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Tan0007870 (gene) of Snake gourd v1 genome

Gene IDTan0007870
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRetrotransposable element Tf2
Genome locationLG05:47593696..47595981
RNA-Seq ExpressionTan0007870
SyntenyTan0007870
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025901.1 hypothetical protein E6C27_scaffold34G001890 [Cucumis melo var. makuwa]1.1e-1645.53Show/hide
Query:  PMRPSVSPTTPSSSQQGS---SIPTTFYKFSHAGIKEVKQWFADNGYLQDLSKKKNAEFLNSKSKLLAALAQTTTETDLQKILNQVTSIASSSSPQNSEV
        P   S S  +P S+ Q +      T  Y F HA IK +K+WF +NGYLQD+ + KN +FLN KSKLLA LAQ TT+ D Q++L    + ++SS   +S +
Subjt:  PMRPSVSPTTPSSSQQGS---SIPTTFYKFSHAGIKEVKQWFADNGYLQDLSKKKNAEFLNSKSKLLAALAQTTTETDLQKILNQVTSIASSSSPQNSEV

Query:  EEDD-----EYDINDPFLDSQPI
        +ED+     EYD+++PFLDSQP+
Subjt:  EEDD-----EYDINDPFLDSQPI

KAA0034823.1 hypothetical protein E6C27_scaffold213G00570 [Cucumis melo var. makuwa]2.4e-1652.08Show/hide
Query:  YKFSHAGIKEVKQWFADNGYLQDLSKKKNAEFLNSKSKLLAALAQTTTETDLQKILNQVTSIASSSSPQNSEVEEDD-----EYDINDPFLDSQPI
        Y F HA IK +K+WFA+N YLQD+ ++KN EFLN KSKLL ALAQ TT+ D Q++L+   + +SSS   +S ++ED+     EYD++D  LDSQP+
Subjt:  YKFSHAGIKEVKQWFADNGYLQDLSKKKNAEFLNSKSKLLAALAQTTTETDLQKILNQVTSIASSSSPQNSEVEEDD-----EYDINDPFLDSQPI

KAA0049709.1 hypothetical protein E6C27_scaffold76G00530 [Cucumis melo var. makuwa]5.6e-1844.38Show/hide
Query:  MSADQYAMDLGFTQVNRPRTRSASIQIRDSMESLTPPPRPSASLIRPT-AVTPMRPSVSPTTPSSSQQGSSIPTTFYKFSHAGIKEVKQWFADNGYLQDL
        MSADQYAMDLGFT V R R+RS+SI+I    ES T PP+PS +LIRP+  V  MR   SP +PSS+++ S+ PTT                    Y Q +
Subjt:  MSADQYAMDLGFTQVNRPRTRSASIQIRDSMESLTPPPRPSASLIRPT-AVTPMRPSVSPTTPSSSQQGSSIPTTFYKFSHAGIKEVKQWFADNGYLQDL

Query:  SKKKNAEFLNSKSKLLAALAQTTTETDLQKILNQVTSIASSSSPQNSEVEEDD-----EYDINDPFLDS
        +  K       +SKLLAALAQ TT+ D Q++L+   + +SSS   +S ++ED+     EYD++DP+LDS
Subjt:  SKKKNAEFLNSKSKLLAALAQTTTETDLQKILNQVTSIASSSSPQNSEVEEDD-----EYDINDPFLDS

TYJ98361.1 hypothetical protein E5676_scaffold232G00950 [Cucumis melo var. makuwa]8.9e-2443.98Show/hide
Query:  MSADQYAMDLGFTQVNRPRTRSASIQIRDSMESLTPPPRPSASLIRPTA-VTPMRPSVSPTTPSSSQQGSSIPTTFYKFSHAGIK-----EVKQWF----
        MS DQYAMDLG+T V + R++S+ I IR  MES T PPRPS +LI P   V  MR S S   PSS+++ S++PTT+ +      +     E+K +F    
Subjt:  MSADQYAMDLGFTQVNRPRTRSASIQIRDSMESLTPPPRPSASLIRPTA-VTPMRPSVSPTTPSSSQQGSSIPTTFYKFSHAGIK-----EVKQWF----

Query:  -----------ADNGYLQDLSKKKNAEFLNSKSKLLAALAQTTTETDLQKILNQVTSIASSSSPQNSEVEEDD-----EYDINDPFLDSQP
                     NG LQD+ ++KNA+FLN K K LAAL Q T + D Q++L+   + +SSS P  S ++ED+     EYD++DPFLDSQP
Subjt:  -----------ADNGYLQDLSKKKNAEFLNSKSKLLAALAQTTTETDLQKILNQVTSIASSSSPQNSEVEEDD-----EYDINDPFLDSQP

