| GenBank top hits | e value | %identity | Alignment |
|---|
| KAA0033228.1 gag/pol protein [Cucumis melo var. makuwa] | 2.7e-131 | 57.14 | Show/hide |
Query: AKEIMESLREIHDDPLPSGRDERASIDELSQNFQSLHRVKESEANVAYRSYHRGSTSGTKRVAPSRLKGKKRMKRGKTDRVAAHNGKKVKEIAEKGNCFH
A++IM+SLR++ P SI ++K+ +ANVAY S+SG++++ K++ +GK +AA NGK ++A KG CFH
Subjt: AKEIMESLREIHDDPLPSGRDERASIDELSQNFQSLHRVKESEANVAYRSYHRGSTSGTKRVAPSRLKGKKRMKRGKTDRVAAHNGKKVKEIAEKGNCFH
Query: CNGGGHWKRNCPKFLAERKNQG------------------------------------HINLNRIEKLVKSGLLNEFEENSLPVCESCLEGKMTKRPFSG
CN HWK NCPK+L ++K +G HINL+RIE+LVK+GLLNE E++SLP CESCLEGKMTKRPF+
Subjt: CNGGGHWKRNCPKFLAERKNQG------------------------------------HINLNRIEKLVKSGLLNEFEENSLPVCESCLEGKMTKRPFSG
Query: KGYRAKEPLELVHSDLYGPMNAKARGGYEYFVSFIDDYSRYGYIYLMHKKFETLEKFKEYKTEVENLLGKSLKTLRSDR---------------------
KGYRAKEPLEL+H DL GPMN KARGG+EYF+SFIDDYS YGY+YLM K E LEKFKEYK EVENLL K +K LRSDR
Subjt: KGYRAKEPLELVHSDLYGPMNAKARGGYEYFVSFIDDYSRYGYIYLMHKKFETLEKFKEYKTEVENLLGKSLKTLRSDR---------------------
Query: --APGMPQQNGVSGRRNRTLLDMVRSMMSYARLPDSFWGYAVETAVYILNNVPSKSVCETPFELWSGRKGSLHHFRIWGCPTHVLVSNPKKLEPRLKLCL
APG PQQN VS RRNRTLLDMV SMMSYA+LP SFWGYAVET V+ILNNVPSKSV ETPFELW GRK SL HF+IWGC HVLV+NPKKLEPR LC
Subjt: --APGMPQQNGVSGRRNRTLLDMVRSMMSYARLPDSFWGYAVETAVYILNNVPSKSVCETPFELWSGRKGSLHHFRIWGCPTHVLVSNPKKLEPRLKLCL
Query: FVGYPKETRGGLFYDPRENRVLVSTNAIFIEEDHVRDHLPRSKIVLNE
FVGYPKETRGGLF+DP+EN+V VS NA F+EEDH+RDH PRSK+VLNE
Subjt: FVGYPKETRGGLFYDPRENRVLVSTNAIFIEEDHVRDHLPRSKIVLNE
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| KAA0060254.1 gag/pol protein [Cucumis melo var. makuwa] | 9.3e-140 | 66.08 | Show/hide |
Query: ASIDELSQNFQSLHRVKESEANVA--YRSYHRGSTSGTKRVAPSRLKGKKRMKRG----KTDRVAAHNGKKVKEIAEKGNCFHCNGGGHWKRNCPKFLAE
A IDE SQ ++ EANVA R +HRGSTSGTK + S K + K+G K + AA KK K A KG CFH N GHWKRNCPK+LAE
Subjt: ASIDELSQNFQSLHRVKESEANVA--YRSYHRGSTSGTKRVAPSRLKGKKRMKRG----KTDRVAAHNGKKVKEIAEKGNCFHCNGGGHWKRNCPKFLAE
Query: RK--NQGHINLNRIEKLVKSGLLNEFEENSLPVCESCLEGKMTKRPFSGKGYRAKEPLELVHSDLYGPMNAKARGGYEYFVSFIDDYSRYGYIYLMHKKF
+K QGHINLNRIE+LVK+G+L+E EENSLP+CESCLEGKMTKRPF+GKG+RAKEPLELVHSDL GPMN KARG +EYF++F DDYSRYGY+YLM K
Subjt: RK--NQGHINLNRIEKLVKSGLLNEFEENSLPVCESCLEGKMTKRPFSGKGYRAKEPLELVHSDLYGPMNAKARGGYEYFVSFIDDYSRYGYIYLMHKKF
Query: ETLEKFKEYKTEVENLLGKSLKTLRSDR-----------------------APGMPQQNGVSGRRNRTLLDMVRSMMSYARLPDSFWGYAVETAVYILNN
