CuGenDBv2

Gene ID	Tan0007669
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Gag/pol protein
Genome location	LG06:57885119..57885745
RNA-Seq Expression	Tan0007669
Synteny	Tan0007669
Gene Ontology terms	GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008234 - cysteine-type peptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR001878 - Zinc finger, CCHC-type IPR036875 - Zinc finger, CCHC-type superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0044955.1 gag/pol protein [Cucumis melo var. makuwa]

1.3e-63

63.81

Show/hide

Query:  MSDILAKKHKGMITAKEIMDLVQGIFGQQSTQARHNALKYIFHSRMPEGSSVRDHVLDMMVHFNNAESNGASIDESSQVSFILETLPDSFLQFRSNVVMN
        +S++LAKKH+ M+TA+EIMD +Q +FGQ S Q +H+ALKYI+++RM EG+SVR+HVL+MMVHFN AE NGA IDE+SQVSFILE+LP+SFLQFRSN VMN
Subjt:  MSDILAKKHKGMITAKEIMDLVQGIFGQQSTQARHNALKYIFHSRMPEGSSVRDHVLDMMVHFNNAESNGASIDESSQVSFILETLPDSFLQFRSNVVMN

Query:  KLTFNLTSLLNKLHFFQSLMKIQGSKGETNVA--SRSYHRGSTFGTKTVASSSSNLKGKKKNMKKVGKGKRADKTAAQKGKKVKEVVDKGKCFHCNKDGH
        K+ + LT+LLN+L  F+SLMKI+G KGE NVA  +R +HRGST GTK++ SSS N K KK   KK G+G +A+  AA+  KK K    KG CFHCN++GH
Subjt:  KLTFNLTSLLNKLHFFQSLMKIQGSKGETNVA--SRSYHRGSTFGTKTVASSSSNLKGKKKNMKKVGKGKRADKTAAQKGKKVKEVVDKGKCFHCNKDGH

Query:  WKRNCPKYIA
        WKRNCPKY+A
Subjt:  WKRNCPKYIA

KAA0048404.1 gag/pol protein [Cucumis melo var. makuwa]

1.3e-63

63.81

Show/hide

Query:  MSDILAKKHKGMITAKEIMDLVQGIFGQQSTQARHNALKYIFHSRMPEGSSVRDHVLDMMVHFNNAESNGASIDESSQVSFILETLPDSFLQFRSNVVMN
        +S++LAKKH+ M+TA+EIMD +Q +FGQ S Q +H+ALKYI+++RM EG+SVR+HVL+MMVHFN AE NGA IDE+SQVSFILE+LP+SFLQFRSN VMN
Subjt:  MSDILAKKHKGMITAKEIMDLVQGIFGQQSTQARHNALKYIFHSRMPEGSSVRDHVLDMMVHFNNAESNGASIDESSQVSFILETLPDSFLQFRSNVVMN

Query:  KLTFNLTSLLNKLHFFQSLMKIQGSKGETNVA--SRSYHRGSTFGTKTVASSSSNLKGKKKNMKKVGKGKRADKTAAQKGKKVKEVVDKGKCFHCNKDGH
        K+ + LT+LLN+L  F+SLMKI+G KGE NVA  +R +HRGST GTK++ SSS N K KK   KK G+G +A+  AA+  KK K    KG CFHCN++GH
Subjt:  KLTFNLTSLLNKLHFFQSLMKIQGSKGETNVA--SRSYHRGSTFGTKTVASSSSNLKGKKKNMKKVGKGKRADKTAAQKGKKVKEVVDKGKCFHCNKDGH

Query:  WKRNCPKYIA
        WKRNCPKY+A
Subjt:  WKRNCPKYIA

KAA0051952.1 gag/pol protein [Cucumis melo var. makuwa]

1.3e-63

63.81

Show/hide

Query:  MSDILAKKHKGMITAKEIMDLVQGIFGQQSTQARHNALKYIFHSRMPEGSSVRDHVLDMMVHFNNAESNGASIDESSQVSFILETLPDSFLQFRSNVVMN
        +S++LAKKH+ M+TA+EIMD +Q +FGQ S Q +H+ALKYI+++RM EG+SVR+HVL+MMVHFN AE NGA IDE+SQVSFILE+LP+SFLQFRSN VMN
Subjt:  MSDILAKKHKGMITAKEIMDLVQGIFGQQSTQARHNALKYIFHSRMPEGSSVRDHVLDMMVHFNNAESNGASIDESSQVSFILETLPDSFLQFRSNVVMN