TYK02422.1 hypothetical protein E5676_scaffold1738G00210 [Cucumis melo var. makuwa]1.2e-1240.12Show/hide
Query:  MSADQYAMDLGFTQVNRPRTRSASIQIRDSMESLTPPPRPSASLIRPTA-VTPMRPSVSPTTPSSSQQGSSIPTTFYKFSHAGIKEVKQWFADNGYLQDL
        MSADQYAMDLGFT V R R+RS+ IQI    ES T PPRPSA+LIRP++    MRP   P +PSS+ + S+ PTT+            Q    N    ++
Subjt:  MSADQYAMDLGFTQVNRPRTRSASIQIRDSMESLTPPPRPSASLIRPTA-VTPMRPSVSPTTPSSSQQGSSIPTTFYKFSHAGIKEVKQWFADNGYLQDL

Query:  SKKKNAEFLNSKSKLLAALAQTTTETDLQKILNQVTSIASSSSPQNSEVEEDDEYDINDPFLDSQPI
                +N+  K+                    +S +SSSS Q  E + D EYD++DPFLDS+P+
Subjt:  SKKKNAEFLNSKSKLLAALAQTTTETDLQKILNQVTSIASSSSPQNSEVEEDDEYDINDPFLDSQPI

TrEMBL top hitse value%identityAlignment
A0A5A7SNT5 Uncharacterized protein5.1e-1745.53Show/hide
Query:  PMRPSVSPTTPSSSQQGS---SIPTTFYKFSHAGIKEVKQWFADNGYLQDLSKKKNAEFLNSKSKLLAALAQTTTETDLQKILNQVTSIASSSSPQNSEV
        P   S S  +P S+ Q +      T  Y F HA IK +K+WF +NGYLQD+ + KN +FLN KSKLLA LAQ TT+ D Q++L    + ++SS   +S +
Subjt:  PMRPSVSPTTPSSSQQGS---SIPTTFYKFSHAGIKEVKQWFADNGYLQDLSKKKNAEFLNSKSKLLAALAQTTTETDLQKILNQVTSIASSSSPQNSEV

Query:  EEDD-----EYDINDPFLDSQPI
        +ED+     EYD+++PFLDSQP+
Subjt:  EEDD-----EYDINDPFLDSQPI

A0A5A7SWC0 Uncharacterized protein1.1e-1652.08Show/hide
Query:  YKFSHAGIKEVKQWFADNGYLQDLSKKKNAEFLNSKSKLLAALAQTTTETDLQKILNQVTSIASSSSPQNSEVEEDD-----EYDINDPFLDSQPI
        Y F HA IK +K+WFA+N YLQD+ ++KN EFLN KSKLL ALAQ TT+ D Q++L+   + +SSS   +S ++ED+     EYD++D  LDSQP+
Subjt:  YKFSHAGIKEVKQWFADNGYLQDLSKKKNAEFLNSKSKLLAALAQTTTETDLQKILNQVTSIASSSSPQNSEVEEDD-----EYDINDPFLDSQPI

A0A5A7U8A0 Uncharacterized protein2.7e-1844.38Show/hide
Query:  MSADQYAMDLGFTQVNRPRTRSASIQIRDSMESLTPPPRPSASLIRPT-AVTPMRPSVSPTTPSSSQQGSSIPTTFYKFSHAGIKEVKQWFADNGYLQDL
        MSADQYAMDLGFT V R R+RS+SI+I    ES T PP+PS +LIRP+  V  MR   SP +PSS+++ S+ PTT                    Y Q +
Subjt:  MSADQYAMDLGFTQVNRPRTRSASIQIRDSMESLTPPPRPSASLIRPT-AVTPMRPSVSPTTPSSSQQGSSIPTTFYKFSHAGIKEVKQWFADNGYLQDL

Query:  SKKKNAEFLNSKSKLLAALAQTTTETDLQKILNQVTSIASSSSPQNSEVEEDD-----EYDINDPFLDS
        +  K       +SKLLAALAQ TT+ D Q++L+   + +SSS   +S ++ED+     EYD++DP+LDS
Subjt:  SKKKNAEFLNSKSKLLAALAQTTTETDLQKILNQVTSIASSSSPQNSEVEEDD-----EYDINDPFLDS

A0A5D3BI61 Uncharacterized protein4.3e-2443.98Show/hide
Query:  MSADQYAMDLGFTQVNRPRTRSASIQIRDSMESLTPPPRPSASLIRPTA-VTPMRPSVSPTTPSSSQQGSSIPTTFYKFSHAGIK-----EVKQWF----
        MS DQYAMDLG+T V + R++S+ I IR  MES T PPRPS +LI P   V  MR S S   PSS+++ S++PTT+ +      +     E+K +F    
Subjt:  MSADQYAMDLGFTQVNRPRTRSASIQIRDSMESLTPPPRPSASLIRPTA-VTPMRPSVSPTTPSSSQQGSSIPTTFYKFSHAGIK-----EVKQWF----

