CuGenDBv2

Gene ID	Tan0007902
Organism	Trichosanthes anguina (Snake gourd v1)
Description	30S ribosomal protein S15, chloroplastic
Genome location	LG01:98863673..98863945
RNA-Seq Expression	Tan0007902
Synteny	Tan0007902
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005840 - ribosome (cellular component) GO:0009507 - chloroplast (cellular component) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR000589 - Ribosomal protein S15 IPR005290 - Ribosomal protein S15, bacterial-type IPR009068 - S15/NS1, RNA-binding

Homology

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GenBank top hits

e value

%identity

Alignment

YP_004841842.1 ribosomal protein S15 [Cucumis melo subsp. melo]

1.3e-36

96.67

Show/hide

Query:  MVKNSFSSVISQEEKKENGGSVEFQVVNFTNKIRRLTSHLELHKKDYLSQRGLRKILGKRQRLLSYLSKKNQMRYKELINQLNIRESKTQ
        MVKNSFSSVISQEEKKENGGSVEFQVV+FTNKIRRLTSHLELHKKDYLSQRGLRKILGKRQRLLSYLSKKN+MRYKELINQL+IRESKTQ
Subjt:  MVKNSFSSVISQEEKKENGGSVEFQVVNFTNKIRRLTSHLELHKKDYLSQRGLRKILGKRQRLLSYLSKKNQMRYKELINQLNIRESKTQ

YP_009560892.1 ribosomal protein S15 [Trichosanthes kirilowii]

3.3e-37

97.78

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Query:  MVKNSFSSVISQEEKKENGGSVEFQVVNFTNKIRRLTSHLELHKKDYLSQRGLRKILGKRQRLLSYLSKKNQMRYKELINQLNIRESKTQ
        MVKNSFSSVISQEEKKENGGSVEFQVVNFTNKIRRLTSHLELHKKDYLSQRGLRKILGKRQRLLSYLSKKN+MRYKELINQL+IRESKTQ
Subjt:  MVKNSFSSVISQEEKKENGGSVEFQVVNFTNKIRRLTSHLELHKKDYLSQRGLRKILGKRQRLLSYLSKKNQMRYKELINQLNIRESKTQ

YP_009752543.1 ribosomal protein S15 [Trichosanthes tubiflora]

3.3e-37

97.78

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Query:  MVKNSFSSVISQEEKKENGGSVEFQVVNFTNKIRRLTSHLELHKKDYLSQRGLRKILGKRQRLLSYLSKKNQMRYKELINQLNIRESKTQ
        MVKNSFSSVISQEEKKENGGSVEFQVVNFT+KIRRLTSHLELHKKDYLSQRGLRKILGKRQRLLSYLSKKN+MRYKELINQLNIRESKTQ
Subjt:  MVKNSFSSVISQEEKKENGGSVEFQVVNFTNKIRRLTSHLELHKKDYLSQRGLRKILGKRQRLLSYLSKKNQMRYKELINQLNIRESKTQ

YP_009753921.1 ribosomal protein S15 [Trichosanthes lobata]

3.0e-38

100

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Query:  MVKNSFSSVISQEEKKENGGSVEFQVVNFTNKIRRLTSHLELHKKDYLSQRGLRKILGKRQRLLSYLSKKNQMRYKELINQLNIRESKTQ
        MVKNSFSSVISQEEKKENGGSVEFQVVNFTNKIRRLTSHLELHKKDYLSQRGLRKILGKRQRLLSYLSKKNQMRYKELINQLNIRESKTQ
Subjt:  MVKNSFSSVISQEEKKENGGSVEFQVVNFTNKIRRLTSHLELHKKDYLSQRGLRKILGKRQRLLSYLSKKNQMRYKELINQLNIRESKTQ

YP_010131141.1 ribosomal protein S15 [Benincasa hispida]

2.5e-37

97.78

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Query:  MVKNSFSSVISQEEKKENGGSVEFQVVNFTNKIRRLTSHLELHKKDYLSQRGLRKILGKRQRLLSYLSKKNQMRYKELINQLNIRESKTQ
        MVKNSFSSVISQEEKKENGGSVEFQVVNFTNKIRRLTSHLELHKKDYLSQRGLRKILGKRQRLLSYLSKKNQMRYKELINQL+IRE+KTQ
Subjt:  MVKNSFSSVISQEEKKENGGSVEFQVVNFTNKIRRLTSHLELHKKDYLSQRGLRKILGKRQRLLSYLSKKNQMRYKELINQLNIRESKTQ

