CuGenDBv2

Gene ID	Tan0007558
Organism	Trichosanthes anguina (Snake gourd v1)
Description	RNA-directed RNA polymerase
Genome location	LG02:96821569..96833469
RNA-Seq Expression	Tan0007558
Synteny	Tan0007558
Gene Ontology terms	GO:0006508 - proteolysis (biological process) GO:0004252 - serine-type endopeptidase activity (molecular function)
InterPro domains	IPR036249 - Thioredoxin-like superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6598213.1 Type 2 DNA topoisomerase 6 subunit B-like protein, partial [Cucurbita argyrosperma subsp. sororia]

1.9e-65

81.33

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Query:  MGDPTTLDRMLSHLRSACKYYTSYPKDLGPSRVIHFTSEREFVQLLHEGYPVVVAFTIRGNYTKHLDKVLEEAAVEFYPNVKFMRVECPKYPGFCISRQR
        MGDPT LDRML HLR+ CKYYT +PKDLGPSRVIHFTSEREFVQLLHEGYPVVVAFT+RGNYTKHLDKVLEEAAVEFYP VKFMRVECPKYPGFCISRQR
Subjt:  MGDPTTLDRMLSHLRSACKYYTSYPKDLGPSRVIHFTSEREFVQLLHEGYPVVVAFTIRGNYTKHLDKVLEEAAVEFYPNVKFMRVECPKYPGFCISRQR

Query:  KEYPFMEMFHSPQQVGIAHLILCLVLASNQGKIADPSVTKYSVKVLPVSF
        KEYPF+EMFHSPQQ            AS+QGKI+DP++TKYSVKVLP ++
Subjt:  KEYPFMEMFHSPQQVGIAHLILCLVLASNQGKIADPSVTKYSVKVLPVSF

XP_022132238.1 uncharacterized protein LOC111005143 [Momordica charantia]

2.0e-67

83.33

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Query:  MGDPTTLDRMLSHLRSACKYYTSYPKDLGPSRVIHFTSEREFVQLLHEGYPVVVAFTIRGNYTKHLDKVLEEAAVEFYPNVKFMRVECPKYPGFCISRQR
        MG+PT  DRM+SHLR+ CKYYT YPKDLGPSRVIHFTSEREFVQLLHEGYPVVVAFT+RGNYTKHLDKVLEEAAVEFYPNVKFMRVECPKYPGFCISRQR
Subjt:  MGDPTTLDRMLSHLRSACKYYTSYPKDLGPSRVIHFTSEREFVQLLHEGYPVVVAFTIRGNYTKHLDKVLEEAAVEFYPNVKFMRVECPKYPGFCISRQR

Query:  KEYPFMEMFHSPQQVGIAHLILCLVLASNQGKIADPSVTKYSVKVLPVSF
        KEYPF+EMFHSPQQ            ASNQGKIADPS+TKYSVKVLP ++
Subjt:  KEYPFMEMFHSPQQVGIAHLILCLVLASNQGKIADPSVTKYSVKVLPVSF

XP_022962537.1 uncharacterized protein LOC111462937 [Cucurbita moschata]

3.5e-64

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Query:  MGDPTTLDRMLSHLRSACKYYTSYPKDLGPSRVIHFTSEREFVQLLHEGYPVVVAFTIRGNYTKHLDKVLEEAAVEFYPNVKFMRVECPKYPGFCISRQR
        MGDP  LDRML HLR+ CKYYT +PKDLGPSRVIHFTSEREFVQLLHEGYPVVVAFT+RGNYTKHLDKVLEEAAVEFYP VKFMRVECPKYPGFCISRQR
Subjt:  MGDPTTLDRMLSHLRSACKYYTSYPKDLGPSRVIHFTSEREFVQLLHEGYPVVVAFTIRGNYTKHLDKVLEEAAVEFYPNVKFMRVECPKYPGFCISRQR

