; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0007551 (gene) of Snake gourd v1 genome

Gene IDTan0007551
OrganismTrichosanthes anguina (Snake gourd v1)
Descriptionexosome complex component RRP41 homolog
Genome locationLG04:3475972..3479695
RNA-Seq ExpressionTan0007551
SyntenyTan0007551
Gene Ontology termsGO:0016075 - rRNA catabolic process (biological process)
GO:0034427 - nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' (biological process)
GO:0034475 - U4 snRNA 3'-end processing (biological process)
GO:0071028 - nuclear mRNA surveillance (biological process)
GO:0071051 - polyadenylation-dependent snoRNA 3'-end processing (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0000176 - nuclear exosome (RNase complex) (cellular component)
GO:0000177 - cytoplasmic exosome (RNase complex) (cellular component)
GO:0005730 - nucleolus (cellular component)
GO:0004527 - exonuclease activity (molecular function)
GO:0009022 - tRNA nucleotidyltransferase activity (molecular function)
InterPro domainsIPR001247 - Exoribonuclease, phosphorolytic domain 1
IPR015847 - Exoribonuclease, phosphorolytic domain 2
IPR020568 - Ribosomal protein S5 domain 2-type fold
IPR027408 - PNPase/RNase PH domain superfamily
IPR036345 - Exoribonuclease, PH domain 2 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF3964871.1 hypothetical protein CMV_010887 [Castanea mollissima]2.4e-12292.5Show/hide
Query:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR
        MEFVSPEGLRLDGRRPMEMRQIRAEIGAV+KADGSA+FEMGNTKV+AAVYGPREVQNR+QQ+++QALVRCEY+MANFSTGDRMRKPKGDRRSTEISLVIR
Subjt:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR

Query:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVSVGFLPKLDKITLLQMDAK
        QTME CILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRD+VTSCS+GYLNSTPLLDLNYVEDSAGGPDV+VGFLPKLDK+TLLQMD+K
Subjt:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVSVGFLPKLDKITLLQMDAK

Query:  LPIDIFENVMQLAIEGCKAVANYIREVMLENTKKLEYCRG
        LPIDIFENVMQLAIEGCKA+ANYIRE+MLENTK+LEY RG
Subjt:  LPIDIFENVMQLAIEGCKAVANYIREVMLENTKKLEYCRG

XP_022157614.1 exosome complex component RRP41 homolog [Momordica charantia]6.6e-12595.44Show/hide
Query:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR
        MEFVSPEGLR DGRRPMEMRQIR EIGAVSKADGSA+FEMGNTKV+AAVYGPREVQNRSQQ+S+QALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR
Subjt:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR

Query:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVSVGFLPKLDKITLLQMDAK
        QTMEECILTHLMPRSQIDIF+QVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDV+VGFLPKLDK+TLLQMDAK
Subjt:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVSVGFLPKLDKITLLQMDAK

Query:  LPIDIFENVMQLAIEGCKAVANYIREVMLENTKKLEYCRGA
        LPIDIFENVMQLAIEGCKAVA+YIREVMLENTKKLEY RGA
Subjt:  LPIDIFENVMQLAIEGCKAVANYIREVMLENTKKLEYCRGA

XP_022941604.1 exosome complex component RRP41 homolog [Cucurbita moschata]2.9e-12897.51Show/hide
Query:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR
        MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSA+FEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR
Subjt:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR

Query:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVSVGFLPKLDKITLLQMDAK
        QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDV+VGFLPKLDK+TLLQMD+K
Subjt:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVSVGFLPKLDKITLLQMDAK

Query:  LPIDIFENVMQLAIEGCKAVANYIREVMLENTKKLEYCRGA
        LP+DIFENVMQLAIEGCKAVANYIREVMLE+TKKLEYCRGA
Subjt:  LPIDIFENVMQLAIEGCKAVANYIREVMLENTKKLEYCRGA

