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Tan0007602 (gene) of Snake gourd v1 genome

Gene IDTan0007602
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRetrotransposable element Tf2
Genome locationLG02:65304484..65307117
RNA-Seq ExpressionTan0007602
SyntenyTan0007602
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040832.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]1.9e-2538.65Show/hide
Query:  VEASFHYFSQTIHKNAFPLTMRFCLYFQTPWIFCWNFQINTYTYYKQIVKVLQIKWWDKYNFSHAGIKEVKQWFADNGYLQDLSKKKNAEFLSSKSKLLA
        V+ S+H F Q+I+ +    T RF LYFQ PWIFCWNFQ+ +   +K + K L+IKWW+K+N+SH  + ++K WF  N +LQD++++++  FL +K+ +++
Subjt:  VEASFHYFSQTIHKNAFPLTMRFCLYFQTPWIFCWNFQINTYTYYKQIVKVLQIKWWDKYNFSHAGIKEVKQWFADNGYLQDLSKKKNAEFLSSKSKLLA

Query:  ALAQTTTEADLQKFLNQVT--------SIASSSSPQNSEVEEDDEY------DINDPFLDSQP
         LA  +T+ +L   +N V          +   +SP +    +D +Y      DINDPFLD+QP
Subjt:  ALAQTTTEADLQKFLNQVT--------SIASSSSPQNSEVEEDDEY------DINDPFLDSQP

KAA0056777.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]7.4e-2539.16Show/hide
Query:  VEASFHYFSQTIHKNAFPLTMRFCLYFQTPWIFCWNFQINTYTYYKQIVKVLQIKWWDKYNFSHAGIKEVKQWFADNGYLQDLSKKKNAEFLSSKSKLLA
        V+ S+H F Q+I+ +    T RF LYFQ PWIFCWNFQ+     +K + K L+IKWW+K+N+SH  + ++K WF  N +LQD++++++  FL +K+ +++
Subjt:  VEASFHYFSQTIHKNAFPLTMRFCLYFQTPWIFCWNFQINTYTYYKQIVKVLQIKWWDKYNFSHAGIKEVKQWFADNGYLQDLSKKKNAEFLSSKSKLLA

Query:  ALAQTTTEADLQKFLNQVTSIASSSSPQNSEVEED--------------DEY---DINDPFLDSQP
         LA  +T+   Q+F + V ++  + S  N ++ ED              D Y   DINDPFLD+QP
Subjt:  ALAQTTTEADLQKFLNQVTSIASSSSPQNSEVEED--------------DEY---DINDPFLDSQP

KAA0063832.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]7.4e-2539.16Show/hide
Query:  VEASFHYFSQTIHKNAFPLTMRFCLYFQTPWIFCWNFQINTYTYYKQIVKVLQIKWWDKYNFSHAGIKEVKQWFADNGYLQDLSKKKNAEFLSSKSKLLA
        V+ S+H F Q+I+ +    T RF LYFQ PWIFCWNFQ+     +K + K L+IKWW+K+N+SH  + ++K WF  N +LQD++++++  FL +K+ +++
Subjt:  VEASFHYFSQTIHKNAFPLTMRFCLYFQTPWIFCWNFQINTYTYYKQIVKVLQIKWWDKYNFSHAGIKEVKQWFADNGYLQDLSKKKNAEFLSSKSKLLA

Query:  ALAQTTTEADLQKFLNQVTSIASSSSPQNSEVEED--------------DEY---DINDPFLDSQP
         LA  +T+   Q+F + V ++  + S  N ++ ED              D Y   DINDPFLD+QP
Subjt:  ALAQTTTEADLQKFLNQVTSIASSSSPQNSEVEED--------------DEY---DINDPFLDSQP

KAA0068172.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]7.4e-2539.16Show/hide
Query:  VEASFHYFSQTIHKNAFPLTMRFCLYFQTPWIFCWNFQINTYTYYKQIVKVLQIKWWDKYNFSHAGIKEVKQWFADNGYLQDLSKKKNAEFLSSKSKLLA
        V+ S+H F Q+I+ +    T RF LYFQ PWIFCWNFQ+     +K + K L+IKWW+K+N+SH  + ++K WF  N +LQD++++++  FL +K+ +++
Subjt:  VEASFHYFSQTIHKNAFPLTMRFCLYFQTPWIFCWNFQINTYTYYKQIVKVLQIKWWDKYNFSHAGIKEVKQWFADNGYLQDLSKKKNAEFLSSKSKLLA