E LEKFKEYK EVEN L K++KT RSDR APG PQQNGVS RRNRTLLDMVRSM+SYA LP+SFWGYAV+TAVYILN
Subjt: ETLEKFKEYKTEVENLLGKSLKTLRSDR-----------------------APGMPQQNGVSGRRNRTLLDMVRSMMSYARLPDSFWGYAVETAVYILNN
Query: VPSKSVCETPFELWSGRKGSLHHFRIWGCPTHVLVSNPKKLEPRLKLCLFVGYPKETRGGLFYDPRENRVLVSTNAIFIEEDHVRDHLPRSKIVLNEM
VPSKSV ETP +LW+GRKGSL HFRIWGCP HVL +NPKKLEPR KLCLFVGYPK TRGG FYD ++N+V V TNA F+E+DH+R+H PRSKIVLN++
Subjt: VPSKSVCETPFELWSGRKGSLHHFRIWGCPTHVLVSNPKKLEPRLKLCLFVGYPKETRGGLFYDPRENRVLVSTNAIFIEEDHVRDHLPRSKIVLNEM
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| TYJ96910.1 gag/pol protein [Cucumis melo var. makuwa] | 3.1e-135 | 62.89 | Show/hide |
Query: QNFQSLHRVK--ESEANVA--YRSYHRGSTSGTKRVAPS----RLKGKKRMKRGKTDRVAAHNGKKVKEIAEKGNCFHCNGGGHWKRNCPKFLAERKNQG
Q F+SL ++K + EANVA R +HRGSTSGTK + S + K K ++ K + AA KK K A KG FHCN GHWKRNCPK+LAE+K
Subjt: QNFQSLHRVK--ESEANVA--YRSYHRGSTSGTKRVAPS----RLKGKKRMKRGKTDRVAAHNGKKVKEIAEKGNCFHCNGGGHWKRNCPKFLAERKNQG
Query: ------------------------HINLNRIEKLVKSGLLNEFEENSLPVCESCLEGKMTKRPFSGKGYRAKEPLELVHSDLYGPMNAKARGGYEYFVSF
HINLNRIE+LV++GLL+E EEN LPVCESCLEGKMTKRPF+GKG+RAKEPLELVHSDL GPMN KARGG+EYF++F
Subjt: ------------------------HINLNRIEKLVKSGLLNEFEENSLPVCESCLEGKMTKRPFSGKGYRAKEPLELVHSDLYGPMNAKARGGYEYFVSF
Query: IDDYSRYGYIYLMHKKFETLEKFKEYKTEVENLLGKSLKTLRSDR-----------------------APGMPQQNGVSGRRNRTLLDMVRSMMSYARLP
DDYSRYGY+YLM K E LEKFKEYK EVEN L K++KT RSDR APG PQQNGVS RRN+TLLDMV SMMSYA LP
Subjt: IDDYSRYGYIYLMHKKFETLEKFKEYKTEVENLLGKSLKTLRSDR-----------------------APGMPQQNGVSGRRNRTLLDMVRSMMSYARLP
Query: DSFWGYAVETAVYILNNVPSKSVCETPFELWSGRKGSLHHFRIWGCPTHVLVSNPKKLEPRLKLCLFVGYPKETRGGLFYDPRENRVLVSTNAIFIEEDH
+SFWGYAV+TAVYILN VPSKSV ETP +LW+GRKGSLHHFRI GCP HVL N KKLEPR KLCLFVGY K +RGG FYDP++N+VLVSTNA F+EEDH
Subjt: DSFWGYAVETAVYILNNVPSKSVCETPFELWSGRKGSLHHFRIWGCPTHVLVSNPKKLEPRLKLCLFVGYPKETRGGLFYDPRENRVLVSTNAIFIEEDH
Query: VRDHLPRSKIVLNEM
+R+H PRSKIVLNE+
Subjt: VRDHLPRSKIVLNEM
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| TYJ97618.1 gag/pol protein [Cucumis melo var. makuwa] | 1.5e-142 | 67.09 | Show/hide |
Query: ASIDELSQNFQSLHRVKESEANVA--YRSYHRGSTSGTKRVAPSRLKGKKRMKRG----KTDRVAAHNGKKVKEIAEKGNCFHCNGGGHWKRNCPKFLAE
A IDE SQ ++ EANVA R +HRGSTSGTK + S K + K+G K + AA KK K A KG CFH N GHWKRNCPK+LAE
Subjt: ASIDELSQNFQSLHRVKESEANVA--YRSYHRGSTSGTKRVAPSRLKGKKRMKRG----KTDRVAAHNGKKVKEIAEKGNCFHCNGGGHWKRNCPKFLAE
