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Tan0007777 (gene) of Snake gourd v1 genome

Gene IDTan0007777
OrganismTrichosanthes anguina (Snake gourd v1)
Description30S ribosomal protein S16, chloroplastic
Genome locationLG01:81440875..81441945
RNA-Seq ExpressionTan0007777
SyntenyTan0007777
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0009507 - chloroplast (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR000307 - Ribosomal protein S16
IPR020592 - Ribosomal protein S16, conserved site
IPR023803 - Ribosomal protein S16 domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
QJS52337.1 ribosomal protein S16 [Indofevillea khasiana]1.7e-3595.24Show/hide
Query:  MVKLRLKRCGRK-KPVYRIIAIDVRSRREGRDLRKVGFYDAIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
        MVKLRLKRCGRK + VYRIIAIDVRSRREGRDLRKVGFYD IKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
Subjt:  MVKLRLKRCGRK-KPVYRIIAIDVRSRREGRDLRKVGFYDAIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
YP_009674373.1 ribosomal protein S16 [Siraitia grosvenorii]1.7e-3595.24Show/hide
Query:  MVKLRLKRCGRK-KPVYRIIAIDVRSRREGRDLRKVGFYDAIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
        MVKLRLKRCGRK + VYRIIAIDVRSRREGRDLRKVGFYD IKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
Subjt:  MVKLRLKRCGRK-KPVYRIIAIDVRSRREGRDLRKVGFYDAIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
YP_009753071.1 ribosomal protein S16 [Corallocarpus boehmii]1.7e-3595.24Show/hide
Query:  MVKLRLKRCGRK-KPVYRIIAIDVRSRREGRDLRKVGFYDAIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
        MVKLRLKRCGRK + VYRIIAIDVRSRREGRDLRKVGFYD IKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
Subjt:  MVKLRLKRCGRK-KPVYRIIAIDVRSRREGRDLRKVGFYDAIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
YP_009753856.1 ribosomal protein S16 [Trichosanthes lobata]4.4e-3696.43Show/hide
Query:  MVKLRLKRCGRK-KPVYRIIAIDVRSRREGRDLRKVGFYDAIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
        MVKLRLKRCGRK + VYRIIAIDVRSRREGRDLRKVGFYDAIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
Subjt:  MVKLRLKRCGRK-KPVYRIIAIDVRSRREGRDLRKVGFYDAIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
YP_010131076.1 ribosomal protein S16 [Benincasa hispida]1.7e-3595.24Show/hide
Query:  MVKLRLKRCGRK-KPVYRIIAIDVRSRREGRDLRKVGFYDAIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
        MVKLRLKRCGRK + VYRIIAIDVRSRREGRDLRKVGFYD IKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
Subjt:  MVKLRLKRCGRK-KPVYRIIAIDVRSRREGRDLRKVGFYDAIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
TrEMBL top hitse value%identityAlignment
A0A1V0IR61 Ribosomal protein S168.1e-3691.57Show/hide
Query:  MVKLRLKRCGRKKPVYRIIAIDVRSRREGRDLRKVGFYDAIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
        MVKLRLKRCGRK+ +YRI+AIDVR+RREGRDLRKVGFYD IKNQ YLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
Subjt:  MVKLRLKRCGRKKPVYRIIAIDVRSRREGRDLRKVGFYDAIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
A0A1X9Q1R7 30S ribosomal protein S16, chloroplastic8.1e-3695.24Show/hide
Query:  MVKLRLKRCGRK-KPVYRIIAIDVRSRREGRDLRKVGFYDAIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
        MVKLRLKRCGRK + VYRIIAIDVRSRREGRDLRKVGFYD IKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
Subjt:  MVKLRLKRCGRK-KPVYRIIAIDVRSRREGRDLRKVGFYDAIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
A0A218KG12 30S ribosomal protein S16, chloroplastic8.1e-3695.24Show/hide
Query:  MVKLRLKRCGRK-KPVYRIIAIDVRSRREGRDLRKVGFYDAIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
        MVKLRLKRCGRK + VYRIIAIDVRSRREGRDLRKVGFYD IKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
Subjt:  MVKLRLKRCGRK-KPVYRIIAIDVRSRREGRDLRKVGFYDAIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
A0A6H0ETM9 30S ribosomal protein S16, chloroplastic8.1e-3695.24Show/hide
Query:  MVKLRLKRCGRK-KPVYRIIAIDVRSRREGRDLRKVGFYDAIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
        MVKLRLKRCGRK + VYRIIAIDVRSRREGRDLRKVGFYD IKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
Subjt:  MVKLRLKRCGRK-KPVYRIIAIDVRSRREGRDLRKVGFYDAIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