Query:  ALAQTTTEADLQKFLNQVTSIASSSSPQNSEVEED--------------DEY---DINDPFLDSQP
         LA  +T+   Q+F + V ++  + S  N ++ ED              D Y   DINDPFLD+QP
Subjt:  ALAQTTTEADLQKFLNQVTSIASSSSPQNSEVEED--------------DEY---DINDPFLDSQP

TYK17808.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]1.9e-2538.65Show/hide
Query:  VEASFHYFSQTIHKNAFPLTMRFCLYFQTPWIFCWNFQINTYTYYKQIVKVLQIKWWDKYNFSHAGIKEVKQWFADNGYLQDLSKKKNAEFLSSKSKLLA
        V+ S+H F Q+I+ +    T RF LYFQ PWIFCWNFQ+ +   +K + K L+IKWW+K+N+SH  + ++K WF  N +LQD++++++  FL +K+ +++
Subjt:  VEASFHYFSQTIHKNAFPLTMRFCLYFQTPWIFCWNFQINTYTYYKQIVKVLQIKWWDKYNFSHAGIKEVKQWFADNGYLQDLSKKKNAEFLSSKSKLLA

Query:  ALAQTTTEADLQKFLNQVT--------SIASSSSPQNSEVEEDDEY------DINDPFLDSQP
         LA  +T+ +L   +N V          +   +SP +    +D +Y      DINDPFLD+QP
Subjt:  ALAQTTTEADLQKFLNQVT--------SIASSSSPQNSEVEEDDEY------DINDPFLDSQP

TrEMBL top hitse value%identityAlignment
A0A5A7TBK1 Retrotransposable element Tf29.4e-2638.65Show/hide
Query:  VEASFHYFSQTIHKNAFPLTMRFCLYFQTPWIFCWNFQINTYTYYKQIVKVLQIKWWDKYNFSHAGIKEVKQWFADNGYLQDLSKKKNAEFLSSKSKLLA
        V+ S+H F Q+I+ +    T RF LYFQ PWIFCWNFQ+ +   +K + K L+IKWW+K+N+SH  + ++K WF  N +LQD++++++  FL +K+ +++
Subjt:  VEASFHYFSQTIHKNAFPLTMRFCLYFQTPWIFCWNFQINTYTYYKQIVKVLQIKWWDKYNFSHAGIKEVKQWFADNGYLQDLSKKKNAEFLSSKSKLLA

Query:  ALAQTTTEADLQKFLNQVT--------SIASSSSPQNSEVEEDDEY------DINDPFLDSQP
         LA  +T+ +L   +N V          +   +SP +    +D +Y      DINDPFLD+QP
Subjt:  ALAQTTTEADLQKFLNQVT--------SIASSSSPQNSEVEEDDEY------DINDPFLDSQP

A0A5A7UVN1 Retrotransposable element Tf23.6e-2539.16Show/hide
Query:  VEASFHYFSQTIHKNAFPLTMRFCLYFQTPWIFCWNFQINTYTYYKQIVKVLQIKWWDKYNFSHAGIKEVKQWFADNGYLQDLSKKKNAEFLSSKSKLLA
        V+ S+H F Q+I+ +    T RF LYFQ PWIFCWNFQ+     +K + K L+IKWW+K+N+SH  + ++K WF  N +LQD++++++  FL +K+ +++
Subjt:  VEASFHYFSQTIHKNAFPLTMRFCLYFQTPWIFCWNFQINTYTYYKQIVKVLQIKWWDKYNFSHAGIKEVKQWFADNGYLQDLSKKKNAEFLSSKSKLLA

Query:  ALAQTTTEADLQKFLNQVTSIASSSSPQNSEVEED--------------DEY---DINDPFLDSQP
         LA  +T+   Q+F + V ++  + S  N ++ ED              D Y   DINDPFLD+QP
Subjt:  ALAQTTTEADLQKFLNQVTSIASSSSPQNSEVEED--------------DEY---DINDPFLDSQP

