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Tan0007549 (gene) of Snake gourd v1 genome

Gene IDTan0007549
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRibosomal protein L18ae family
Genome locationLG08:512763..515881
RNA-Seq ExpressionTan0007549
SyntenyTan0007549
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6599519.1 60S ribosomal protein L18a-like protein, partial [Cucurbita argyrosperma subsp. sororia]5.4e-6091.04Show/hide
Query:  MDSSAKIEQTVQLVKSASDKHLDLLRPSARICSIFKGQEKDASDNIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYATILYFWN
        MD +AKI+ TVQLVKS SD+HLDLLRPSARICSIFKGQ KDASD+IRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYATILYFWN
Subjt:  MDSSAKIEQTVQLVKSASDKHLDLLRPSARICSIFKGQEKDASDNIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYATILYFWN

Query:  ARRDPRERAGLAASAIAALACSVVLLVVVAVLLL
        +RRDPRERAGLAAS+IAALACSV+LLVVVAV LL
Subjt:  ARRDPRERAGLAASAIAALACSVVLLVVVAVLLL

XP_008459564.1 PREDICTED: uncharacterized protein LOC103498658 [Cucumis melo]1.2e-5989.47Show/hide
Query:  MDSSAKIEQTVQLVKSASDKHLDLLRPSARICSIFKGQEKDASDNIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYATILYFWN
        MD + K++QTVQLVKS SDKHLDLLRPSARICSIFKGQ KDA D+IRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGF FP+MWYYATILYFWN
Subjt:  MDSSAKIEQTVQLVKSASDKHLDLLRPSARICSIFKGQEKDASDNIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYATILYFWN

Query:  ARRDPRERAGLAASAIAALACSVVLLVVVAVLL
        ARRDPRERAGLAASAIAALACS++LL+VVAVLL
Subjt:  ARRDPRERAGLAASAIAALACSVVLLVVVAVLL

XP_022946692.1 uncharacterized protein LOC111450686 [Cucurbita moschata]7.1e-6091.04Show/hide
Query:  MDSSAKIEQTVQLVKSASDKHLDLLRPSARICSIFKGQEKDASDNIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYATILYFWN
        MD +AKI+ TVQLVKS SD+HLDLLRPSARICSIFKGQ KDASD+IRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYATILYFWN
Subjt:  MDSSAKIEQTVQLVKSASDKHLDLLRPSARICSIFKGQEKDASDNIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYATILYFWN

Query:  ARRDPRERAGLAASAIAALACSVVLLVVVAVLLL
        +RRDPRERAGLAAS+IAALACSV+LLVVVAV LL
Subjt:  ARRDPRERAGLAASAIAALACSVVLLVVVAVLLL

XP_022999414.1 uncharacterized protein LOC111493795 [Cucurbita maxima]2.1e-5990.3Show/hide
Query:  MDSSAKIEQTVQLVKSASDKHLDLLRPSARICSIFKGQEKDASDNIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYATILYFWN
        MD +AKI+ TVQLVKS SD+HLDLLRP+ARICSIFKGQ KDASD+IRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYATILYFWN
Subjt:  MDSSAKIEQTVQLVKSASDKHLDLLRPSARICSIFKGQEKDASDNIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYATILYFWN

Query:  ARRDPRERAGLAASAIAALACSVVLLVVVAVLLL
        +RRDPRERAGLAAS+IAALACSV+LLVVVAV LL
Subjt:  ARRDPRERAGLAASAIAALACSVVLLVVVAVLLL

XP_038889607.1 uncharacterized protein LOC120079478 [Benincasa hispida]1.1e-6091.73Show/hide
Query:  MDSSAKIEQTVQLVKSASDKHLDLLRPSARICSIFKGQEKDASDNIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYATILYFWN
        MD + KI+QTVQLVKS SDKHLDLLRPSARICSIFKGQ KDASD+IRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGF FP+MWYYATILYFWN
Subjt:  MDSSAKIEQTVQLVKSASDKHLDLLRPSARICSIFKGQEKDASDNIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYATILYFWN

Query:  ARRDPRERAGLAASAIAALACSVVLLVVVAVLL
        ARRDPRERAGLAASAIAALACS++LLVVVAVLL
Subjt:  ARRDPRERAGLAASAIAALACSVVLLVVVAVLL

TrEMBL top hitse value%identityAlignment
A0A0A0LKM2 Uncharacterized protein5.0e-5987.97Show/hide
Query:  MDSSAKIEQTVQLVKSASDKHLDLLRPSARICSIFKGQEKDASDNIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYATILYFWN
        MD + K++QTVQLVKS SDKHLDLLRPSARICSIFKGQ KDA D+IRSKYTLLRDVED+QVGLYDKPLPCFGCGIGWFSFLLGF FP++WYYATILYFWN
Subjt:  MDSSAKIEQTVQLVKSASDKHLDLLRPSARICSIFKGQEKDASDNIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYATILYFWN

Query:  ARRDPRERAGLAASAIAALACSVVLLVVVAVLL
        ARRDPRERAGLAASAIAALACS++LL+VVAVLL
Subjt:  ARRDPRERAGLAASAIAALACSVVLLVVVAVLL

