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Tan0007678 (gene) of Snake gourd v1 genome

Gene IDTan0007678
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationLG09:565382..588717
RNA-Seq ExpressionTan0007678
SyntenyTan0007678
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0110165 - cellular anatomical structure (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033245.1 uncharacterized protein E6C27_scaffold845G00400 [Cucumis melo var. makuwa]2.0e-1566.2Show/hide
Query:  KDETSASLAGGKVSKDMDVPSPPILRYVPLSRRKKGKSPFAECSRNLKVGDIEILKENFITPLTKITKQEV
        K E S S A   +  D    +PPILRYVPLSRRKKG+SPF E  + LKVGDIEILKE F TPLTKITKQE+
Subjt:  KDETSASLAGGKVSKDMDVPSPPILRYVPLSRRKKGKSPFAECSRNLKVGDIEILKENFITPLTKITKQEV

KAA0033768.1 uncharacterized protein E6C27_scaffold142G00210 [Cucumis melo var. makuwa]3.3e-1563.38Show/hide
Query:  KDETSASLAGGKVSKDMDVPSPPILRYVPLSRRKKGKSPFAECSRNLKVGDIEILKENFITPLTKITKQEV
        K ETS S     +  D    +PPILRYVPLS+RKKG+SPF E  + LKVGDIE+LKE+F TPLTKITKQE+
Subjt:  KDETSASLAGGKVSKDMDVPSPPILRYVPLSRRKKGKSPFAECSRNLKVGDIEILKENFITPLTKITKQEV

KAA0051585.1 uncharacterized protein E6C27_scaffold174G001280 [Cucumis melo var. makuwa]5.7e-1545.13Show/hide
Query:  EETVEFVSCHVINTNEDPSSSTMKVIELETSSTFSVEDLFPIKDETSASLAGGKVSKDMDVPSPPILRYVPLSRRKKGKSPFAECSRNLKVGDIEILKEN
        + ++E VS  V+  N + +     +   E     S+      K E S + A   +  D    +PPILRYVPLSRRKKG+SPF E  + LKVG+IE+LKE+
Subjt:  EETVEFVSCHVINTNEDPSSSTMKVIELETSSTFSVEDLFPIKDETSASLAGGKVSKDMDVPSPPILRYVPLSRRKKGKSPFAECSRNLKVGDIEILKEN

Query:  FITPLTKITKQEV
        F TPLTKITKQE+
Subjt:  FITPLTKITKQEV

KAA0054591.1 gypsy-like retrotransposase [Cucumis melo var. makuwa]4.3e-1565.71Show/hide
Query:  KDETSASLAGGKVSKDMDVPSPPILRYVPLSRRKKGKSPFAECSRNLKVGDIEILKENFITPLTKITKQE
        K E S S A   +  D    +PPILRYVPLSRRKKG+SPF E S+ LKVGDIE+L+E+F TPLTKITKQE
Subjt:  KDETSASLAGGKVSKDMDVPSPPILRYVPLSRRKKGKSPFAECSRNLKVGDIEILKENFITPLTKITKQE

KAA0061113.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.5e-1564.79Show/hide
Query:  KDETSASLAGGKVSKDMDVPSPPILRYVPLSRRKKGKSPFAECSRNLKVGDIEILKENFITPLTKITKQEV
        K E S S A   +  D    +PPILRYVPLSRRKKG+SPF E  + LKVGDIE+LKE+F TPLTKITKQE+
Subjt:  KDETSASLAGGKVSKDMDVPSPPILRYVPLSRRKKGKSPFAECSRNLKVGDIEILKENFITPLTKITKQEV

TrEMBL top hitse value%identityAlignment
A0A5A7ST30 Uncharacterized protein1.6e-1563.38Show/hide
Query:  KDETSASLAGGKVSKDMDVPSPPILRYVPLSRRKKGKSPFAECSRNLKVGDIEILKENFITPLTKITKQEV
        K ETS S     +  D    +PPILRYVPLS+RKKG+SPF E  + LKVGDIE+LKE+F TPLTKITKQE+
Subjt:  KDETSASLAGGKVSKDMDVPSPPILRYVPLSRRKKGKSPFAECSRNLKVGDIEILKENFITPLTKITKQEV

A0A5A7SVR4 Uncharacterized protein9.4e-1666.2Show/hide
Query:  KDETSASLAGGKVSKDMDVPSPPILRYVPLSRRKKGKSPFAECSRNLKVGDIEILKENFITPLTKITKQEV
        K E S S A   +  D    +PPILRYVPLSRRKKG+SPF E  + LKVGDIEILKE F TPLTKITKQE+
Subjt:  KDETSASLAGGKVSKDMDVPSPPILRYVPLSRRKKGKSPFAECSRNLKVGDIEILKENFITPLTKITKQEV