Query:  KEYPFMEMFHSPQQVGIAHLILCLVLASNQGKIADPSVTKYSVKVLPVSF
        KEYPF+EMFHSP+Q            AS+QGKI+DP++TKYSVKVLP ++
Subjt:  KEYPFMEMFHSPQQVGIAHLILCLVLASNQGKIADPSVTKYSVKVLPVSF

XP_022996547.1 uncharacterized protein LOC111491762 [Cucurbita maxima]

1.9e-65

81.33

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Query:  MGDPTTLDRMLSHLRSACKYYTSYPKDLGPSRVIHFTSEREFVQLLHEGYPVVVAFTIRGNYTKHLDKVLEEAAVEFYPNVKFMRVECPKYPGFCISRQR
        MGDPT LDRML HLR+ CKYYT +PKDLGPSRVIHFTSEREFVQLLHEGYPVVVAFT+RGNYTKHLDKVLEEAAVEFYP VKFMRVECPKYPGFCISRQR
Subjt:  MGDPTTLDRMLSHLRSACKYYTSYPKDLGPSRVIHFTSEREFVQLLHEGYPVVVAFTIRGNYTKHLDKVLEEAAVEFYPNVKFMRVECPKYPGFCISRQR

Query:  KEYPFMEMFHSPQQVGIAHLILCLVLASNQGKIADPSVTKYSVKVLPVSF
        KEYPF+EMFHSPQQ            AS+QGKI+DP++TKYSVKVLP ++
Subjt:  KEYPFMEMFHSPQQVGIAHLILCLVLASNQGKIADPSVTKYSVKVLPVSF

XP_038885436.1 uncharacterized protein LOC120075825 isoform X1 [Benincasa hispida]

8.4e-66

81.33

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Query:  MGDPTTLDRMLSHLRSACKYYTSYPKDLGPSRVIHFTSEREFVQLLHEGYPVVVAFTIRGNYTKHLDKVLEEAAVEFYPNVKFMRVECPKYPGFCISRQR
        MGDPT LDR+LSHLR+ CKYYT +PKDLGPSRVIHFTSEREFVQLLHEGYPVVVAFT+RGNYTKHLDKVLEEAAVEFYPN+KFMRVECPKYPGFCISRQR
Subjt:  MGDPTTLDRMLSHLRSACKYYTSYPKDLGPSRVIHFTSEREFVQLLHEGYPVVVAFTIRGNYTKHLDKVLEEAAVEFYPNVKFMRVECPKYPGFCISRQR

Query:  KEYPFMEMFHSPQQVGIAHLILCLVLASNQGKIADPSVTKYSVKVLPVSF
        KEYPF+EMFHSPQQ            ASNQGK++D +VTKYSVKVLP ++
Subjt:  KEYPFMEMFHSPQQVGIAHLILCLVLASNQGKIADPSVTKYSVKVLPVSF

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BIH6 uncharacterized protein LOC103489940

1.1e-63

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Query:  MGDPTTLDRMLSHLRSACKYYTSYPKDLGPSRVIHFTSEREFVQLLHEGYPVVVAFTIRGNYTKHLDKVLEEAAVEFYPNVKFMRVECPKYPGFCISRQR
        MGDPT LD +L HLRS CKYYT +PKDLGPSRVIHFTSEREFVQLLHEGYPVVVAFTIR NY+KHLDKVLEEAAVEFYPNVKFMRVECPKYPGFCISRQR
Subjt:  MGDPTTLDRMLSHLRSACKYYTSYPKDLGPSRVIHFTSEREFVQLLHEGYPVVVAFTIRGNYTKHLDKVLEEAAVEFYPNVKFMRVECPKYPGFCISRQR

Query:  KEYPFMEMFHSPQQVGIAHLILCLVLASNQGKIADPSVTKYSVKVLPVSF
        KEYPF+EMFHSP+Q            AS+QGKIAD +VTKYSVKV+P ++
Subjt:  KEYPFMEMFHSPQQVGIAHLILCLVLASNQGKIADPSVTKYSVKVLPVSF