Query: RK--NQGHINLNRIEKLVKSGLLNEFEENSLPVCESCLEGKMTKRPFSGKGYRAKEPLELVHSDLYGPMNAKARGGYEYFVSFIDDYSRYGYIYLMHKKF
+K QGHINLNRIE+LVK+G+L+E EENSLP+CESCLEGKMTKRPF+GKG+RAKEPLELVHSDL GPMN KARG +EYF++F DDYSRYGY+YLM K
Subjt: RK--NQGHINLNRIEKLVKSGLLNEFEENSLPVCESCLEGKMTKRPFSGKGYRAKEPLELVHSDLYGPMNAKARGGYEYFVSFIDDYSRYGYIYLMHKKF
Query: ETLEKFKEYKTEVENLLGKSLKTLRSDR-----------------------APGMPQQNGVSGRRNRTLLDMVRSMMSYARLPDSFWGYAVETAVYILNN
E LEKFKEYK EVEN L K++KT RSDR APG PQQNGVS RRNRTLLDMVRSM+SYA LP+SFWGYAV+TAVYILN
Subjt: ETLEKFKEYKTEVENLLGKSLKTLRSDR-----------------------APGMPQQNGVSGRRNRTLLDMVRSMMSYARLPDSFWGYAVETAVYILNN
Query: VPSKSVCETPFELWSGRKGSLHHFRIWGCPTHVLVSNPKKLEPRLKLCLFVGYPKETRGGLFYDPRENRVLVSTNAIFIEEDHVRDHLPRSKIVLNEM
VPSKSV ETP +LW+GRKGSL HFRIWGCP HVL +NPKKLEPR KLCLFVGYPK TRGG FYDP++N+V VSTNA F+EEDH+R+H PRSKIVLNE+
Subjt: VPSKSVCETPFELWSGRKGSLHHFRIWGCPTHVLVSNPKKLEPRLKLCLFVGYPKETRGGLFYDPRENRVLVSTNAIFIEEDHVRDHLPRSKIVLNEM
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| TYJ98809.1 gag/pol protein [Cucumis melo var. makuwa] | 2.7e-131 | 57.14 | Show/hide |
Query: AKEIMESLREIHDDPLPSGRDERASIDELSQNFQSLHRVKESEANVAYRSYHRGSTSGTKRVAPSRLKGKKRMKRGKTDRVAAHNGKKVKEIAEKGNCFH
A++IM+SLR++ P SI ++K+ +ANVAY S+SG++++ K++ +GK +AA NGK ++A KG CFH
Subjt: AKEIMESLREIHDDPLPSGRDERASIDELSQNFQSLHRVKESEANVAYRSYHRGSTSGTKRVAPSRLKGKKRMKRGKTDRVAAHNGKKVKEIAEKGNCFH
Query: CNGGGHWKRNCPKFLAERKNQG------------------------------------HINLNRIEKLVKSGLLNEFEENSLPVCESCLEGKMTKRPFSG
CN HWK NCPK+L ++K +G HINL+RIE+LVK+GLLNE E++SLP CESCLEGKMTKRPF+
Subjt: CNGGGHWKRNCPKFLAERKNQG------------------------------------HINLNRIEKLVKSGLLNEFEENSLPVCESCLEGKMTKRPFSG
Query: KGYRAKEPLELVHSDLYGPMNAKARGGYEYFVSFIDDYSRYGYIYLMHKKFETLEKFKEYKTEVENLLGKSLKTLRSDR---------------------
KGYRAKEPLEL+H DL GPMN KARGG+EYF+SFIDDYS YGY+YLM K E LEKFKEYK EVENLL K +K LRSDR
Subjt: KGYRAKEPLELVHSDLYGPMNAKARGGYEYFVSFIDDYSRYGYIYLMHKKFETLEKFKEYKTEVENLLGKSLKTLRSDR---------------------
Query: --APGMPQQNGVSGRRNRTLLDMVRSMMSYARLPDSFWGYAVETAVYILNNVPSKSVCETPFELWSGRKGSLHHFRIWGCPTHVLVSNPKKLEPRLKLCL
APG PQQN VS RRNRTLLDMV SMMSYA+LP SFWGYAVET V+ILNNVPSKSV ETPFELW GRK SL HF+IWGC HVLV+NPKKLEPR LC
Subjt: --APGMPQQNGVSGRRNRTLLDMVRSMMSYARLPDSFWGYAVETAVYILNNVPSKSVCETPFELWSGRKGSLHHFRIWGCPTHVLVSNPKKLEPRLKLCL
Query: FVGYPKETRGGLFYDPRENRVLVSTNAIFIEEDHVRDHLPRSKIVLNE
FVGYPKETRGGLF+DP+EN+V VS NA F+EEDH+RDH PRSK+VLNE
Subjt: FVGYPKETRGGLFYDPRENRVLVSTNAIFIEEDHVRDHLPRSKIVLNE