Query:  KLTFNLTSLLNKLHFFQSLMKIQGSKGETNVA--SRSYHRGSTFGTKTVASSSSNLKGKKKNMKKVGKGKRADKTAAQKGKKVKEVVDKGKCFHCNKDGH
        K+ + LT+LLN+L  F+SLMKI+G KGE NVA  +R +HRGST GTK++ SSS N K KK   KK G+G +A+  AA+  KK K    KG CFHCN++GH
Subjt:  KLTFNLTSLLNKLHFFQSLMKIQGSKGETNVA--SRSYHRGSTFGTKTVASSSSNLKGKKKNMKKVGKGKRADKTAAQKGKKVKEVVDKGKCFHCNKDGH

Query:  WKRNCPKYIA
        WKRNCPKY+A
Subjt:  WKRNCPKYIA

KAA0054490.1 gag/pol protein [Cucumis melo var. makuwa]

1.3e-63

63.81

Show/hide

Query:  MSDILAKKHKGMITAKEIMDLVQGIFGQQSTQARHNALKYIFHSRMPEGSSVRDHVLDMMVHFNNAESNGASIDESSQVSFILETLPDSFLQFRSNVVMN
        +S++LAKKH+ M+TA+EIMD +Q +FGQ S Q +H+ALKYI+++RM EG+SVR+HVL+MMVHFN AE NGA IDE+SQVSFILE+LP+SFLQFRSN VMN
Subjt:  MSDILAKKHKGMITAKEIMDLVQGIFGQQSTQARHNALKYIFHSRMPEGSSVRDHVLDMMVHFNNAESNGASIDESSQVSFILETLPDSFLQFRSNVVMN

Query:  KLTFNLTSLLNKLHFFQSLMKIQGSKGETNVA--SRSYHRGSTFGTKTVASSSSNLKGKKKNMKKVGKGKRADKTAAQKGKKVKEVVDKGKCFHCNKDGH
        K+ + LT+LLN+L  F+SLMKI+G KGE NVA  +R +HRGST GTK++ SSS N K KK   KK G+G +A+  AA+  KK K    KG CFHCN++GH
Subjt:  KLTFNLTSLLNKLHFFQSLMKIQGSKGETNVA--SRSYHRGSTFGTKTVASSSSNLKGKKKNMKKVGKGKRADKTAAQKGKKVKEVVDKGKCFHCNKDGH

Query:  WKRNCPKYIA
        WKRNCPKY+A
Subjt:  WKRNCPKYIA

TYK14550.1 gag/pol protein [Cucumis melo var. makuwa]

1.3e-63

63.81

Show/hide

Query:  MSDILAKKHKGMITAKEIMDLVQGIFGQQSTQARHNALKYIFHSRMPEGSSVRDHVLDMMVHFNNAESNGASIDESSQVSFILETLPDSFLQFRSNVVMN
        +S++LAKKH+ M+TA+EIMD +Q +FGQ S Q +H+ALKYI+++RM EG+SVR+HVL+MMVHFN AE NGA IDE+SQVSFILE+LP+SFLQFRSN VMN
Subjt:  MSDILAKKHKGMITAKEIMDLVQGIFGQQSTQARHNALKYIFHSRMPEGSSVRDHVLDMMVHFNNAESNGASIDESSQVSFILETLPDSFLQFRSNVVMN

Query:  KLTFNLTSLLNKLHFFQSLMKIQGSKGETNVA--SRSYHRGSTFGTKTVASSSSNLKGKKKNMKKVGKGKRADKTAAQKGKKVKEVVDKGKCFHCNKDGH
        K+ + LT+LLN+L  F+SLMKI+G KGE NVA  +R +HRGST GTK++ SSS N K KK   KK G+G +A+  AA+  KK K    KG CFHCN++GH
Subjt:  KLTFNLTSLLNKLHFFQSLMKIQGSKGETNVA--SRSYHRGSTFGTKTVASSSSNLKGKKKNMKKVGKGKRADKTAAQKGKKVKEVVDKGKCFHCNKDGH

Query:  WKRNCPKYIA
        WKRNCPKY+A
Subjt:  WKRNCPKYIA

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SMH8 Gag/pol protein

6.1e-64

63.81

Show/hide

Query:  MSDILAKKHKGMITAKEIMDLVQGIFGQQSTQARHNALKYIFHSRMPEGSSVRDHVLDMMVHFNNAESNGASIDESSQVSFILETLPDSFLQFRSNVVMN
        +S++LAKKH+ M+TA+EIMD +Q +FGQ S Q +H+ALKYI+++RM EG+SVR+HVL+MMVHFN AE NGA IDE+SQVSFILE+LP+SFLQFRSN VMN
Subjt:  MSDILAKKHKGMITAKEIMDLVQGIFGQQSTQARHNALKYIFHSRMPEGSSVRDHVLDMMVHFNNAESNGASIDESSQVSFILETLPDSFLQFRSNVVMN