XP_030944786.1 exosome complex component RRP41 homolog [Quercus lobata]2.4e-12292.5Show/hide
Query:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR
        MEFVSPEGLRLDGRRPMEMRQIRAEIGAV+KADGSA+FEMGNTKV+AAVYGPREVQNR+QQ+++QALVRCEY+MANFSTGDRMRKPKGDRRSTEISLVIR
Subjt:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR

Query:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVSVGFLPKLDKITLLQMDAK
        QTME CILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRD+VTSCS+GYLNSTPLLDLNYVEDSAGGPDV+VGFLPKLDK+TLLQMD+K
Subjt:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVSVGFLPKLDKITLLQMDAK

Query:  LPIDIFENVMQLAIEGCKAVANYIREVMLENTKKLEYCRG
        LPIDIFENVMQLAIEGCKA+ANYIRE+MLENTK+LEY RG
Subjt:  LPIDIFENVMQLAIEGCKAVANYIREVMLENTKKLEYCRG

XP_038891797.1 exosome complex component RRP41 homolog [Benincasa hispida]1.5e-12495.82Show/hide
Query:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR
        MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKA+GSA+FEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR
Subjt:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR

Query:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVSVGFLPKLDKITLLQMDAK
        QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDV+VGFLPKLDK+TLLQMDAK
Subjt:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVSVGFLPKLDKITLLQMDAK

Query:  LPIDIFENVMQLAIEGCKAVANYIREVMLENTKKLEYCR
        LPID+FENVMQLAIEGCKA+A+YIREVML+NTK+LEY R
Subjt:  LPIDIFENVMQLAIEGCKAVANYIREVMLENTKKLEYCR

TrEMBL top hitse value%identityAlignment
A0A5B6YT64 Putative exosome complex component RRP41 (Fragment)3.3e-12292.92Show/hide
Query:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR
        ME+VSPEGLRLDGRRPMEMRQIRAEIGAV+KADGSA+FEMGNTKV+AAVYGPREVQNRSQQ+++QALVRCEY+MANFSTGDRMRKPKGDRRSTEISLVIR
Subjt:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR

Query:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVSVGFLPKLDKITLLQMDAK
        QTME CILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRD+VTSCSAGYLNSTPLLDLNYVEDSAGGPDV+VG LPKLDK+TLLQMDAK
Subjt:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVSVGFLPKLDKITLLQMDAK

Query:  LPIDIFENVMQLAIEGCKAVANYIREVMLENTKKLEYCRG
        LP+DIFENVMQLAIEGCKAVANYIREV+LENTK+LEY RG
Subjt:  LPIDIFENVMQLAIEGCKAVANYIREVMLENTKKLEYCRG

A0A6J1DWZ5 exosome complex component RRP41 homolog3.2e-12595.44Show/hide
Query:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR
        MEFVSPEGLR DGRRPMEMRQIR EIGAVSKADGSA+FEMGNTKV+AAVYGPREVQNRSQQ+S+QALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR
Subjt:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR

Query:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVSVGFLPKLDKITLLQMDAK
        QTMEECILTHLMPRSQIDIF+QVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDV+VGFLPKLDK+TLLQMDAK
Subjt:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVSVGFLPKLDKITLLQMDAK

Query:  LPIDIFENVMQLAIEGCKAVANYIREVMLENTKKLEYCRGA
        LPIDIFENVMQLAIEGCKAVA+YIREVMLENTKKLEY RGA
Subjt:  LPIDIFENVMQLAIEGCKAVANYIREVMLENTKKLEYCRGA

A0A6J1FNX1 exosome complex component RRP41 homolog1.4e-12897.51Show/hide
Query:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR
        MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSA+FEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR
Subjt:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR

Query:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVSVGFLPKLDKITLLQMDAK
        QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDV+VGFLPKLDK+TLLQMD+K
Subjt:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVSVGFLPKLDKITLLQMDAK

Query:  LPIDIFENVMQLAIEGCKAVANYIREVMLENTKKLEYCRGA
        LP+DIFENVMQLAIEGCKAVANYIREVMLE+TKKLEYCRGA
Subjt:  LPIDIFENVMQLAIEGCKAVANYIREVMLENTKKLEYCRGA