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A5A7SRR6 Gag/pol protein | 1.3e-131 | 57.14 | Show/hide |
Query: AKEIMESLREIHDDPLPSGRDERASIDELSQNFQSLHRVKESEANVAYRSYHRGSTSGTKRVAPSRLKGKKRMKRGKTDRVAAHNGKKVKEIAEKGNCFH
A++IM+SLR++ P SI ++K+ +ANVAY S+SG++++ K++ +GK +AA NGK ++A KG CFH
Subjt: AKEIMESLREIHDDPLPSGRDERASIDELSQNFQSLHRVKESEANVAYRSYHRGSTSGTKRVAPSRLKGKKRMKRGKTDRVAAHNGKKVKEIAEKGNCFH
Query: CNGGGHWKRNCPKFLAERKNQG------------------------------------HINLNRIEKLVKSGLLNEFEENSLPVCESCLEGKMTKRPFSG
CN HWK NCPK+L ++K +G HINL+RIE+LVK+GLLNE E++SLP CESCLEGKMTKRPF+
Subjt: CNGGGHWKRNCPKFLAERKNQG------------------------------------HINLNRIEKLVKSGLLNEFEENSLPVCESCLEGKMTKRPFSG
Query: KGYRAKEPLELVHSDLYGPMNAKARGGYEYFVSFIDDYSRYGYIYLMHKKFETLEKFKEYKTEVENLLGKSLKTLRSDR---------------------
KGYRAKEPLEL+H DL GPMN KARGG+EYF+SFIDDYS YGY+YLM K E LEKFKEYK EVENLL K +K LRSDR
Subjt: KGYRAKEPLELVHSDLYGPMNAKARGGYEYFVSFIDDYSRYGYIYLMHKKFETLEKFKEYKTEVENLLGKSLKTLRSDR---------------------
Query: --APGMPQQNGVSGRRNRTLLDMVRSMMSYARLPDSFWGYAVETAVYILNNVPSKSVCETPFELWSGRKGSLHHFRIWGCPTHVLVSNPKKLEPRLKLCL
APG PQQN VS RRNRTLLDMV SMMSYA+LP SFWGYAVET V+ILNNVPSKSV ETPFELW GRK SL HF+IWGC HVLV+NPKKLEPR LC
Subjt: --APGMPQQNGVSGRRNRTLLDMVRSMMSYARLPDSFWGYAVETAVYILNNVPSKSVCETPFELWSGRKGSLHHFRIWGCPTHVLVSNPKKLEPRLKLCL
Query: FVGYPKETRGGLFYDPRENRVLVSTNAIFIEEDHVRDHLPRSKIVLNE
FVGYPKETRGGLF+DP+EN+V VS NA F+EEDH+RDH PRSK+VLNE
Subjt: FVGYPKETRGGLFYDPRENRVLVSTNAIFIEEDHVRDHLPRSKIVLNE
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| A0A5A7UYX7 Gag/pol protein | 4.5e-140 | 66.08 | Show/hide |
Query: ASIDELSQNFQSLHRVKESEANVA--YRSYHRGSTSGTKRVAPSRLKGKKRMKRG----KTDRVAAHNGKKVKEIAEKGNCFHCNGGGHWKRNCPKFLAE
A IDE SQ ++ EANVA R +HRGSTSGTK + S K + K+G K + AA KK K A KG CFH N GHWKRNCPK+LAE
Subjt: ASIDELSQNFQSLHRVKESEANVA--YRSYHRGSTSGTKRVAPSRLKGKKRMKRG----KTDRVAAHNGKKVKEIAEKGNCFHCNGGGHWKRNCPKFLAE
Query: RK--NQGHINLNRIEKLVKSGLLNEFEENSLPVCESCLEGKMTKRPFSGKGYRAKEPLELVHSDLYGPMNAKARGGYEYFVSFIDDYSRYGYIYLMHKKF
+K QGHINLNRIE+LVK+G+L+E EENSLP+CESCLEGKMTKRPF+GKG+RAKEPLELVHSDL GPMN KARG +EYF++F DDYSRYGY+YLM K
Subjt: RK--NQGHINLNRIEKLVKSGLLNEFEENSLPVCESCLEGKMTKRPFSGKGYRAKEPLELVHSDLYGPMNAKARGGYEYFVSFIDDYSRYGYIYLMHKKF
Query: ETLEKFKEYKTEVENLLGKSLKTLRSDR-----------------------APGMPQQNGVSGRRNRTLLDMVRSMMSYARLPDSFWGYAVETAVYILNN
E LEKFKEYK EVEN L K++KT RSDR APG PQQNGVS RRNRTLLDMVRSM+SYA LP+SFWGYAV+TAVYILN