Query:  KLTFNLTSLLNKLHFFQSLMKIQGSKGETNVA--SRSYHRGSTFGTKTVASSSSNLKGKKKNMKKVGKGKRADKTAAQKGKKVKEVVDKGKCFHCNKDGH
        K+ + LT+LLN+L  F+SLMKI+G KGE NVA  +R +HRGST GTK++ SSS N K KK   KK G+G +A+  AA+  KK K    KG CFHCN++GH
Subjt:  KLTFNLTSLLNKLHFFQSLMKIQGSKGETNVA--SRSYHRGSTFGTKTVASSSSNLKGKKKNMKKVGKGKRADKTAAQKGKKVKEVVDKGKCFHCNKDGH

Query:  WKRNCPKYIA
        WKRNCPKY+A
Subjt:  WKRNCPKYIA

A0A5A7TU93 Gag/pol protein

6.1e-64

63.81

Show/hide

Query:  MSDILAKKHKGMITAKEIMDLVQGIFGQQSTQARHNALKYIFHSRMPEGSSVRDHVLDMMVHFNNAESNGASIDESSQVSFILETLPDSFLQFRSNVVMN
        +S++LAKKH+ M+TA+EIMD +Q +FGQ S Q +H+ALKYI+++RM EG+SVR+HVL+MMVHFN AE NGA IDE+SQVSFILE+LP+SFLQFRSN VMN
Subjt:  MSDILAKKHKGMITAKEIMDLVQGIFGQQSTQARHNALKYIFHSRMPEGSSVRDHVLDMMVHFNNAESNGASIDESSQVSFILETLPDSFLQFRSNVVMN

Query:  KLTFNLTSLLNKLHFFQSLMKIQGSKGETNVA--SRSYHRGSTFGTKTVASSSSNLKGKKKNMKKVGKGKRADKTAAQKGKKVKEVVDKGKCFHCNKDGH
        K+ + LT+LLN+L  F+SLMKI+G KGE NVA  +R +HRGST GTK++ SSS N K KK   KK G+G +A+  AA+  KK K    KG CFHCN++GH
Subjt:  KLTFNLTSLLNKLHFFQSLMKIQGSKGETNVA--SRSYHRGSTFGTKTVASSSSNLKGKKKNMKKVGKGKRADKTAAQKGKKVKEVVDKGKCFHCNKDGH

Query:  WKRNCPKYIA
        WKRNCPKY+A
Subjt:  WKRNCPKYIA

A0A5A7TWB9 Gag/pol protein

6.1e-64

63.81

Show/hide

Query:  MSDILAKKHKGMITAKEIMDLVQGIFGQQSTQARHNALKYIFHSRMPEGSSVRDHVLDMMVHFNNAESNGASIDESSQVSFILETLPDSFLQFRSNVVMN
        +S++LAKKH+ M+TA+EIMD +Q +FGQ S Q +H+ALKYI+++RM EG+SVR+HVL+MMVHFN AE NGA IDE+SQVSFILE+LP+SFLQFRSN VMN
Subjt:  MSDILAKKHKGMITAKEIMDLVQGIFGQQSTQARHNALKYIFHSRMPEGSSVRDHVLDMMVHFNNAESNGASIDESSQVSFILETLPDSFLQFRSNVVMN

Query:  KLTFNLTSLLNKLHFFQSLMKIQGSKGETNVA--SRSYHRGSTFGTKTVASSSSNLKGKKKNMKKVGKGKRADKTAAQKGKKVKEVVDKGKCFHCNKDGH
        K+ + LT+LLN+L  F+SLMKI+G KGE NVA  +R +HRGST GTK++ SSS N K KK   KK G+G +A+  AA+  KK K    KG CFHCN++GH
Subjt:  KLTFNLTSLLNKLHFFQSLMKIQGSKGETNVA--SRSYHRGSTFGTKTVASSSSNLKGKKKNMKKVGKGKRADKTAAQKGKKVKEVVDKGKCFHCNKDGH

Query:  WKRNCPKYIA
        WKRNCPKY+A
Subjt:  WKRNCPKYIA

A0A5A7V4M1 Gag/pol protein

6.1e-64

63.81

Show/hide

Query:  MSDILAKKHKGMITAKEIMDLVQGIFGQQSTQARHNALKYIFHSRMPEGSSVRDHVLDMMVHFNNAESNGASIDESSQVSFILETLPDSFLQFRSNVVMN
        +S++LAKKH+ M+TA+EIMD +Q +FGQ S Q +H+ALKYI+++RM EG+SVR+HVL+MMVHFN AE NGA IDE+SQVSFILE+LP+SFLQFRSN VMN
Subjt:  MSDILAKKHKGMITAKEIMDLVQGIFGQQSTQARHNALKYIFHSRMPEGSSVRDHVLDMMVHFNNAESNGASIDESSQVSFILETLPDSFLQFRSNVVMN

