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Tan0007713 (gene) of Snake gourd v1 genome

Gene IDTan0007713
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionReverse transcriptase
Genome locationLG06:45635806..45636946
RNA-Seq ExpressionTan0007713
SyntenyTan0007713
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
RVW26218.1 Gag-Pol polyprotein [Vitis vinifera]1.3e-3146.2Show/hide
Query:  MIDILNDVVDSFRELVLFVDPLATCMTNSMLDQLGKL--DHEVTYCNESLNQLP------KLQYEQFSQLHINK-VEEAKPPILELKQLPTHIRYAFLGD
        ++ +L+ VV           PL  C+ N     LG L  D ++  C  +L+ LP      KL++E+   +H+N    + +PP LELK LP+H+R+AFL D
Subjt:  MIDILNDVVDSFRELVLFVDPLATCMTNSMLDQLGKL--DHEVTYCNESLNQLP------KLQYEQFSQLHINK-VEEAKPPILELKQLPTHIRYAFLGD

Query:  LSTYPVIISADLNKEEEEKLLRILRSHKSALGWSISDIKGISPSVVMHKILMEDTFSPSVEHQRRLNPAMK
         S YP+IIS+ LN  EEEKLLR+LR HK  +GW+I DIKGISPS+ MHKIL E+++ P+V+ QRRLNP+M+
Subjt:  LSTYPVIISADLNKEEEEKLLRILRSHKSALGWSISDIKGISPSVVMHKILMEDTFSPSVEHQRRLNPAMK

RVW68547.1 hypothetical protein CK203_063695 [Vitis vinifera]2.0e-3247.65Show/hide
Query:  IDILNDVVDSFRELVLFVDPLATCMTNSMLDQLGKL--DHEVTYCNESLNQLP------KLQYEQFSQLHINK-VEEAKPPILELKQLPTHIRYAFLGDL
        I +L+ VV +         PL  C+ N     LG L  D ++  C  +L+ LP      KL++E+   +H+N    + +PP LELK LP+H+RYAFL D 
Subjt:  IDILNDVVDSFRELVLFVDPLATCMTNSMLDQLGKL--DHEVTYCNESLNQLP------KLQYEQFSQLHINK-VEEAKPPILELKQLPTHIRYAFLGDL

Query:  STYPVIISADLNKEEEEKLLRILRSHKSALGWSISDIKGISPSVVMHKILMEDTFSPSVEHQRRLNPAMK
        S YPVII++ LN  EEEKLLR+LR HK A+GW+I DIKGISPS+ MHK+L E+ + P+V+ QRRLNP+M+
Subjt:  STYPVIISADLNKEEEEKLLRILRSHKSALGWSISDIKGISPSVVMHKILMEDTFSPSVEHQRRLNPAMK

XP_022843127.1 uncharacterized protein LOC111366646 [Olea europaea var. sylvestris]1.7e-3156Show/hide
Query:  CNESLNQLPKLQYEQFSQLHINKVEE------AKPPILELKQLPTHIRYAFLGDLSTYPVIISADLNKEEEEKLLRILRSHKSALGWSISDIKGISPSVV
        C++  +   ++ +  F+   I K EE      ++   +ELKQLP H+RYAFLGD S +PVIIS+ LN++EE+KLL++LR HK+ALGWSI+DI+GISP+V 
Subjt:  CNESLNQLPKLQYEQFSQLHINKVEE------AKPPILELKQLPTHIRYAFLGDLSTYPVIISADLNKEEEEKLLRILRSHKSALGWSISDIKGISPSVV

