; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0007734 (gene) of Snake gourd v1 genome

Gene IDTan0007734
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionPMD domain-containing protein
Genome locationLG03:28204586..28207764
RNA-Seq ExpressionTan0007734
SyntenyTan0007734
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0055892.1 hypothetical protein E6C27_scaffold438G00100 [Cucumis melo var. makuwa]8.6e-0442.25Show/hide
Query:  RHRGIMVHFVEHISSRWKYLVILKDRAQPLKSGLSLLAEEPLTDPLSPPWPDLHSDFML-ELTTEKLLNSG
        RH G MV+F E   S  ++LVIL DR QP + GLSL+ E+P     +  WP L ++ +L  L+ E  L+ G
Subjt:  RHRGIMVHFVEHISSRWKYLVILKDRAQPLKSGLSLLAEEPLTDPLSPPWPDLHSDFML-ELTTEKLLNSG
TYK06200.1 hypothetical protein E5676_scaffold287G00580 [Cucumis melo var. makuwa]2.3e-0443.06Show/hide
Query:  RRHRGIMVHFVEHISSRWKYLVILKDRAQPLKSGLSLLAEEPLTDPLSPPWPDLHSDFML-ELTTEKLLNSG
        RRH G MV+F E   S  ++LVIL DR QP + GLSL+ E+P     +  WP L ++ +L  L+ E  L+ G
Subjt:  RRHRGIMVHFVEHISSRWKYLVILKDRAQPLKSGLSLLAEEPLTDPLSPPWPDLHSDFML-ELTTEKLLNSG
TrEMBL top hitse value%identityAlignment
A0A5A7UJ48 PMD domain-containing protein4.1e-0442.25Show/hide
Query:  RHRGIMVHFVEHISSRWKYLVILKDRAQPLKSGLSLLAEEPLTDPLSPPWPDLHSDFML-ELTTEKLLNSG
        RH G MV+F E   S  ++LVIL DR QP + GLSL+ E+P     +  WP L ++ +L  L+ E  L+ G
Subjt:  RHRGIMVHFVEHISSRWKYLVILKDRAQPLKSGLSLLAEEPLTDPLSPPWPDLHSDFML-ELTTEKLLNSG
A0A5D3C4E5 PMD domain-containing protein1.1e-0443.06Show/hide
Query:  RRHRGIMVHFVEHISSRWKYLVILKDRAQPLKSGLSLLAEEPLTDPLSPPWPDLHSDFML-ELTTEKLLNSG
        RRH G MV+F E   S  ++LVIL DR QP + GLSL+ E+P     +  WP L ++ +L  L+ E  L+ G
Subjt:  RRHRGIMVHFVEHISSRWKYLVILKDRAQPLKSGLSLLAEEPLTDPLSPPWPDLHSDFML-ELTTEKLLNSG
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTGTTCACAGAGAATTCAACCAACGAATGAGAATGATACACGTAGAGAAGAGCTTATTGTTCAACTTGAAGATAAGAATATTGTCGTTGGTTGTTCACCGACCCGA
GCGTCCCAACCATTGCCTTGTCGTAGCTGTGAATCGTCGCCACCGTGGAATCATGGTACACTTTGTCGAACATATCTCATCAAGGTGGAAATATCTCGTCATTTTGAAGG
ATAGAGCTCAACCTCTTAAGAGTGGGCTTAGCCTATTAGCTGAAGAACCACTTACCGACCCTCTTTCACCCCCATGGCCCGACTTGCATTCTGATTTTATGCTTGAACTT
ACAACAGAAAAACTCCTGAACTCTGGTGATAAAGTATGA
mRNA sequenceShow/hide mRNA sequence
ATGGGTGTTCACAGAGAATTCAACCAACGAATGAGAATGATACACGTAGAGAAGAGCTTATTGTTCAACTTGAAGATAAGAATATTGTCGTTGGTTGTTCACCGACCCGA
GCGTCCCAACCATTGCCTTGTCGTAGCTGTGAATCGTCGCCACCGTGGAATCATGGTACACTTTGTCGAACATATCTCATCAAGGTGGAAATATCTCGTCATTTTGAAGG
ATAGAGCTCAACCTCTTAAGAGTGGGCTTAGCCTATTAGCTGAAGAACCACTTACCGACCCTCTTTCACCCCCATGGCCCGACTTGCATTCTGATTTTATGCTTGAACTT
ACAACAGAAAAACTCCTGAACTCTGGTGATAAAGTATGA
Protein sequenceShow/hide protein sequence
MGVHREFNQRMRMIHVEKSLLFNLKIRILSLVVHRPERPNHCLVVAVNRRHRGIMVHFVEHISSRWKYLVILKDRAQPLKSGLSLLAEEPLTDPLSPPWPDLHSDFMLEL
TTEKLLNSGDKV