A0A6J1JKC7 exosome complex component RRP41 homolog1.4e-12897.51Show/hide
Query:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR
        MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSA+FEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR
Subjt:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR

Query:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVSVGFLPKLDKITLLQMDAK
        QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDV+VGFLPKLDK+TLLQMD+K
Subjt:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVSVGFLPKLDKITLLQMDAK

Query:  LPIDIFENVMQLAIEGCKAVANYIREVMLENTKKLEYCRGA
        LP+DIFENVMQLAIEGCKAVANYIREVMLE+TKKLEYCRGA
Subjt:  LPIDIFENVMQLAIEGCKAVANYIREVMLENTKKLEYCRGA

A0A7N2MX64 Uncharacterized protein1.1e-12292.5Show/hide
Query:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR
        MEFVSPEGLRLDGRRPMEMRQIRAEIGAV+KADGSA+FEMGNTKV+AAVYGPREVQNR+QQ+++QALVRCEY+MANFSTGDRMRKPKGDRRSTEISLVIR
Subjt:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR

Query:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVSVGFLPKLDKITLLQMDAK
        QTME CILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRD+VTSCS+GYLNSTPLLDLNYVEDSAGGPDV+VGFLPKLDK+TLLQMD+K
Subjt:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVSVGFLPKLDKITLLQMDAK

Query:  LPIDIFENVMQLAIEGCKAVANYIREVMLENTKKLEYCRG
        LPIDIFENVMQLAIEGCKA+ANYIRE+MLENTK+LEY RG
Subjt:  LPIDIFENVMQLAIEGCKAVANYIREVMLENTKKLEYCRG

SwissProt top hitse value%identityAlignment
Q5JIR6 Exosome complex component Rrp412.6e-5548.94Show/hide
Query:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR
        ++ +   G R+DGR+  E+R I+ E+G +  ADGSA  E G  KVLAAVYGPRE+  +  Q  ++A++R  Y MA FS  +R +KP  DRRS EIS VIR
Subjt:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR

Query:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVSVGFLPKLDKITLLQMDAK
          +E  +L H+ PR+ ID+F+++LQAD GTR A I AA+LALADAGIPM+D+V +C+AG ++   +LDLN  ED+ G  DV V  +P  + ITLLQMD  
Subjt:  QTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVSVGFLPKLDKITLLQMDAK

Query:  LPIDIFENVMQLAIEGCKAVANYIREVMLENTKKL
        L  D F   ++LAI+G KAV    RE + E   K+
Subjt:  LPIDIFENVMQLAIEGCKAVANYIREVMLENTKKL

Q7YRA3 Exosome complex component RRP414.0e-6450.62Show/hide
Query:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVLAAVYGPREVQ-NRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVI
        +E +S +G R+DGRR  E+R+I+A +G  ++ADGSA  E GNTK LA VYGP E++ +R++ + ++ALV C+Y+ A FSTG+R R+P GDR+S E+ L +
Subjt:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVLAAVYGPREVQ-NRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVI

Query:  RQTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVSVGFLPKLDKITLLQMDA
        RQT E  ILT L PRSQIDI+VQVLQADGGT +AC+NAATLA+ DAGIPMRD V +CSAG+++ T L DL++VE++AGGP +++  LP   +I LL+MDA
Subjt:  RQTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVSVGFLPKLDKITLLQMDA

Query:  KLPIDIFENVMQLAIEGCKAVANYIREVMLENTKKLEYCRG
        +L  D  E V++ A    + V   +  V+ ++ ++     G
Subjt:  KLPIDIFENVMQLAIEGCKAVANYIREVMLENTKKLEYCRG

Q921I9 Exosome complex component RRP411.8e-6450.62Show/hide
Query:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVLAAVYGPREVQ-NRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVI
        +E +S +G R+DGRR  E+R+I+A +G  ++ADGSA  E GNTK LA VYGP E++ +RS+ + ++ALV C+Y+ A FSTG+R R+P GDR+S E+ L +
Subjt:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVLAAVYGPREVQ-NRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVI

Query:  RQTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVSVGFLPKLDKITLLQMDA
        RQT E  ILT L PRSQIDI+VQVLQADGGT +AC+NAATLA+ DAGIPMRD V +CSAG+++ T L DL++VE++AGGP +++  LP   +I LL+MD+
Subjt:  RQTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVSVGFLPKLDKITLLQMDA

Query:  KLPIDIFENVMQLAIEGCKAVANYIREVMLENTKKLEYCRG
        +L  D  E V++ A +  + V   +  V+ ++ ++     G
Subjt:  KLPIDIFENVMQLAIEGCKAVANYIREVMLENTKKLEYCRG

Q9NPD3 Exosome complex component RRP411.4e-6450.62Show/hide
Query:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVLAAVYGPREVQ-NRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVI
        +E +S +G R+DGRR  E+R+I+A +G  ++ADGSA  E GNTK LA VYGP E++ +R++ + ++ALV C+Y+ A FSTG+R R+P GDR+S E+ L +
Subjt:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVLAAVYGPREVQ-NRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVI

Query:  RQTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVSVGFLPKLDKITLLQMDA
        RQT E  ILT L PRSQIDI+VQVLQADGGT +AC+NAATLA+ DAGIPMRD V +CSAG+++ T L DL++VE++AGGP +++  LP   +I LL+MDA
Subjt:  RQTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVSVGFLPKLDKITLLQMDA

Query:  KLPIDIFENVMQLAIEGCKAVANYIREVMLENTKKLEYCRG
        +L  D  E V++ A +  + V   +  V+ ++ ++     G
Subjt:  KLPIDIFENVMQLAIEGCKAVANYIREVMLENTKKLEYCRG

Q9SP08 Exosome complex component RRP41 homolog6.3e-10278.93Show/hide
Query:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVLAAVYGPREVQNRSQQMSN-QALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVI
        ME+V+PEGLRLDGRR  EMRQI AE+G VSKADGSA+FEMGNTKV+AAVYGPRE+QN+SQQ  N  A+V CEY+MA FSTGDR R+ K DRRSTE+SLVI
Subjt:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVLAAVYGPREVQNRSQQMSN-QALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVI

Query:  RQTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVSVGFLPKLDKITLLQMDA
        RQTME CILT LMP SQIDIF+QVLQADGGTRSACINAATLALADAGIPMRD+  SCSAGYLNSTPLLDLNYVEDSAGG DV+VG LPKLDK++LLQMDA
Subjt:  RQTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVSVGFLPKLDKITLLQMDA

Query:  KLPIDIFENVMQLAIEGCKAVANYIREVMLENTKKLEYCRGA
        KLP++ FE V  LA EGCKA+A  IREV+ ENTK+LEY R A
Subjt:  KLPIDIFENVMQLAIEGCKAVANYIREVMLENTKKLEYCRGA

Arabidopsis top hitse value%identityAlignment
AT3G46210.1 Ribosomal protein S5 domain 2-like superfamily protein1.5e-1330.54Show/hide
Query:  RLDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEE-CIL
        R DGR P ++R +      + +  GSA +  G+TKVLAAVYGP+    +++              A F    + +  +  +   E  +++++T++  C+L
Subjt:  RLDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEE-CIL

Query:  THLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDI-VTSCSAGYLNSTPLLDLNYVED
        T + P +   + +QV+  DG      INAA  AL DAGIPM+ + V  C     N   +LD N +E+
Subjt:  THLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDI-VTSCSAGYLNSTPLLDLNYVED

AT3G46210.2 Ribosomal protein S5 domain 2-like superfamily protein1.5e-1330.54Show/hide
Query:  RLDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEE-CIL
        R DGR P ++R +      + +  GSA +  G+TKVLAAVYGP+    +++              A F    + +  +  +   E  +++++T++  C+L
Subjt:  RLDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEE-CIL

Query:  THLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDI-VTSCSAGYLNSTPLLDLNYVED
        T + P +   + +QV+  DG      INAA  AL DAGIPM+ + V  C     N   +LD N +E+
Subjt:  THLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDI-VTSCSAGYLNSTPLLDLNYVED