Query:  KLTFNLTSLLNKLHFFQSLMKIQGSKGETNVA--SRSYHRGSTFGTKTVASSSSNLKGKKKNMKKVGKGKRADKTAAQKGKKVKEVVDKGKCFHCNKDGH
        K+ + LT+LLN+L  F+SLMKI+G KGE NVA  +R +HRGST GTK++ SSS N K KK   KK G+G +A+  AA+  KK K    KG CFHCN++GH
Subjt:  KLTFNLTSLLNKLHFFQSLMKIQGSKGETNVA--SRSYHRGSTFGTKTVASSSSNLKGKKKNMKKVGKGKRADKTAAQKGKKVKEVVDKGKCFHCNKDGH

Query:  WKRNCPKYIA
        WKRNCPKY+A
Subjt:  WKRNCPKYIA

A0A5D3CPJ6 Gag/pol protein

6.1e-64

63.81

Show/hide

Query:  MSDILAKKHKGMITAKEIMDLVQGIFGQQSTQARHNALKYIFHSRMPEGSSVRDHVLDMMVHFNNAESNGASIDESSQVSFILETLPDSFLQFRSNVVMN
        +S++LAKKH+ M+TA+EIMD +Q +FGQ S Q +H+ALKYI+++RM EG+SVR+HVL+MMVHFN AE NGA IDE+SQVSFILE+LP+SFLQFRSN VMN
Subjt:  MSDILAKKHKGMITAKEIMDLVQGIFGQQSTQARHNALKYIFHSRMPEGSSVRDHVLDMMVHFNNAESNGASIDESSQVSFILETLPDSFLQFRSNVVMN

Query:  KLTFNLTSLLNKLHFFQSLMKIQGSKGETNVA--SRSYHRGSTFGTKTVASSSSNLKGKKKNMKKVGKGKRADKTAAQKGKKVKEVVDKGKCFHCNKDGH
        K+ + LT+LLN+L  F+SLMKI+G KGE NVA  +R +HRGST GTK++ SSS N K KK   KK G+G +A+  AA+  KK K    KG CFHCN++GH
Subjt:  KLTFNLTSLLNKLHFFQSLMKIQGSKGETNVA--SRSYHRGSTFGTKTVASSSSNLKGKKKNMKKVGKGKRADKTAAQKGKKVKEVVDKGKCFHCNKDGH

Query:  WKRNCPKYIA
        WKRNCPKY+A
Subjt:  WKRNCPKYIA

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

Show/hide CDS sequence

ATGTCAGACATATTAGCCAAGAAGCATAAGGGCATGATAACTGCTAAGGAAATCATGGATTTGGTGCAGGGTATATTTGGACAACAATCCACACAGGCCCGACACAATGC
CCTCAAGTACATATTCCACTCAAGGATGCCAGAGGGTTCATCTGTTCGAGATCATGTCCTGGATATGATGGTACACTTTAACAACGCGGAGTCGAATGGTGCTTCCATCG
ATGAATCGAGCCAGGTCAGCTTCATTCTGGAAACCCTTCCAGATAGTTTCCTACAGTTTAGAAGTAATGTTGTTATGAACAAGCTTACTTTTAATCTCACCTCCCTTCTT
AATAAACTCCATTTCTTTCAATCTTTGATGAAAATTCAGGGATCGAAAGGTGAGACAAATGTTGCCAGTAGGAGTTATCACAGAGGTTCGACCTTTGGAACAAAAACAGT
AGCTTCATCTTCTTCTAACCTTAAAGGGAAGAAGAAGAACATGAAGAAGGTTGGTAAAGGGAAACGAGCTGACAAAACTGCCGCCCAGAAGGGCAAGAAAGTCAAAGAAG
TTGTAGATAAAGGAAAGTGTTTCCACTGCAACAAAGACGGGCATTGGAAACGGAACTGTCCGAAGTACATTGCATAA

mRNA sequence

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Protein sequence

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MSDILAKKHKGMITAKEIMDLVQGIFGQQSTQARHNALKYIFHSRMPEGSSVRDHVLDMMVHFNNAESNGASIDESSQVSFILETLPDSFLQFRSNVVMNKLTFNLTSLL
NKLHFFQSLMKIQGSKGETNVASRSYHRGSTFGTKTVASSSSNLKGKKKNMKKVGKGKRADKTAAQKGKKVKEVVDKGKCFHCNKDGHWKRNCPKYIA

Tan0007669 (gene) of Snake gourd v1 genome