Subjt: ETLEKFKEYKTEVENLLGKSLKTLRSDR-----------------------APGMPQQNGVSGRRNRTLLDMVRSMMSYARLPDSFWGYAVETAVYILNN
Query: VPSKSVCETPFELWSGRKGSLHHFRIWGCPTHVLVSNPKKLEPRLKLCLFVGYPKETRGGLFYDPRENRVLVSTNAIFIEEDHVRDHLPRSKIVLNEM
VPSKSV ETP +LW+GRKGSL HFRIWGCP HVL +NPKKLEPR KLCLFVGYPK TRGG FYD ++N+V V TNA F+E+DH+R+H PRSKIVLN++
Subjt: VPSKSVCETPFELWSGRKGSLHHFRIWGCPTHVLVSNPKKLEPRLKLCLFVGYPKETRGGLFYDPRENRVLVSTNAIFIEEDHVRDHLPRSKIVLNEM
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| A0A5D3BAN6 Gag/pol protein | 1.5e-135 | 62.89 | Show/hide |
Query: QNFQSLHRVK--ESEANVA--YRSYHRGSTSGTKRVAPS----RLKGKKRMKRGKTDRVAAHNGKKVKEIAEKGNCFHCNGGGHWKRNCPKFLAERKNQG
Q F+SL ++K + EANVA R +HRGSTSGTK + S + K K ++ K + AA KK K A KG FHCN GHWKRNCPK+LAE+K
Subjt: QNFQSLHRVK--ESEANVA--YRSYHRGSTSGTKRVAPS----RLKGKKRMKRGKTDRVAAHNGKKVKEIAEKGNCFHCNGGGHWKRNCPKFLAERKNQG
Query: ------------------------HINLNRIEKLVKSGLLNEFEENSLPVCESCLEGKMTKRPFSGKGYRAKEPLELVHSDLYGPMNAKARGGYEYFVSF
HINLNRIE+LV++GLL+E EEN LPVCESCLEGKMTKRPF+GKG+RAKEPLELVHSDL GPMN KARGG+EYF++F
Subjt: ------------------------HINLNRIEKLVKSGLLNEFEENSLPVCESCLEGKMTKRPFSGKGYRAKEPLELVHSDLYGPMNAKARGGYEYFVSF
Query: IDDYSRYGYIYLMHKKFETLEKFKEYKTEVENLLGKSLKTLRSDR-----------------------APGMPQQNGVSGRRNRTLLDMVRSMMSYARLP
DDYSRYGY+YLM K E LEKFKEYK EVEN L K++KT RSDR APG PQQNGVS RRN+TLLDMV SMMSYA LP
Subjt: IDDYSRYGYIYLMHKKFETLEKFKEYKTEVENLLGKSLKTLRSDR-----------------------APGMPQQNGVSGRRNRTLLDMVRSMMSYARLP
Query: DSFWGYAVETAVYILNNVPSKSVCETPFELWSGRKGSLHHFRIWGCPTHVLVSNPKKLEPRLKLCLFVGYPKETRGGLFYDPRENRVLVSTNAIFIEEDH
+SFWGYAV+TAVYILN VPSKSV ETP +LW+GRKGSLHHFRI GCP HVL N KKLEPR KLCLFVGY K +RGG FYDP++N+VLVSTNA F+EEDH
Subjt: DSFWGYAVETAVYILNNVPSKSVCETPFELWSGRKGSLHHFRIWGCPTHVLVSNPKKLEPRLKLCLFVGYPKETRGGLFYDPRENRVLVSTNAIFIEEDH
Query: VRDHLPRSKIVLNEM
+R+H PRSKIVLNE+
Subjt: VRDHLPRSKIVLNEM
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| A0A5D3BHG7 Gag/pol protein | 7.5e-143 | 67.09 | Show/hide |
Query: ASIDELSQNFQSLHRVKESEANVA--YRSYHRGSTSGTKRVAPSRLKGKKRMKRG----KTDRVAAHNGKKVKEIAEKGNCFHCNGGGHWKRNCPKFLAE
A IDE SQ ++ EANVA R +HRGSTSGTK + S K + K+G K + AA KK K A KG CFH N GHWKRNCPK+LAE
Subjt: ASIDELSQNFQSLHRVKESEANVA--YRSYHRGSTSGTKRVAPSRLKGKKRMKRG----KTDRVAAHNGKKVKEIAEKGNCFHCNGGGHWKRNCPKFLAE
Query: RK--NQGHINLNRIEKLVKSGLLNEFEENSLPVCESCLEGKMTKRPFSGKGYRAKEPLELVHSDLYGPMNAKARGGYEYFVSFIDDYSRYGYIYLMHKKF