AT3G61620.1 3'-5'-exoribonuclease family protein4.5e-10378.93Show/hide
Query:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVLAAVYGPREVQNRSQQMSN-QALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVI
        ME+V+PEGLRLDGRR  EMRQI AE+G VSKADGSA+FEMGNTKV+AAVYGPRE+QN+SQQ  N  A+V CEY+MA FSTGDR R+ K DRRSTE+SLVI
Subjt:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVLAAVYGPREVQNRSQQMSN-QALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVI

Query:  RQTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVSVGFLPKLDKITLLQMDA
        RQTME CILT LMP SQIDIF+QVLQADGGTRSACINAATLALADAGIPMRD+  SCSAGYLNSTPLLDLNYVEDSAGG DV+VG LPKLDK++LLQMDA
Subjt:  RQTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVSVGFLPKLDKITLLQMDA

Query:  KLPIDIFENVMQLAIEGCKAVANYIREVMLENTKKLEYCRGA
        KLP++ FE V  LA EGCKA+A  IREV+ ENTK+LEY R A
Subjt:  KLPIDIFENVMQLAIEGCKAVANYIREVMLENTKKLEYCRGA

AT3G61620.2 3'-5'-exoribonuclease family protein4.5e-10378.93Show/hide
Query:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVLAAVYGPREVQNRSQQMSN-QALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVI
        ME+V+PEGLRLDGRR  EMRQI AE+G VSKADGSA+FEMGNTKV+AAVYGPRE+QN+SQQ  N  A+V CEY+MA FSTGDR R+ K DRRSTE+SLVI
Subjt:  MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVLAAVYGPREVQNRSQQMSN-QALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVI

Query:  RQTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVSVGFLPKLDKITLLQMDA
        RQTME CILT LMP SQIDIF+QVLQADGGTRSACINAATLALADAGIPMRD+  SCSAGYLNSTPLLDLNYVEDSAGG DV+VG LPKLDK++LLQMDA
Subjt:  RQTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVSVGFLPKLDKITLLQMDA

Query:  KLPIDIFENVMQLAIEGCKAVANYIREVMLENTKKLEYCRGA
        KLP++ FE V  LA EGCKA+A  IREV+ ENTK+LEY R A
Subjt:  KLPIDIFENVMQLAIEGCKAVANYIREVMLENTKKLEYCRGA

AT4G27490.1 3'-5'-exoribonuclease family protein5.6e-2128.38Show/hide
Query:  RLDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILT
        R DGR   + R    + GAVS A GSA  E GNTKV+ +V+GPRE   ++   S+   + C  +  NF++    +         E S ++ + +E  I+ 
Subjt:  RLDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILT

Query:  HLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVSVGFLPKLDKITLLQMDAKLPIDIFENV
           P++ +D+F  VL++ G   S  I+ A+LALADAGI M D++T+ S   +  + ++D    E+        +  +P   +IT L +  +         
Subjt:  HLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVSVGFLPKLDKITLLQMDAKLPIDIFENV