Query:  MHKILMEDTFSPSVEHQRRLNPAMK
        MHKILMED++ PS+EHQRRLNP MK
Subjt:  MHKILMEDTFSPSVEHQRRLNPAMK

XP_023874613.1 uncharacterized protein LOC111987139 [Quercus suber]9.9e-3257.72Show/hide
Query:  EVTYCNESLNQLPKLQYEQFSQLHINKVEEAKPPILELKQLPTHIRYAFLGDLSTYPVIISADLNKEEEEKLLRILRSHKSALGWSISDIKGISPSVVMH
        +VT  ++ + +L  +  +  S +   KV++   P  ELKQLP H+RYAFLGD  T+PVI++A L  EEEE+LLR+LR H++ALGW+ISDIKGISPS+ MH
Subjt:  EVTYCNESLNQLPKLQYEQFSQLHINKVEEAKPPILELKQLPTHIRYAFLGDLSTYPVIISADLNKEEEEKLLRILRSHKSALGWSISDIKGISPSVVMH

Query:  KILMEDTFSPSVEHQRRLNPAMK
        KILME+ + PS+EHQRRLNPAMK
Subjt:  KILMEDTFSPSVEHQRRLNPAMK

XP_034899370.1 LOW QUALITY PROTEIN: uncharacterized protein LOC118037487 [Populus alba]2.4e-3351.57Show/hide
Query:  VVDSF--RELVLFVDPLATCMTNSMLDQLGKLDHEVTYCNESLNQLPKLQYEQFSQ--LHINKVEEAKPPILELKQLPTHIRYAFLGDLSTYPVIISADL
        VVDS    ++ L  DPL  C+ N++L++  ++  E T   +S     +  +E   Q  L I    E + P+LEL+ LP H+RYA+LG+ STYPVI+S  L
Subjt:  VVDSF--RELVLFVDPLATCMTNSMLDQLGKLDHEVTYCNESLNQLPKLQYEQFSQ--LHINKVEEAKPPILELKQLPTHIRYAFLGDLSTYPVIISADL

Query:  NKEEEEKLLRILRSHKSALGWSISDIKGISPSVVMHKILMEDTFSPSVEHQRRLNPAMK
        +K EEEKLLR+LR HK+ALGW ++DIKGISPS+ MHKIL+ED   P+VEHQRRLNP MK
Subjt:  NKEEEEKLLRILRSHKSALGWSISDIKGISPSVVMHKILMEDTFSPSVEHQRRLNPAMK

TrEMBL top hitse value%identityAlignment
A0A1R3HRV0 Integrase, catalytic core1.7e-2942.51Show/hide
Query:  IDILNDVVDSFRELVLFVDPLATCMTNSMLDQLGKLDH--EVTYCNESLNQLPKLQYEQFSQLHINKVEE----AKPPILELKQLPTHIRYAFLGDLSTY
        ++++NDV++     + + +P+  C+ +S LD+    D   E  +  E     P  +  QF +L   K +       PP LELKQLP H+ YA+LG+ +T 
Subjt:  IDILNDVVDSFRELVLFVDPLATCMTNSMLDQLGKLDH--EVTYCNESLNQLPKLQYEQFSQLHINKVEE----AKPPILELKQLPTHIRYAFLGDLSTY

Query:  PVIISADLNKEEEEKLLRILRSHKSALGWSISDIKGISPSVVMHKILMEDTFSPSVEHQRRLNPAMK
        P+II++ LN+ +++KLLR+LR HK A+ W+I+DI+GISPS+ +H+ILME+   PS+EHQRRLNP MK
Subjt:  PVIISADLNKEEEEKLLRILRSHKSALGWSISDIKGISPSVVMHKILMEDTFSPSVEHQRRLNPAMK

A0A2P5F9V5 Uncharacterized protein1.8e-3173.91Show/hide
Query:  KPPILELKQLPTHIRYAFLGDLSTYPVIISADLNKEEEEKLLRILRSHKSALGWSISDIKGISPSVVMHKILMEDTFSPSVEHQRRLNPAMK
        KPP LELK L  H+RYAFLG+ ST PVIISA LN+E+ EKLLR+LR+HK+ALGW+I+DIKGISPS+ MHKILMED + PS+EHQRRLNP MK
Subjt:  KPPILELKQLPTHIRYAFLGDLSTYPVIISADLNKEEEEKLLRILRSHKSALGWSISDIKGISPSVVMHKILMEDTFSPSVEHQRRLNPAMK