A0A1S3CAZ9 uncharacterized protein LOC1034986585.8e-6089.47Show/hide
Query:  MDSSAKIEQTVQLVKSASDKHLDLLRPSARICSIFKGQEKDASDNIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYATILYFWN
        MD + K++QTVQLVKS SDKHLDLLRPSARICSIFKGQ KDA D+IRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGF FP+MWYYATILYFWN
Subjt:  MDSSAKIEQTVQLVKSASDKHLDLLRPSARICSIFKGQEKDASDNIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYATILYFWN

Query:  ARRDPRERAGLAASAIAALACSVVLLVVVAVLL
        ARRDPRERAGLAASAIAALACS++LL+VVAVLL
Subjt:  ARRDPRERAGLAASAIAALACSVVLLVVVAVLL

A0A5D3CGZ6 60S ribosomal protein L18a-15.8e-6089.47Show/hide
Query:  MDSSAKIEQTVQLVKSASDKHLDLLRPSARICSIFKGQEKDASDNIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYATILYFWN
        MD + K++QTVQLVKS SDKHLDLLRPSARICSIFKGQ KDA D+IRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGF FP+MWYYATILYFWN
Subjt:  MDSSAKIEQTVQLVKSASDKHLDLLRPSARICSIFKGQEKDASDNIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYATILYFWN

Query:  ARRDPRERAGLAASAIAALACSVVLLVVVAVLL
        ARRDPRERAGLAASAIAALACS++LL+VVAVLL
Subjt:  ARRDPRERAGLAASAIAALACSVVLLVVVAVLL

A0A6J1G4J6 uncharacterized protein LOC1114506863.4e-6091.04Show/hide
Query:  MDSSAKIEQTVQLVKSASDKHLDLLRPSARICSIFKGQEKDASDNIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYATILYFWN
        MD +AKI+ TVQLVKS SD+HLDLLRPSARICSIFKGQ KDASD+IRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYATILYFWN
Subjt:  MDSSAKIEQTVQLVKSASDKHLDLLRPSARICSIFKGQEKDASDNIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYATILYFWN

Query:  ARRDPRERAGLAASAIAALACSVVLLVVVAVLLL
        +RRDPRERAGLAAS+IAALACSV+LLVVVAV LL
Subjt:  ARRDPRERAGLAASAIAALACSVVLLVVVAVLLL

A0A6J1KAT7 uncharacterized protein LOC1114937951.0e-5990.3Show/hide
Query:  MDSSAKIEQTVQLVKSASDKHLDLLRPSARICSIFKGQEKDASDNIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYATILYFWN
        MD +AKI+ TVQLVKS SD+HLDLLRP+ARICSIFKGQ KDASD+IRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYATILYFWN
Subjt:  MDSSAKIEQTVQLVKSASDKHLDLLRPSARICSIFKGQEKDASDNIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYATILYFWN

Query:  ARRDPRERAGLAASAIAALACSVVLLVVVAVLLL
        +RRDPRERAGLAAS+IAALACSV+LLVVVAV LL
Subjt:  ARRDPRERAGLAASAIAALACSVVLLVVVAVLLL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G54217.1 Ribosomal protein L18ae family1.3e-2264.04Show/hide
Query:  RSKYTLLR-DVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYATILYFWN-ARRDPRERAGLAASAIAALACSVVLLVVVAVLL
        + KY L+R D EDS++G + KPLPCFG GIGWFSFLLGF+FP  WY AT LY  +   RDPRER+GLAASAIAAL  SV L++ V VL+
Subjt:  RSKYTLLR-DVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYATILYFWN-ARRDPRERAGLAASAIAALACSVVLLVVVAVLL

AT1G54217.2 Ribosomal protein L18ae family4.3e-2361.05Show/hide
Query:  DASDNIRSKYTLLR-DVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYATILYFWN-ARRDPRERAGLAASAIAALACSVVLLVVVAVLL
        D  +  + KY L+R D EDS++G + KPLPCFG GIGWFSFLLGF+FP  WY AT LY  +   RDPRER+GLAASAIAAL  SV L++ V VL+
Subjt:  DASDNIRSKYTLLR-DVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYATILYFWN-ARRDPRERAGLAASAIAALACSVVLLVVVAVLL

AT4G26060.1 Ribosomal protein L18ae family3.2e-3460.33Show/hide
Query:  TVQLVKSASDKHLDLLRPSARICSIFKGQEKDASDNIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYATILYFWN-ARRDPRER
        + +LVKS +DKH  L+RP A+  S      KDA    + +YTL++DV++ + G+YDKPLPCFGCGIGWFSFLLGF+FP +WYYAT+LYF N  R+DPRER
Subjt:  TVQLVKSASDKHLDLLRPSARICSIFKGQEKDASDNIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYATILYFWN-ARRDPRER