A0A5A7V6D1 Retrotransposable element Tf23.6e-2539.16Show/hide
Query:  VEASFHYFSQTIHKNAFPLTMRFCLYFQTPWIFCWNFQINTYTYYKQIVKVLQIKWWDKYNFSHAGIKEVKQWFADNGYLQDLSKKKNAEFLSSKSKLLA
        V+ S+H F Q+I+ +    T RF LYFQ PWIFCWNFQ+     +K + K L+IKWW+K+N+SH  + ++K WF  N +LQD++++++  FL +K+ +++
Subjt:  VEASFHYFSQTIHKNAFPLTMRFCLYFQTPWIFCWNFQINTYTYYKQIVKVLQIKWWDKYNFSHAGIKEVKQWFADNGYLQDLSKKKNAEFLSSKSKLLA

Query:  ALAQTTTEADLQKFLNQVTSIASSSSPQNSEVEED--------------DEY---DINDPFLDSQP
         LA  +T+   Q+F + V ++  + S  N ++ ED              D Y   DINDPFLD+QP
Subjt:  ALAQTTTEADLQKFLNQVTSIASSSSPQNSEVEED--------------DEY---DINDPFLDSQP

A0A5A7VIK9 Retrotransposable element Tf23.6e-2539.16Show/hide
Query:  VEASFHYFSQTIHKNAFPLTMRFCLYFQTPWIFCWNFQINTYTYYKQIVKVLQIKWWDKYNFSHAGIKEVKQWFADNGYLQDLSKKKNAEFLSSKSKLLA
        V+ S+H F Q+I+ +    T RF LYFQ PWIFCWNFQ+     +K + K L+IKWW+K+N+SH  + ++K WF  N +LQD++++++  FL +K+ +++
Subjt:  VEASFHYFSQTIHKNAFPLTMRFCLYFQTPWIFCWNFQINTYTYYKQIVKVLQIKWWDKYNFSHAGIKEVKQWFADNGYLQDLSKKKNAEFLSSKSKLLA

Query:  ALAQTTTEADLQKFLNQVTSIASSSSPQNSEVEED--------------DEY---DINDPFLDSQP
         LA  +T+   Q+F + V ++  + S  N ++ ED              D Y   DINDPFLD+QP
Subjt:  ALAQTTTEADLQKFLNQVTSIASSSSPQNSEVEED--------------DEY---DINDPFLDSQP

A0A5D3D2Q6 Retrotransposable element Tf29.4e-2638.65Show/hide
Query:  VEASFHYFSQTIHKNAFPLTMRFCLYFQTPWIFCWNFQINTYTYYKQIVKVLQIKWWDKYNFSHAGIKEVKQWFADNGYLQDLSKKKNAEFLSSKSKLLA
        V+ S+H F Q+I+ +    T RF LYFQ PWIFCWNFQ+ +   +K + K L+IKWW+K+N+SH  + ++K WF  N +LQD++++++  FL +K+ +++
Subjt:  VEASFHYFSQTIHKNAFPLTMRFCLYFQTPWIFCWNFQINTYTYYKQIVKVLQIKWWDKYNFSHAGIKEVKQWFADNGYLQDLSKKKNAEFLSSKSKLLA