A0A438CSP7 Gag-Pol polyprotein6.3e-3246.2Show/hide
Query:  MIDILNDVVDSFRELVLFVDPLATCMTNSMLDQLGKL--DHEVTYCNESLNQLP------KLQYEQFSQLHINK-VEEAKPPILELKQLPTHIRYAFLGD
        ++ +L+ VV           PL  C+ N     LG L  D ++  C  +L+ LP      KL++E+   +H+N    + +PP LELK LP+H+R+AFL D
Subjt:  MIDILNDVVDSFRELVLFVDPLATCMTNSMLDQLGKL--DHEVTYCNESLNQLP------KLQYEQFSQLHINK-VEEAKPPILELKQLPTHIRYAFLGD

Query:  LSTYPVIISADLNKEEEEKLLRILRSHKSALGWSISDIKGISPSVVMHKILMEDTFSPSVEHQRRLNPAMK
         S YP+IIS+ LN  EEEKLLR+LR HK  +GW+I DIKGISPS+ MHKIL E+++ P+V+ QRRLNP+M+
Subjt:  LSTYPVIISADLNKEEEEKLLRILRSHKSALGWSISDIKGISPSVVMHKILMEDTFSPSVEHQRRLNPAMK

A0A438G8J7 Integrase catalytic domain-containing protein9.7e-3347.65Show/hide
Query:  IDILNDVVDSFRELVLFVDPLATCMTNSMLDQLGKL--DHEVTYCNESLNQLP------KLQYEQFSQLHINK-VEEAKPPILELKQLPTHIRYAFLGDL
        I +L+ VV +         PL  C+ N     LG L  D ++  C  +L+ LP      KL++E+   +H+N    + +PP LELK LP+H+RYAFL D 
Subjt:  IDILNDVVDSFRELVLFVDPLATCMTNSMLDQLGKL--DHEVTYCNESLNQLP------KLQYEQFSQLHINK-VEEAKPPILELKQLPTHIRYAFLGDL

Query:  STYPVIISADLNKEEEEKLLRILRSHKSALGWSISDIKGISPSVVMHKILMEDTFSPSVEHQRRLNPAMK
        S YPVII++ LN  EEEKLLR+LR HK A+GW+I DIKGISPS+ MHK+L E+ + P+V+ QRRLNP+M+
Subjt:  STYPVIISADLNKEEEEKLLRILRSHKSALGWSISDIKGISPSVVMHKILMEDTFSPSVEHQRRLNPAMK

A0A6P5U2U9 uncharacterized protein LOC1107742421.8e-3151.66Show/hide
Query:  DPLATCMTNSM-LDQLGKLDHEVTYCNESLNQLPKLQYEQFSQLHINKVEEAKP-------PILELKQLPTHIRYAFLGDLSTYPVIISADLNKEEEEKL
        DPL  C+ +S+  +       E+ Y  E++   P  ++ +F +L    V  +KP       P L LK LP H+RYA+LG+  T PVII+A+L+K EEEKL
Subjt:  DPLATCMTNSM-LDQLGKLDHEVTYCNESLNQLPKLQYEQFSQLHINKVEEAKP-------PILELKQLPTHIRYAFLGDLSTYPVIISADLNKEEEEKL