A0A5A7U4H2 Uncharacterized protein

1.4e-63

79.08

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Query:  MGDPTTLDRMLSHLRSACKYYTSYPKDLGPSRVIHFTSEREFVQLLHEGYPVVVAFTIRGNYTKHLDKVLEEAAVEFYPNVKFMRVECPKYPGFCISRQR
        MGDPT LD +L HLRS CKYYT +PKDLGPSRVIHFTSEREFVQLLHEGYPVVVAFTIR NY+KHLDKVLEEAAVEFYPNVKFMRVECPKYPGFCISRQR
Subjt:  MGDPTTLDRMLSHLRSACKYYTSYPKDLGPSRVIHFTSEREFVQLLHEGYPVVVAFTIRGNYTKHLDKVLEEAAVEFYPNVKFMRVECPKYPGFCISRQR

Query:  KEYPFMEMFHSPQQVGIAHLILCLVLASNQGKIADPSVTKYSVKVLPVSFQAL
        KEYPF+EMFHSP+Q            AS+QGKIAD +VTKYSVKV+P+   +L
Subjt:  KEYPFMEMFHSPQQVGIAHLILCLVLASNQGKIADPSVTKYSVKVLPVSFQAL

A0A6J1BSI0 uncharacterized protein LOC111005143

9.7e-68

83.33

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Query:  MGDPTTLDRMLSHLRSACKYYTSYPKDLGPSRVIHFTSEREFVQLLHEGYPVVVAFTIRGNYTKHLDKVLEEAAVEFYPNVKFMRVECPKYPGFCISRQR
        MG+PT  DRM+SHLR+ CKYYT YPKDLGPSRVIHFTSEREFVQLLHEGYPVVVAFT+RGNYTKHLDKVLEEAAVEFYPNVKFMRVECPKYPGFCISRQR
Subjt:  MGDPTTLDRMLSHLRSACKYYTSYPKDLGPSRVIHFTSEREFVQLLHEGYPVVVAFTIRGNYTKHLDKVLEEAAVEFYPNVKFMRVECPKYPGFCISRQR

Query:  KEYPFMEMFHSPQQVGIAHLILCLVLASNQGKIADPSVTKYSVKVLPVSF
        KEYPF+EMFHSPQQ            ASNQGKIADPS+TKYSVKVLP ++
Subjt:  KEYPFMEMFHSPQQVGIAHLILCLVLASNQGKIADPSVTKYSVKVLPVSF

A0A6J1HCY2 uncharacterized protein LOC111462937

1.7e-64

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Query:  MGDPTTLDRMLSHLRSACKYYTSYPKDLGPSRVIHFTSEREFVQLLHEGYPVVVAFTIRGNYTKHLDKVLEEAAVEFYPNVKFMRVECPKYPGFCISRQR
        MGDP  LDRML HLR+ CKYYT +PKDLGPSRVIHFTSEREFVQLLHEGYPVVVAFT+RGNYTKHLDKVLEEAAVEFYP VKFMRVECPKYPGFCISRQR
Subjt:  MGDPTTLDRMLSHLRSACKYYTSYPKDLGPSRVIHFTSEREFVQLLHEGYPVVVAFTIRGNYTKHLDKVLEEAAVEFYPNVKFMRVECPKYPGFCISRQR

Query:  KEYPFMEMFHSPQQVGIAHLILCLVLASNQGKIADPSVTKYSVKVLPVSF
        KEYPF+EMFHSP+Q            AS+QGKI+DP++TKYSVKVLP ++
Subjt:  KEYPFMEMFHSPQQVGIAHLILCLVLASNQGKIADPSVTKYSVKVLPVSF

A0A6J1K286 uncharacterized protein LOC111491762

9.0e-66

81.33

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Query:  MGDPTTLDRMLSHLRSACKYYTSYPKDLGPSRVIHFTSEREFVQLLHEGYPVVVAFTIRGNYTKHLDKVLEEAAVEFYPNVKFMRVECPKYPGFCISRQR
        MGDPT LDRML HLR+ CKYYT +PKDLGPSRVIHFTSEREFVQLLHEGYPVVVAFT+RGNYTKHLDKVLEEAAVEFYP VKFMRVECPKYPGFCISRQR
Subjt:  MGDPTTLDRMLSHLRSACKYYTSYPKDLGPSRVIHFTSEREFVQLLHEGYPVVVAFTIRGNYTKHLDKVLEEAAVEFYPNVKFMRVECPKYPGFCISRQR