A0A5A7UD46 Uncharacterized protein2.7e-1545.13Show/hide
Query:  EETVEFVSCHVINTNEDPSSSTMKVIELETSSTFSVEDLFPIKDETSASLAGGKVSKDMDVPSPPILRYVPLSRRKKGKSPFAECSRNLKVGDIEILKEN
        + ++E VS  V+  N + +     +   E     S+      K E S + A   +  D    +PPILRYVPLSRRKKG+SPF E  + LKVG+IE+LKE+
Subjt:  EETVEFVSCHVINTNEDPSSSTMKVIELETSSTFSVEDLFPIKDETSASLAGGKVSKDMDVPSPPILRYVPLSRRKKGKSPFAECSRNLKVGDIEILKEN

Query:  FITPLTKITKQEV
        F TPLTKITKQE+
Subjt:  FITPLTKITKQEV

A0A5A7UM27 Gypsy-like retrotransposase2.1e-1565.71Show/hide
Query:  KDETSASLAGGKVSKDMDVPSPPILRYVPLSRRKKGKSPFAECSRNLKVGDIEILKENFITPLTKITKQE
        K E S S A   +  D    +PPILRYVPLSRRKKG+SPF E S+ LKVGDIE+L+E+F TPLTKITKQE
Subjt:  KDETSASLAGGKVSKDMDVPSPPILRYVPLSRRKKGKSPFAECSRNLKVGDIEILKENFITPLTKITKQE

A0A5D3BY54 Ty3-gypsy retrotransposon protein1.2e-1564.79Show/hide
Query:  KDETSASLAGGKVSKDMDVPSPPILRYVPLSRRKKGKSPFAECSRNLKVGDIEILKENFITPLTKITKQEV
        K E S S A   +  D    +PPILRYVPLSRRKKG+SPF E  + LKVGDIE+LKE+F TPLTKITKQE+
Subjt:  KDETSASLAGGKVSKDMDVPSPPILRYVPLSRRKKGKSPFAECSRNLKVGDIEILKENFITPLTKITKQEV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAGGGTCAGGCCCTTTGTTCAAGTCCCGGTTTGCTAAGTTAAGTCCCCAACCATTCACTCAGTCTTGTCCCCACGAAGGTAGGCATATTGAGTCGACGAATCTAGC
CACTCTCACCTATACTAGTCAAACGAAAATCCCTCGCAAACAGGATTTCGTAACCTGCTCTGGATTGAGATCAAGTTGCCTAGAAGTTATCCGAGAAGAAACAGTTGAGT
TTGTTTCATGCCATGTTATCAACACTAATGAAGATCCGTCAAGTTCGACGATGAAGGTAATCGAGCTAGAAACCTCATCGACCTTCAGCGTAGAAGACTTGTTTCCTATA
AAAGATGAAACCTCAGCAAGCCTGGCAGGGGGCAAAGTTTCAAAAGATATGGACGTCCCAAGTCCTCCTATTTTGCGCTATGTTCCTCTATCAAGACGCAAGAAAGGAAA
ATCACCTTTTGCAGAATGTTCAAGAAATTTGAAGGTTGGTGATATTGAAATCCTGAAAGAGAACTTTATCACACCTCTTACCAAGATAACAAAGCAAGAGGTCAATAAAC
CTGATGATGGATAA
mRNA sequenceShow/hide mRNA sequence
ATGAGAGGGTCAGGCCCTTTGTTCAAGTCCCGGTTTGCTAAGTTAAGTCCCCAACCATTCACTCAGTCTTGTCCCCACGAAGGTAGGCATATTGAGTCGACGAATCTAGC
CACTCTCACCTATACTAGTCAAACGAAAATCCCTCGCAAACAGGATTTCGTAACCTGCTCTGGATTGAGATCAAGTTGCCTAGAAGTTATCCGAGAAGAAACAGTTGAGT
TTGTTTCATGCCATGTTATCAACACTAATGAAGATCCGTCAAGTTCGACGATGAAGGTAATCGAGCTAGAAACCTCATCGACCTTCAGCGTAGAAGACTTGTTTCCTATA
AAAGATGAAACCTCAGCAAGCCTGGCAGGGGGCAAAGTTTCAAAAGATATGGACGTCCCAAGTCCTCCTATTTTGCGCTATGTTCCTCTATCAAGACGCAAGAAAGGAAA
ATCACCTTTTGCAGAATGTTCAAGAAATTTGAAGGTTGGTGATATTGAAATCCTGAAAGAGAACTTTATCACACCTCTTACCAAGATAACAAAGCAAGAGGTCAATAAAC
CTGATGATGGATAA
Protein sequenceShow/hide protein sequence
MRGSGPLFKSRFAKLSPQPFTQSCPHEGRHIESTNLATLTYTSQTKIPRKQDFVTCSGLRSSCLEVIREETVEFVSCHVINTNEDPSSSTMKVIELETSSTFSVEDLFPI
KDETSASLAGGKVSKDMDVPSPPILRYVPLSRRKKGKSPFAECSRNLKVGDIEILKENFITPLTKITKQEVNKPDDG