Query:  -----------ADNGYLQDLSKKKNAEFLNSKSKLLAALAQTTTETDLQKILNQVTSIASSSSPQNSEVEEDD-----EYDINDPFLDSQP
                     NG LQD+ ++KNA+FLN K K LAAL Q T + D Q++L+   + +SSS P  S ++ED+     EYD++DPFLDSQP
Subjt:  -----------ADNGYLQDLSKKKNAEFLNSKSKLLAALAQTTTETDLQKILNQVTSIASSSSPQNSEVEEDD-----EYDINDPFLDSQP

A0A5D3BUE2 Uncharacterized protein5.9e-1340.12Show/hide
Query:  MSADQYAMDLGFTQVNRPRTRSASIQIRDSMESLTPPPRPSASLIRPTA-VTPMRPSVSPTTPSSSQQGSSIPTTFYKFSHAGIKEVKQWFADNGYLQDL
        MSADQYAMDLGFT V R R+RS+ IQI    ES T PPRPSA+LIRP++    MRP   P +PSS+ + S+ PTT+            Q    N    ++
Subjt:  MSADQYAMDLGFTQVNRPRTRSASIQIRDSMESLTPPPRPSASLIRPTA-VTPMRPSVSPTTPSSSQQGSSIPTTFYKFSHAGIKEVKQWFADNGYLQDL

Query:  SKKKNAEFLNSKSKLLAALAQTTTETDLQKILNQVTSIASSSSPQNSEVEEDDEYDINDPFLDSQPI
                +N+  K+                    +S +SSSS Q  E + D EYD++DPFLDS+P+
Subjt:  SKKKNAEFLNSKSKLLAALAQTTTETDLQKILNQVTSIASSSSPQNSEVEEDDEYDINDPFLDSQPI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCGCCGATCAATACGCAATGGATCTGGGTTTCACTCAAGTGAATCGCCCAAGAACCAGAAGCGCATCGATTCAAATAAGAGATTCAATGGAGTCATTAACTCCACC
ACCGAGGCCATCAGCCTCCCTCATACGGCCTACTGCCGTTACACCAATGAGACCTTCCGTCTCACCTACTACTCCGTCTTCATCTCAACAGGGATCTTCAATTCCTACAA
CCTTTTACAAATTTTCTCACGCAGGAATCAAAGAAGTGAAGCAATGGTTTGCCGATAATGGCTACCTCCAAGACCTGTCAAAGAAGAAAAATGCAGAGTTCCTTAATTCC
AAATCAAAGCTGCTAGCTGCCTTAGCACAAACAACAACAGAGACAGATTTACAAAAAATTTTGAATCAAGTTACTTCAATAGCATCTTCGTCTTCTCCACAAAACTCTGA
AGTGGAAGAAGATGATGAATATGATATCAATGATCCGTTTTTAGATTCCCAACCAATTCGACAGCTGGTTGGTAAAGGTTGTGTTCCCGACAGCAAGTGTAAGTCCGTTG
GTAAGCTCCTGTTCCCCAGTAACTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGCGCCGATCAATACGCAATGGATCTGGGTTTCACTCAAGTGAATCGCCCAAGAACCAGAAGCGCATCGATTCAAATAAGAGATTCAATGGAGTCATTAACTCCACC
ACCGAGGCCATCAGCCTCCCTCATACGGCCTACTGCCGTTACACCAATGAGACCTTCCGTCTCACCTACTACTCCGTCTTCATCTCAACAGGGATCTTCAATTCCTACAA
CCTTTTACAAATTTTCTCACGCAGGAATCAAAGAAGTGAAGCAATGGTTTGCCGATAATGGCTACCTCCAAGACCTGTCAAAGAAGAAAAATGCAGAGTTCCTTAATTCC
AAATCAAAGCTGCTAGCTGCCTTAGCACAAACAACAACAGAGACAGATTTACAAAAAATTTTGAATCAAGTTACTTCAATAGCATCTTCGTCTTCTCCACAAAACTCTGA
AGTGGAAGAAGATGATGAATATGATATCAATGATCCGTTTTTAGATTCCCAACCAATTCGACAGCTGGTTGGTAAAGGTTGTGTTCCCGACAGCAAGTGTAAGTCCGTTG
GTAAGCTCCTGTTCCCCAGTAACTAG
Protein sequenceShow/hide protein sequence
MSADQYAMDLGFTQVNRPRTRSASIQIRDSMESLTPPPRPSASLIRPTAVTPMRPSVSPTTPSSSQQGSSIPTTFYKFSHAGIKEVKQWFADNGYLQDLSKKKNAEFLNS
KSKLLAALAQTTTETDLQKILNQVTSIASSSSPQNSEVEEDDEYDINDPFLDSQPIRQLVGKGCVPDSKCKSVGKLLFPSN