Query:  KEYPFMEMFHSPQQVGIAHLILCLVLASNQGKIADPSVTKYSVKVLPVSF
        KEYPF+EMFHSPQQ            AS+QGKI+DP++TKYSVKVLP ++
Subjt:  KEYPFMEMFHSPQQVGIAHLILCLVLASNQGKIADPSVTKYSVKVLPVSF

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G57230.1 Thioredoxin superfamily protein

2.7e-62

70.67

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Query:  MGDPTTLDRMLSHLRSACKYYTSYPKDLGPSRVIHFTSEREFVQLLHEGYPVVVAFTIRGNYTKHLDKVLEEAAVEFYPNVKFMRVECPKYPGFCISRQR
        MGD T LDRML  LRS CKYY+ YPKDLGPSRV+HFTSEREFVQLLH+GYPVVVAFTIR NYT+HLD++LEEAA EFYPN+KFMRVECPKYPGFCI+RQ+
Subjt:  MGDPTTLDRMLSHLRSACKYYTSYPKDLGPSRVIHFTSEREFVQLLHEGYPVVVAFTIRGNYTKHLDKVLEEAAVEFYPNVKFMRVECPKYPGFCISRQR

Query:  KEYPFMEMFHSPQQVGIAHLILCLVLASNQGKIADPSVTKYSVKVLPVSF
         EYPF+E+FHSPQ  G            N+GK+ DP++T+YSVKV+P ++
Subjt:  KEYPFMEMFHSPQQVGIAHLILCLVLASNQGKIADPSVTKYSVKVLPVSF

Sequences

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CDS sequence

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ATGGGAGACCCAACAACTTTGGATAGAATGCTCAGTCATCTTCGTTCGGCATGCAAATATTATACTAGTTACCCAAAAGATCTTGGGCCTTCTAGGGTCATACATTTTAC
CTCTGAACGTGAGTTTGTTCAGCTCCTTCATGAAGGTTATCCAGTCGTCGTTGCTTTTACAATCAGAGGTAACTACACAAAGCATCTTGACAAAGTATTGGAGGAAGCTG
CGGTTGAGTTTTATCCAAATGTGAAATTTATGCGTGTTGAGTGCCCAAAGTATCCTGGTTTCTGCATTTCACGGCAGAGAAAGGAATATCCATTTATGGAGATGTTTCAT
AGTCCACAACAAGTAGGAATTGCCCATCTGATTTTGTGTTTGGTCTTGGCATCTAACCAGGGAAAGATTGCTGATCCTAGCGTTACGAAGTACTCGGTGAAGGTTCTACC
TGTAAGTTTTCAAGCTTTGTCAACCTCAATTCTACACAATATCTCCTCTTCCATCACATATTCAATTATGACCCCAGTGCCTACGGATTCAGAGAATTTTTCAAGCGTCA
TGGGATATATGGTCGTTGAATCAAAAGTAATAACATTTTATTATCTGCTATGTTTTTATAGTATTATGCAATCCGAAATCATGAACCAAACATCAGAGACTGCAGTTGGG
TCTTTGTAG

mRNA sequence

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Protein sequence

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MGDPTTLDRMLSHLRSACKYYTSYPKDLGPSRVIHFTSEREFVQLLHEGYPVVVAFTIRGNYTKHLDKVLEEAAVEFYPNVKFMRVECPKYPGFCISRQRKEYPFMEMFH
SPQQVGIAHLILCLVLASNQGKIADPSVTKYSVKVLPVSFQALSTSILHNISSSITYSIMTPVPTDSENFSSVMGYMVVESKVITFYYLLCFYSIMQSEIMNQTSETAVG
SL

Tan0007558 (gene) of Snake gourd v1 genome