+K QGHINLNRIE+LVK+G+L+E EENSLP+CESCLEGKMTKRPF+GKG+RAKEPLELVHSDL GPMN KARG +EYF++F DDYSRYGY+YLM K
Subjt: RK--NQGHINLNRIEKLVKSGLLNEFEENSLPVCESCLEGKMTKRPFSGKGYRAKEPLELVHSDLYGPMNAKARGGYEYFVSFIDDYSRYGYIYLMHKKF
Query: ETLEKFKEYKTEVENLLGKSLKTLRSDR-----------------------APGMPQQNGVSGRRNRTLLDMVRSMMSYARLPDSFWGYAVETAVYILNN
E LEKFKEYK EVEN L K++KT RSDR APG PQQNGVS RRNRTLLDMVRSM+SYA LP+SFWGYAV+TAVYILN
Subjt: ETLEKFKEYKTEVENLLGKSLKTLRSDR-----------------------APGMPQQNGVSGRRNRTLLDMVRSMMSYARLPDSFWGYAVETAVYILNN
Query: VPSKSVCETPFELWSGRKGSLHHFRIWGCPTHVLVSNPKKLEPRLKLCLFVGYPKETRGGLFYDPRENRVLVSTNAIFIEEDHVRDHLPRSKIVLNEM
VPSKSV ETP +LW+GRKGSL HFRIWGCP HVL +NPKKLEPR KLCLFVGYPK TRGG FYDP++N+V VSTNA F+EEDH+R+H PRSKIVLNE+
Subjt: VPSKSVCETPFELWSGRKGSLHHFRIWGCPTHVLVSNPKKLEPRLKLCLFVGYPKETRGGLFYDPRENRVLVSTNAIFIEEDHVRDHLPRSKIVLNEM
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| A0A5D3BIJ7 Gag/pol protein | 1.3e-131 | 57.14 | Show/hide |
Query: AKEIMESLREIHDDPLPSGRDERASIDELSQNFQSLHRVKESEANVAYRSYHRGSTSGTKRVAPSRLKGKKRMKRGKTDRVAAHNGKKVKEIAEKGNCFH
A++IM+SLR++ P SI ++K+ +ANVAY S+SG++++ K++ +GK +AA NGK ++A KG CFH
Subjt: AKEIMESLREIHDDPLPSGRDERASIDELSQNFQSLHRVKESEANVAYRSYHRGSTSGTKRVAPSRLKGKKRMKRGKTDRVAAHNGKKVKEIAEKGNCFH
Query: CNGGGHWKRNCPKFLAERKNQG------------------------------------HINLNRIEKLVKSGLLNEFEENSLPVCESCLEGKMTKRPFSG
CN HWK NCPK+L ++K +G HINL+RIE+LVK+GLLNE E++SLP CESCLEGKMTKRPF+
Subjt: CNGGGHWKRNCPKFLAERKNQG------------------------------------HINLNRIEKLVKSGLLNEFEENSLPVCESCLEGKMTKRPFSG
Query: KGYRAKEPLELVHSDLYGPMNAKARGGYEYFVSFIDDYSRYGYIYLMHKKFETLEKFKEYKTEVENLLGKSLKTLRSDR---------------------
KGYRAKEPLEL+H DL GPMN KARGG+EYF+SFIDDYS YGY+YLM K E LEKFKEYK EVENLL K +K LRSDR
Subjt: KGYRAKEPLELVHSDLYGPMNAKARGGYEYFVSFIDDYSRYGYIYLMHKKFETLEKFKEYKTEVENLLGKSLKTLRSDR---------------------
Query: --APGMPQQNGVSGRRNRTLLDMVRSMMSYARLPDSFWGYAVETAVYILNNVPSKSVCETPFELWSGRKGSLHHFRIWGCPTHVLVSNPKKLEPRLKLCL
APG PQQN VS RRNRTLLDMV SMMSYA+LP SFWGYAVET V+ILNNVPSKSV ETPFELW GRK SL HF+IWGC HVLV+NPKKLEPR LC
Subjt: --APGMPQQNGVSGRRNRTLLDMVRSMMSYARLPDSFWGYAVETAVYILNNVPSKSVCETPFELWSGRKGSLHHFRIWGCPTHVLVSNPKKLEPRLKLCL
Query: FVGYPKETRGGLFYDPRENRVLVSTNAIFIEEDHVRDHLPRSKIVLNE
FVGYPKETRGGLF+DP+EN+V VS NA F+EEDH+RDH PRSK+VLNE
Subjt: FVGYPKETRGGLFYDPRENRVLVSTNAIFIEEDHVRDHLPRSKIVLNE
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| SwissProt top hits | e value | %identity | Alignment |