Query:  AGLAASAIAALACSVVLLVVV
        AGLAASAI A+  S++LLV+V
Subjt:  AGLAASAIAALACSVVLLVVV

AT5G57060.1 FUNCTIONS IN: molecular_function unknown1.8e-3254.48Show/hide
Query:  MDSSAKI---EQTVQLVKSASDKHLDLLRPSARICSIFKGQEKDASDNIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYATILY
        MD ++K        +LVK  +D+H  L++ ++R  S      KDA    + +YTL++DV+D + G YDKPLPCFGCGIGWFSFLLGF+FP +WYYA  LY
Subjt:  MDSSAKI---EQTVQLVKSASDKHLDLLRPSARICSIFKGQEKDASDNIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYATILY

Query:  FWN-ARRDPRERAGLAASAIAALACSVVLLVVVA
        F N  R+DPRERAGLAASAI A+  S+VLLV+ A
Subjt:  FWN-ARRDPRERAGLAASAIAALACSVVLLVVVA

AT5G57060.2 BEST Arabidopsis thaliana protein match is: Ribosomal protein L18ae family (TAIR:AT4G26060.1)8.1e-3067.39Show/hide
Query:  KDASDNIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYATILYFWN-ARRDPRERAGLAASAIAALACSVVLLVVVA
        KDA    + +YTL++DV+D + G YDKPLPCFGCGIGWFSFLLGF+FP +WYYA  LYF N  R+DPRERAGLAASAI A+  S+VLLV+ A
Subjt:  KDASDNIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYATILYFWN-ARRDPRERAGLAASAIAALACSVVLLVVVA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTCAAGTGCAAAAATTGAGCAGACGGTGCAACTGGTGAAATCGGCCTCTGATAAGCATCTTGATCTTTTGAGGCCATCTGCCCGAATTTGTTCAATATTCAAAGG
CCAAGAAAAAGATGCTTCGGACAATATAAGGAGCAAGTATACCCTTCTTAGAGACGTAGAGGATTCTCAAGTAGGGCTATATGACAAACCTCTCCCATGTTTTGGCTGTG
GCATAGGATGGTTTTCTTTCCTTCTCGGGTTTTTGTTCCCAGTAATGTGGTACTATGCCACAATTCTCTACTTCTGGAACGCCCGAAGAGATCCAAGGGAACGAGCTGGA
TTAGCTGCATCTGCCATTGCTGCACTTGCTTGTTCAGTTGTCTTGTTAGTCGTCGTAGCTGTTCTCCTATTATAG
mRNA sequenceShow/hide mRNA sequence
GAGAATTTCTTTTTTAAAAAAAAAAATCTACAAATAGAGAGAATTATGGTATTGGTGTTGGTGATTATGTAAAAAAAGAAAAGGAAATTTTTATTTTGAGGCTTTCGTTA
TTTTTCAAGTCTCACAAACGAGGGAGACAAATTTTCTCAACGTTTCGCTGATGAAAGATGAAGTTGATCGTTGCTTGACGTTTAAATTTCATTCTTAGTTTAAGAAAAGC
GTGTTCGTTTGTTCATTCTTCCGCCAATTCCATCTCTGATCCGTGGAAAGCGAGAGAGATTGCTGTTTCAGTCGCTTCCACTCACCTCTTCATCAATTCGGTTGTAGAAA
GTGGATATTGCAAACTTGAAGAGTTCGTCCTTCCATAAACGCCAGCTTCAACATGGATTCAAGTGCAAAAATTGAGCAGACGGTGCAACTGGTGAAATCGGCCTCTGATA
AGCATCTTGATCTTTTGAGGCCATCTGCCCGAATTTGTTCAATATTCAAAGGCCAAGAAAAAGATGCTTCGGACAATATAAGGAGCAAGTATACCCTTCTTAGAGACGTA
GAGGATTCTCAAGTAGGGCTATATGACAAACCTCTCCCATGTTTTGGCTGTGGCATAGGATGGTTTTCTTTCCTTCTCGGGTTTTTGTTCCCAGTAATGTGGTACTATGC
CACAATTCTCTACTTCTGGAACGCCCGAAGAGATCCAAGGGAACGAGCTGGATTAGCTGCATCTGCCATTGCTGCACTTGCTTGTTCAGTTGTCTTGTTAGTCGTCGTAG
CTGTTCTCCTATTATAGCCCCCGTCTCGACGATTGAAACTGCATTCTGTTTGCCTCTTCAGCCTTGCCAATACAGTCTCGAATAGAACAGGTTCCCTGGATGTGCAGATA
AAGATTTAGGGGTTCTGTTGCGTGACAATGTTGACTTCTGCTACTTTTCTTTGCAAAGAATGTATATGTTTATATATCATATTTACACATATTTGCCACCTCTTTCAAAA
GAGAGTTGTCGCATTTGTAATACACATGAATATGTAATACATGGATTTTGTTACCTCACGTGTTTTTATATTTATATCAATAAGAACTAAGATCCCTCTATCTTTAAAAA
Protein sequenceShow/hide protein sequence
MDSSAKIEQTVQLVKSASDKHLDLLRPSARICSIFKGQEKDASDNIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYATILYFWNARRDPRERAG
LAASAIAALACSVVLLVVVAVLLL