3B subunit 5/RDS3 complex subunit 101.1e-1758.02Show/hide
Query:  NINFQPENLQAKYVGIGHVDLNRHECVV-----SNASYVGHYPILAYFTIAENESIGRECYNFYACCHNRFSCGPQPENNE
        NIN Q E+LQAKYVG GH DL+R E  V     S ASY+GHYP+L+YF IAENESIGRE YNF         CG  PE  +
Subjt:  NINFQPENLQAKYVGIGHVDLNRHECVV-----SNASYVGHYPILAYFTIAENESIGRECYNFYACCHNRFSCGPQPENNE

AT4G14342.1 Splicing factor 3B subunit 5/RDS3 complex subunit 104.7e-1859.26Show/hide
Query:  NINFQPENLQAKYVGIGHVDLNRHECVV-----SNASYVGHYPILAYFTIAENESIGRECYNFYACCHNRFSCGPQPENNE
        NIN Q E+LQAKYVG GH DL+R E  V     S ASY+GHYP+L+YF IAENESIGRE YNF         CG  PE  E
Subjt:  NINFQPENLQAKYVGIGHVDLNRHECVV-----SNASYVGHYPILAYFTIAENESIGRECYNFYACCHNRFSCGPQPENNE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATAATGTTGTAAGTGTCGCATGGGGATATCAAACCTCTGAATTGATATTTGAAATAAGGTATGAATTGTTTGATCATGGCTTCGATCTTCAATGCAGGCCAGTGAT
AGATTTAAACATAAATTTCCAGCCTGAGAACCTACAGGCTAAATATGTGGGAATTGGGCATGTCGACTTAAATAGACATGAATGTGTTGTGAGTAATGCATCATATGTTG
GACACTACCCCATTCTAGCTTACTTCACTATAGCAGAAAATGAATCCATTGGAAGAGAATGCTACAATTTTTATGCATGTTGCCACAACCGGTTCTCTTGTGGTCCTCAA
CCTGAAAATAATGAATCATAA
mRNA sequenceShow/hide mRNA sequence
ATGAATAATGTTGTAAGTGTCGCATGGGGATATCAAACCTCTGAATTGATATTTGAAATAAGGTATGAATTGTTTGATCATGGCTTCGATCTTCAATGCAGGCCAGTGAT
AGATTTAAACATAAATTTCCAGCCTGAGAACCTACAGGCTAAATATGTGGGAATTGGGCATGTCGACTTAAATAGACATGAATGTGTTGTGAGTAATGCATCATATGTTG
GACACTACCCCATTCTAGCTTACTTCACTATAGCAGAAAATGAATCCATTGGAAGAGAATGCTACAATTTTTATGCATGTTGCCACAACCGGTTCTCTTGTGGTCCTCAA
CCTGAAAATAATGAATCATAA
Protein sequenceShow/hide protein sequence
MNNVVSVAWGYQTSELIFEIRYELFDHGFDLQCRPVIDLNINFQPENLQAKYVGIGHVDLNRHECVVSNASYVGHYPILAYFTIAENESIGRECYNFYACCHNRFSCGPQ
PENNES