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| P04146 Copia protein | 5.7e-31 | 28.43 | Show/hide |
Query: GHINLNRIEKLVKSGLLNEFE-----ENSLPVCESCLEGKMTKRPFSGKGYRA--KEPLELVHSDLYGPMNAKARGGYEYFVSFIDDYSRYGYIYLMHKK
GHI+ ++ ++ + + ++ E S +CE CL GK + PF + K PL +VHSD+ GP+ YFV F+D ++ Y YL+ K
Subjt: GHINLNRIEKLVKSGLLNEFE-----ENSLPVCESCLEGKMTKRPFSGKGYRA--KEPLELVHSDLYGPMNAKARGGYEYFVSFIDDYSRYGYIYLMHKK
Query: FETLEKFKEYKTEVENLLGKSLKTLRSDR-----------------------APGMPQQNGVSGRRNRTLLDMVRSMMSYARLPDSFWGYAVETAVYILN
+ F+++ + E + L D P PQ NGVS R RT+ + R+M+S A+L SFWG AV TA Y++N
Subjt: FETLEKFKEYKTEVENLLGKSLKTLRSDR-----------------------APGMPQQNGVSGRRNRTLLDMVRSMMSYARLPDSFWGYAVETAVYILN
Query: NVPSKSVCE---TPFELWSGRKGSLHHFRIWGCPTHVLVSNPK-KLEPRLKLCLFVGYPKETRGGLFYDPRENRVLVSTNAIFIEEDHVRDHLPRSKIV
+PS+++ + TP+E+W +K L H R++G +V + N + K + + +FVGY E G +D + +V+ + + E + V + + V
Subjt: NVPSKSVCE---TPFELWSGRKGSLHHFRIWGCPTHVLVSNPK-KLEPRLKLCLFVGYPKETRGGLFYDPRENRVLVSTNAIFIEEDHVRDHLPRSKIV
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| P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 2.0e-44 | 34.46 | Show/hide |
Query: KNQGHINLNRIEKLVKSGLLNEFEENSLPVCESCLEGKMTKRPFSGKGYRAKEPLELVHSDLYGPMNAKARGGYEYFVSFIDDYSRYGYIYLMHKKFETL
K GH++ ++ L K L++ + ++ C+ CL GK + F R L+LV+SD+ GPM ++ GG +YFV+FIDD SR ++Y++ K +
Subjt: KNQGHINLNRIEKLVKSGLLNEFEENSLPVCESCLEGKMTKRPFSGKGYRAKEPLELVHSDLYGPMNAKARGGYEYFVSFIDDYSRYGYIYLMHKKFETL
Query: EKFKEYKTEVENLLGKSLKTLRSDR-----------------------APGMPQQNGVSGRRNRTLLDMVRSMMSYARLPDSFWGYAVETAVYILNNVPS
+ F+++ VE G+ LK LRSD PG PQ NGV+ R NRT+++ VRSM+ A+LP SFWG AV+TA Y++N PS
Subjt: EKFKEYKTEVENLLGKSLKTLRSDR-----------------------APGMPQQNGVSGRRNRTLLDMVRSMMSYARLPDSFWGYAVETAVYILNNVPS
Query: KSVC-ETPFELWSGRKGSLHHFRIWGCP--THVLVSNPKKLEPRLKLCLFVGYPKETRGGLFYDPRENRVLVSTNAIFIEEDHVRDHLPRSKIVLN
+ E P +W+ ++ S H +++GC HV KL+ + C+F+GY E G +DP + +V+ S + +F E VR S+ V N
Subjt: KSVC-ETPFELWSGRKGSLHHFRIWGCP--THVLVSNPKKLEPRLKLCLFVGYPKETRGGLFYDPRENRVLVSTNAIFIEEDHVRDHLPRSKIVLN
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| Q12491 Transposon Ty2-B Gag-Pol polyprotein | 1.1e-15 | 24.32 | Show/hide |
Query: GHINLNRIEKLVKSGLLNEFEENSLP-------VCESCLEGKMTKRPFSGKGYRAK-----EPLELVHSDLYGPMNAKARGGYEYFVSFIDDYSRYGYIY
GH N I+K +K + +E+ + C CL GK TK KG R K EP + +H+D++GP++ + YF+SF D+ +R+ ++Y
Subjt: GHINLNRIEKLVKSGLLNEFEENSLP-------VCESCLEGKMTKRPFSGKGYRAK-----EPLELVHSDLYGPMNAKARGGYEYFVSFIDDYSRYGYIY