Query:  LRILRSHKSALGWSISDIKGISPSVVMHKILMEDTFSPSVEHQRRLNPAMK
        LR+LR HK A+GW+I+DIKGISPS+ MH+ILMED F PSVEHQRRLNP MK
Subjt:  LRILRSHKSALGWSISDIKGISPSVVMHKILMEDTFSPSVEHQRRLNPAMK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTGATATTCTTAATGATGTTGTTGATTCATTTAGGGAACTAGTTTTATTTGTTGATCCCTTAGCGACTTGCATGACAAATTCAATGTTAGATCAGTTAGGAAAATT
GGATCATGAAGTTACTTACTGTAATGAATCACTGAATCAGTTGCCTAAACTTCAATATGAACAATTCTCACAACTGCATATCAATAAGGTTGAAGAAGCAAAACCTCCTA
TTCTAGAGTTGAAACAATTACCTACACACATTCGTTACGCTTTCTTAGGAGATTTATCTACTTATCCTGTGATTATTTCTGCTGATTTGAATAAAGAAGAGGAAGAAAAG
TTGTTGAGAATCCTGAGAAGTCATAAGTCTGCTTTAGGGTGGTCAATTAGTGATATTAAAGGTATCAGCCCATCTGTAGTAATGCATAAAATCTTAATGGAAGATACCTT
TAGTCCATCTGTTGAACACCAAAGGCGACTTAACCCAGCAATGAAGGGGTAG
mRNA sequenceShow/hide mRNA sequence
AGTATTAATTTGATGCCCTTATTTGTCTACAGGAAACTAGGTCTTGGGGAAGTGCAACCTACAACCATCTCCTTACAGTTGGTTGACCGTTCTATCAAATATCCCAAGGG
TATTGTAGAAGATGTGTTGGTCAAGGTTGAACAGTTCATTTTCCCTGCAGATTTTGTGGTCCTGGACATGGAGGAAGATTCTGAGGTCCCAATTATTTTGGGGTGACCTT
TTCTGGCCACTGGAAGAGCATTGATAGATGTGCAGGATCGTAAGTTAACTCTGAGGGTTGGTGAGGACAAGGTTATATGTGACATTTTTCGATCCTTGAAGTACCCTAGT
GAGGTAAGTACCTGTAACATGATTGATATTCTTAATGATGTTGTTGATTCATTTAGGGAACTAGTTTTATTTGTTGATCCCTTAGCGACTTGCATGACAAATTCAATGTT
AGATCAGTTAGGAAAATTGGATCATGAAGTTACTTACTGTAATGAATCACTGAATCAGTTGCCTAAACTTCAATATGAACAATTCTCACAACTGCATATCAATAAGGTTG
AAGAAGCAAAACCTCCTATTCTAGAGTTGAAACAATTACCTACACACATTCGTTACGCTTTCTTAGGAGATTTATCTACTTATCCTGTGATTATTTCTGCTGATTTGAAT
AAAGAAGAGGAAGAAAAGTTGTTGAGAATCCTGAGAAGTCATAAGTCTGCTTTAGGGTGGTCAATTAGTGATATTAAAGGTATCAGCCCATCTGTAGTAATGCATAAAAT
CTTAATGGAAGATACCTTTAGTCCATCTGTTGAACACCAAAGGCGACTTAACCCAGCAATGAAGGGGTAGTTAAAGCTGAGGTACTCAAAATGTTGAATGCAGGAATTAT
TTATGTTATATCTAACAGTTCTTGGTTGAGCCCTGTGCAGGTTGTTCCAAAGAAAGGGGGGATGACTGTCATAAAAAATGACAAGAATGAGTTCATATCCACCATGACAA
TCACTGGATGGCGTGTCTGTATCGATTACAGAAAGTTGAATAAAGCTACACAATGATCACTTTCCTCTTCCTTTTATTGATCAAATGCTTGATAGACTTGTTGGTTATCC
TTACTATTATTTTCTTGATGGCTATTCAGGTTATAACCAGA
Protein sequenceShow/hide protein sequence
MIDILNDVVDSFRELVLFVDPLATCMTNSMLDQLGKLDHEVTYCNESLNQLPKLQYEQFSQLHINKVEEAKPPILELKQLPTHIRYAFLGDLSTYPVIISADLNKEEEEK
LLRILRSHKSALGWSISDIKGISPSVVMHKILMEDTFSPSVEHQRRLNPAMKG