A0A6H0EVV9 30S ribosomal protein S16, chloroplastic2.1e-3696.43Show/hide
Query:  MVKLRLKRCGRK-KPVYRIIAIDVRSRREGRDLRKVGFYDAIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
        MVKLRLKRCGRK + VYRIIAIDVRSRREGRDLRKVGFYDAIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
Subjt:  MVKLRLKRCGRK-KPVYRIIAIDVRSRREGRDLRKVGFYDAIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
SwissProt top hitse value%identityAlignment
A0ZZ17 30S ribosomal protein S16, chloroplastic2.3e-3589.29Show/hide
Query:  MVKLRLKRCGRK-KPVYRIIAIDVRSRREGRDLRKVGFYDAIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
        MVKLRLKRCGRK + VYRI+ IDVRSRREGRDLRKVGFYD I NQTYLNVPAILYFLEKGAQPT TVHDILKKAGVFTEL LNQ
Subjt:  MVKLRLKRCGRK-KPVYRIIAIDVRSRREGRDLRKVGFYDAIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
Q0G9N7 30S ribosomal protein S16, chloroplastic5.6e-3485.71Show/hide
Query:  MVKLRLKRCGRK-KPVYRIIAIDVRSRREGRDLRKVGFYDAIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
        MVKLRLKRCGRK + +YRI+AIDVRSRREGRDLRKVGFYD IKNQTY NVPAILYFLEKGAQPTGTVHDI KKA VF EL +NQ
Subjt:  MVKLRLKRCGRK-KPVYRIIAIDVRSRREGRDLRKVGFYDAIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
Q0ZJ38 30S ribosomal protein S16, chloroplastic1.5e-3488.1Show/hide
Query:  MVKLRLKRCGRK-KPVYRIIAIDVRSRREGRDLRKVGFYDAIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
        MVKLRLKRCGRK + VYRI+AID RSRREGRDLRKVGFYD IKNQTY NVPAILYFLEKGAQPTGTVHDI KKA VFTEL LNQ
Subjt:  MVKLRLKRCGRK-KPVYRIIAIDVRSRREGRDLRKVGFYDAIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
Q2L8Y7 30S ribosomal protein S16, chloroplastic7.8e-3690.48Show/hide
Query:  MVKLRLKRCGRK-KPVYRIIAIDVRSRREGRDLRKVGFYDAIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
        MVKLRLKRCGRK + VYRI+AIDVRSRREGRDLRKVGFYD I NQTYLNVPAILYFLEKGAQPT TVHDILKKAGVFTEL LNQ
Subjt:  MVKLRLKRCGRK-KPVYRIIAIDVRSRREGRDLRKVGFYDAIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
Q2QDA6 30S ribosomal protein S16, chloroplastic3.8e-3894.12Show/hide
Query:  MVKLRLKRCGRKK--PVYRIIAIDVRSRREGRDLRKVGFYDAIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
        MVKLRLKRCGRK+   VYRIIAIDVRSRREGRDLRKVGFYD IKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
Subjt:  MVKLRLKRCGRKK--PVYRIIAIDVRSRREGRDLRKVGFYDAIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
Arabidopsis top hitse value%identityAlignment
AT4G34620.1 small subunit ribosomal protein 162.6e-1041.25Show/hide
Query:  VKLRLKRCGRK-KPVYRIIAIDVRSRREGRDLRKVGFYDAIK-----NQTYLNVPAILYFLEKGAQPTGTVHDILKKAGV
        VK+RL R G K +P YR++  D +SRR+G+ +  +GFYD ++     ++  L    I Y+L  GAQPT TV  +L +AG+
Subjt:  VKLRLKRCGRK-KPVYRIIAIDVRSRREGRDLRKVGFYDAIK-----NQTYLNVPAILYFLEKGAQPTGTVHDILKKAGV
AT5G56940.1 Ribosomal protein S16 family protein2.3e-0633.33Show/hide
Query:  MVKLRLKRCG-RKKPVYRIIAIDVRSRREGRDLRKVGFYDAIKNQ-----TYLNVPAILYFLEKGAQPTGTVHDILKKAGV
        +V++RL R G + +P +R++A D RS R+G+ L  +G+++ +  Q       L    I Y+L  GAQP+  V  +L ++G+
Subjt:  MVKLRLKRCG-RKKPVYRIIAIDVRSRREGRDLRKVGFYDAIKNQ-----TYLNVPAILYFLEKGAQPTGTVHDILKKAGV
ATCG00050.1 ribosomal protein S162.1e-2878.48Show/hide
Query:  MVKLRLKRCGRK-KPVYRIIAIDVRSRREGRDLRKVGFYDAIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTE
        MVKLRLKRCGRK + VYRI+AIDVR RREGRDL KVGFYD I NQT+LN+ AIL FL+KGAQPT T HDI KKAG+FTE
Subjt:  MVKLRLKRCGRK-KPVYRIIAIDVRSRREGRDLRKVGFYDAIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTE

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTAAAACTTCGTTTAAAACGATGTGGTAGAAAGAAACCCGTTTATCGAATCATTGCAATTGATGTTCGATCCCGAAGAGAAGGAAGAGATCTTCGTAAAGTGGGTTT
TTATGATGCGATAAAGAATCAAACCTATTTAAATGTTCCTGCTATTCTATATTTCCTTGAAAAGGGTGCTCAACCTACAGGAACTGTTCATGATATTTTAAAGAAGGCTG
GGGTTTTTACGGAACTTCACCTTAATCAATAA
mRNA sequenceShow/hide mRNA sequence
ATGGTAAAACTTCGTTTAAAACGATGTGGTAGAAAGAAACCCGTTTATCGAATCATTGCAATTGATGTTCGATCCCGAAGAGAAGGAAGAGATCTTCGTAAAGTGGGTTT
TTATGATGCGATAAAGAATCAAACCTATTTAAATGTTCCTGCTATTCTATATTTCCTTGAAAAGGGTGCTCAACCTACAGGAACTGTTCATGATATTTTAAAGAAGGCTG
GGGTTTTTACGGAACTTCACCTTAATCAATAA
Protein sequenceShow/hide protein sequence
MVKLRLKRCGRKKPVYRIIAIDVRSRREGRDLRKVGFYDAIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