Query: LMHKKFE--TLEKFKEYKTEVENLLGKSLKTLRSDRAPGMPQQ-----------------------NGVSGRRNRTLLDMVRSMMSYARLPDSFWGYAVE
+H + E L F ++N + ++ DR + +GV+ R NRTLL+ R+++ + LP+ W AVE
Subjt: LMHKKFE--TLEKFKEYKTEVENLLGKSLKTLRSDRAPGMPQQ-----------------------NGVSGRRNRTLLDMVRSMMSYARLPDSFWGYAVE
Query: TAVYILNNVPSKSVCETPFELWSGRKG-SLHHFRIWGCPTHVLVSNP-KKLEPRLKLCLFVGYPKETRGGLFYDPRENRVLVSTNAIFIEED
+ I N++ S ++ + +G G + +G P V NP K+ PR + + + G + Y P + + +TN + ++++
Subjt: TAVYILNNVPSKSVCETPFELWSGRKG-SLHHFRIWGCPTHVLVSNP-KKLEPRLKLCLFVGYPKETRGGLFYDPRENRVLVSTNAIFIEED
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| Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1 | 9.4e-26 | 27.02 | Show/hide |
Query: CESCLEGKMTKRPFSGKGYRAKEPLELVHSDLYGPMNAKARGGYEYFVSFIDDYSRYGYIYLMHKKFETLEKFKEYKTEVENLLGKSLKTLRSDRA----
C CL K K PFS + PLE ++SD++ + Y Y+V F+D ++RY ++Y + +K + E F +K +EN + T SD
Subjt: CESCLEGKMTKRPFSGKGYRAKEPLELVHSDLYGPMNAKARGGYEYFVSFIDDYSRYGYIYLMHKKFETLEKFKEYKTEVENLLGKSLKTLRSDRA----
Query: -----------------PGMPQQNGVSGRRNRTLLDMVRSMMSYARLPDSFWGYAVETAVYILNNVPSKSV-CETPFELWSGRKGSLHHFRIWGCPTHVL
P P+ NG+S R++R +++ +++S+A +P ++W YA AVY++N +P+ + E+PF+ G + R++GC +
Subjt: -----------------PGMPQQNGVSGRRNRTLLDMVRSMMSYARLPDSFWGYAVETAVYILNNVPSKSV-CETPFELWSGRKGSLHHFRIWGCPTHVL
Query: VS--NPKKLEPRLKLCLFVGYPKETRGGLFYDPRENRVLVSTNAIFIE
+ N KL+ + + C+F+GY L + +R+ +S + F E
Subjt: VS--NPKKLEPRLKLCLFVGYPKETRGGLFYDPRENRVLVSTNAIFIE
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| Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2 | 6.1e-25 | 27.31 | Show/hide |
Query: GHINLNRIEKLVKSGLLNEFE-ENSLPVCESCLEGKMTKRPFSGKGYRAKEPLELVHSDLYGPMNAKARGGYEYFVSFIDDYSRYGYIYLMHKKFETLEK
GH +L + ++ + L + L C C K K PFS + +PLE ++SD++ + Y Y+V F+D ++RY ++Y + +K + +
Subjt: GHINLNRIEKLVKSGLLNEFE-ENSLPVCESCLEGKMTKRPFSGKGYRAKEPLELVHSDLYGPMNAKARGGYEYFVSFIDDYSRYGYIYLMHKKFETLEK
Query: FKEYKTEVENLLGKSLKTLRSDRA---------------------PGMPQQNGVSGRRNRTLLDMVRSMMSYARLPDSFWGYAVETAVYILNNVPSKSV-
F +K+ VEN + TL SD P P+ NG+S R++R +++M +++S+A +P ++W YA AVY++N +P+ +
Subjt: FKEYKTEVENLLGKSLKTLRSDRA---------------------PGMPQQNGVSGRRNRTLLDMVRSMMSYARLPDSFWGYAVETAVYILNNVPSKSV-
Query: CETPFELWSGRKGSLHHFRIWGCPTHVLVS--NPKKLEPRLKLCLFVGY
++PF+ G+ + +++GC + + N KLE + K C F+GY
Subjt: CETPFELWSGRKGSLHHFRIWGCPTHVLVS--NPKKLEPRLKLCLFVGY
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