Query:  MQLAIEGCKAVANYIREVMLEN
        MQL ++    +   +R+ + ++
Subjt:  MQLAIEGCKAVANYIREVMLEN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGTTCGTGAGCCCTGAAGGACTTCGCTTAGACGGTCGCCGTCCCATGGAGATGAGGCAAATCCGAGCGGAAATTGGCGCCGTTTCTAAAGCAGATGGTTCTGCTAT
TTTTGAGATGGGTAACACCAAAGTTCTTGCTGCTGTATATGGTCCTAGAGAGGTTCAAAATAGGAGTCAACAAATGAGCAACCAAGCACTGGTTCGTTGTGAGTACACCA
TGGCTAATTTCAGTACTGGAGATCGCATGAGAAAACCCAAGGGTGACAGGCGATCCACAGAGATATCTTTAGTTATTCGCCAGACAATGGAGGAGTGCATTCTAACACAT
TTAATGCCTCGGTCTCAGATAGATATTTTTGTCCAAGTTCTTCAAGCAGATGGAGGTACCAGATCAGCATGTATCAACGCTGCCACTTTAGCGCTTGCTGATGCTGGAAT
TCCCATGCGAGATATTGTTACTTCCTGCAGTGCCGGATACCTTAATAGCACTCCTCTGCTTGATTTGAATTATGTAGAGGATAGTGCTGGTGGCCCTGATGTCTCTGTAG
GCTTTCTACCTAAGTTGGATAAAATCACTCTTCTTCAGATGGATGCTAAATTACCTATTGATATATTTGAGAATGTCATGCAACTAGCAATTGAGGGTTGCAAAGCCGTA
GCTAACTACATTCGAGAAGTTATGTTAGAGAATACGAAAAAACTCGAATACTGCCGTGGGGCATAG
mRNA sequenceShow/hide mRNA sequence
CGAATGCCAACCTCTGCTGCCGCACCACCACTTTTTATATCTTCTCTCTCTTCAATTCTAAAACCCTTTGCAACCTTGCCGCCGTGACTTCGCCGTCGTCCCTCGCTCCT
TACCGCCCAACCCTCGCCCAAACCGACGAACTAATTCTTAATCGACTTGTACCCATAACCTCGAATAGCATTCTAAGTTTGTAACATCCGTTGCGCCTTACTGTGTTTGC
AAAGATGGAGTTCGTGAGCCCTGAAGGACTTCGCTTAGACGGTCGCCGTCCCATGGAGATGAGGCAAATCCGAGCGGAAATTGGCGCCGTTTCTAAAGCAGATGGTTCTG
CTATTTTTGAGATGGGTAACACCAAAGTTCTTGCTGCTGTATATGGTCCTAGAGAGGTTCAAAATAGGAGTCAACAAATGAGCAACCAAGCACTGGTTCGTTGTGAGTAC
ACCATGGCTAATTTCAGTACTGGAGATCGCATGAGAAAACCCAAGGGTGACAGGCGATCCACAGAGATATCTTTAGTTATTCGCCAGACAATGGAGGAGTGCATTCTAAC
ACATTTAATGCCTCGGTCTCAGATAGATATTTTTGTCCAAGTTCTTCAAGCAGATGGAGGTACCAGATCAGCATGTATCAACGCTGCCACTTTAGCGCTTGCTGATGCTG
GAATTCCCATGCGAGATATTGTTACTTCCTGCAGTGCCGGATACCTTAATAGCACTCCTCTGCTTGATTTGAATTATGTAGAGGATAGTGCTGGTGGCCCTGATGTCTCT
GTAGGCTTTCTACCTAAGTTGGATAAAATCACTCTTCTTCAGATGGATGCTAAATTACCTATTGATATATTTGAGAATGTCATGCAACTAGCAATTGAGGGTTGCAAAGC
CGTAGCTAACTACATTCGAGAAGTTATGTTAGAGAATACGAAAAAACTCGAATACTGCCGTGGGGCATAGCGGGAACGGTTTTTGAGCAATCTCACTCAAAGGAAGGAGA
CTTCAGTTGTTTCTAACTGCTGTAATGGAGTAGAGATCTTATCAGGAAAGATGGGATGTTAAGTTGGTGATTCAGGATAATGAAGAAATTGGTGCCTCTTTTTCCCATCT
CCCAGTTTGTTGAATTAATTAATATCTCTCTTGCCCTAATGTACAGAATGTATTAGTTTTTGGCCATATTTCTCTAACCATCAAAAGCCTTCACTTATGGGACTGGGTTG
ATACAACAATTTTGTTTTGTCTTGTTTCCTTATTTAAACAGAAGGATAGAAGTTTGAATTCATACAATCTTTAATTCATTTGGTTAAGTTTTGATCAGTAAATTTTATAT
AAAATAAAGCTAGTTTCCATCGCC
Protein sequenceShow/hide protein sequence
MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVLAAVYGPREVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTH
LMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVSVGFLPKLDKITLLQMDAKLPIDIFENVMQLAIEGCKAV
ANYIREVMLENTKKLEYCRGA