Query:  ALAQTTTEADLQKFLNQVT--------SIASSSSPQNSEVEEDDEY------DINDPFLDSQP
         LA  +T+ +L   +N V          +   +SP +    +D +Y      DINDPFLD+QP
Subjt:  ALAQTTTEADLQKFLNQVT--------SIASSSSPQNSEVEEDDEY------DINDPFLDSQP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G29450.1 General transcription factor 2-related zinc finger protein3.1e-0548.33Show/hide
Query:  LTNIHLYP-----TGLTPSGVRTTGPKTSRFESEFNSAWIASFHFSQSFLRLHSSIDFGS
        +TN+H Y      T L         P TS F  +FNSA +ASFHF QS L +HSSID GS
Subjt:  LTNIHLYP-----TGLTPSGVRTTGPKTSRFESEFNSAWIASFHFSQSFLRLHSSIDFGS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCGCCGATCAATACGCAATGGATCTGGGTTTCACTCAGGTGAATCGCCCAAGAACCAGAAGCGCATCGATTCAAATAAGAGATTCAATGGAGTCATTAACTCCACC
ACCGAGGCCATCAGCCTCCCTCATGCGGCCTACTACCGTTACACCAATGAGACCTTCTGTCTCACCTACTACTCCATCTTCGTCTCAACAGGGATCTTCAATCCCTACAA
CCTTTGTTGAAGCCTCATTCCATTATTTTTCACAAACAATACACAAAAATGCATTCCCACTCACAATGCGTTTTTGTTTATACTTTCAAACCCCTTGGATATTCTGTTGG
AATTTCCAAATCAATACTTACACCTATTACAAACAAATCGTAAAAGTTTTACAAATCAAATGGTGGGACAAGTACAACTTTTCTCACGCAGGAATCAAAGAAGTGAAGCA
ATGGTTTGCCGATAATGGCTACCTCCAAGACCTGTCAAAGAAGAAAAATGCAGAGTTCCTCAGTTCCAAATCAAAGCTGCTAGCTGCCTTAGCACAAACAACAACAGAGG
CAGATTTACAAAAATTTTTGAATCAAGTTACTTCAATAGCATCTTCGTCTTCTCCACAAAACTCTGAAGTGGAAGAAGATGATGAATATGATATCAATGATCCATTTTTA
GATTCCCAACCAATTCTCGCTTTATATCTTGTGACTTCATTCTTTTCATTTCTTTTCCTTACAAATATCCATTTGTATCCCACAGGTTTGACACCTTCTGGTGTTAGGAC
TACTGGTCCAAAAACCTCACGTTTTGAAAGTGAGTTCAACTCTGCTTGGATTGCTTCTTTCCACTTCAGCCAATCCTTTCTACGTTTACATTCTTCGATAGATTTTGGAT
CAAAATCGTCACTTTCATGA
mRNA sequenceShow/hide mRNA sequence
ATGAGCGCCGATCAATACGCAATGGATCTGGGTTTCACTCAGGTGAATCGCCCAAGAACCAGAAGCGCATCGATTCAAATAAGAGATTCAATGGAGTCATTAACTCCACC
ACCGAGGCCATCAGCCTCCCTCATGCGGCCTACTACCGTTACACCAATGAGACCTTCTGTCTCACCTACTACTCCATCTTCGTCTCAACAGGGATCTTCAATCCCTACAA
CCTTTGTTGAAGCCTCATTCCATTATTTTTCACAAACAATACACAAAAATGCATTCCCACTCACAATGCGTTTTTGTTTATACTTTCAAACCCCTTGGATATTCTGTTGG
AATTTCCAAATCAATACTTACACCTATTACAAACAAATCGTAAAAGTTTTACAAATCAAATGGTGGGACAAGTACAACTTTTCTCACGCAGGAATCAAAGAAGTGAAGCA
ATGGTTTGCCGATAATGGCTACCTCCAAGACCTGTCAAAGAAGAAAAATGCAGAGTTCCTCAGTTCCAAATCAAAGCTGCTAGCTGCCTTAGCACAAACAACAACAGAGG
CAGATTTACAAAAATTTTTGAATCAAGTTACTTCAATAGCATCTTCGTCTTCTCCACAAAACTCTGAAGTGGAAGAAGATGATGAATATGATATCAATGATCCATTTTTA
GATTCCCAACCAATTCTCGCTTTATATCTTGTGACTTCATTCTTTTCATTTCTTTTCCTTACAAATATCCATTTGTATCCCACAGGTTTGACACCTTCTGGTGTTAGGAC
TACTGGTCCAAAAACCTCACGTTTTGAAAGTGAGTTCAACTCTGCTTGGATTGCTTCTTTCCACTTCAGCCAATCCTTTCTACGTTTACATTCTTCGATAGATTTTGGAT
CAAAATCGTCACTTTCATGA
Protein sequenceShow/hide protein sequence
MSADQYAMDLGFTQVNRPRTRSASIQIRDSMESLTPPPRPSASLMRPTTVTPMRPSVSPTTPSSSQQGSSIPTTFVEASFHYFSQTIHKNAFPLTMRFCLYFQTPWIFCW
NFQINTYTYYKQIVKVLQIKWWDKYNFSHAGIKEVKQWFADNGYLQDLSKKKNAEFLSSKSKLLAALAQTTTEADLQKFLNQVTSIASSSSPQNSEVEEDDEYDINDPFL
DSQPILALYLVTSFFSFLFLTNIHLYPTGLTPSGVRTTGPKTSRFESEFNSAWIASFHFSQSFLRLHSSIDFGSKSSLS