TrEMBL top hits

e value

%identity

Alignment

A0A410HFE2 30S ribosomal protein S15, chloroplastic

1.6e-37

97.78

Show/hide

Query:  MVKNSFSSVISQEEKKENGGSVEFQVVNFTNKIRRLTSHLELHKKDYLSQRGLRKILGKRQRLLSYLSKKNQMRYKELINQLNIRESKTQ
        MVKNSFSSVISQEEKKENGGSVEFQVVNFTNKIRRLTSHLELHKKDYLSQRGLRKILGKRQRLLSYLSKKN+MRYKELINQL+IRESKTQ
Subjt:  MVKNSFSSVISQEEKKENGGSVEFQVVNFTNKIRRLTSHLELHKKDYLSQRGLRKILGKRQRLLSYLSKKNQMRYKELINQLNIRESKTQ

A0A6H0ETT2 30S ribosomal protein S15, chloroplastic

1.6e-37

97.78

Show/hide

Query:  MVKNSFSSVISQEEKKENGGSVEFQVVNFTNKIRRLTSHLELHKKDYLSQRGLRKILGKRQRLLSYLSKKNQMRYKELINQLNIRESKTQ
        MVKNSFSSVISQEEKKENGGSVEFQVVNFT+KIRRLTSHLELHKKDYLSQRGLRKILGKRQRLLSYLSKKN+MRYKELINQLNIRESKTQ
Subjt:  MVKNSFSSVISQEEKKENGGSVEFQVVNFTNKIRRLTSHLELHKKDYLSQRGLRKILGKRQRLLSYLSKKNQMRYKELINQLNIRESKTQ

A0A6H0EWE7 30S ribosomal protein S15, chloroplastic

1.5e-38

100

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Query:  MVKNSFSSVISQEEKKENGGSVEFQVVNFTNKIRRLTSHLELHKKDYLSQRGLRKILGKRQRLLSYLSKKNQMRYKELINQLNIRESKTQ
        MVKNSFSSVISQEEKKENGGSVEFQVVNFTNKIRRLTSHLELHKKDYLSQRGLRKILGKRQRLLSYLSKKNQMRYKELINQLNIRESKTQ
Subjt:  MVKNSFSSVISQEEKKENGGSVEFQVVNFTNKIRRLTSHLELHKKDYLSQRGLRKILGKRQRLLSYLSKKNQMRYKELINQLNIRESKTQ

A0A6M3RUA6 30S ribosomal protein S15, chloroplastic

1.6e-37

97.78

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Query:  MVKNSFSSVISQEEKKENGGSVEFQVVNFTNKIRRLTSHLELHKKDYLSQRGLRKILGKRQRLLSYLSKKNQMRYKELINQLNIRESKTQ
        MVKNSFSSVISQEEKKENGGSVEFQVVNFTNKIRRLTSHLELHKKDYLSQRGLRKILGKRQRLLSYLSKKN+MRYKELINQL+IRESKTQ
Subjt:  MVKNSFSSVISQEEKKENGGSVEFQVVNFTNKIRRLTSHLELHKKDYLSQRGLRKILGKRQRLLSYLSKKNQMRYKELINQLNIRESKTQ

A0A7T3QNM4 Ribosomal protein S15

1.2e-37

97.78

Show/hide

Query:  MVKNSFSSVISQEEKKENGGSVEFQVVNFTNKIRRLTSHLELHKKDYLSQRGLRKILGKRQRLLSYLSKKNQMRYKELINQLNIRESKTQ
        MVKNSFSSVISQEEKKENGGSVEFQVVNFTNKIRRLTSHLELHKKDYLSQRGLRKILGKRQRLLSYLSKKNQMRYKELINQL+IRE+KTQ
Subjt:  MVKNSFSSVISQEEKKENGGSVEFQVVNFTNKIRRLTSHLELHKKDYLSQRGLRKILGKRQRLLSYLSKKNQMRYKELINQLNIRESKTQ

SwissProt top hits

e value

%identity

Alignment

A4GYX3 30S ribosomal protein S15, chloroplastic

9.4e-35

85.56

Show/hide

Query:  MVKNSFSSVISQEEKKENGGSVEFQVVNFTNKIRRLTSHLELHKKDYLSQRGLRKILGKRQRLLSYLSKKNQMRYKELINQLNIRESKTQ
        MVK+SF S+ISQE+KKEN GSVEFQ+V+FTNKIRRLTSHLELH+KDYLSQRGLRKILGKRQRLLSYL+KKN +RYKELI+QLNIRESKT+
Subjt:  MVKNSFSSVISQEEKKENGGSVEFQVVNFTNKIRRLTSHLELHKKDYLSQRGLRKILGKRQRLLSYLSKKNQMRYKELINQLNIRESKTQ

B1NWK6 30S ribosomal protein S15, chloroplastic

6.1e-34

84.44

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Query:  MVKNSFSSVISQEEKKENGGSVEFQVVNFTNKIRRLTSHLELHKKDYLSQRGLRKILGKRQRLLSYLSKKNQMRYKELINQLNIRESKTQ
        MVKNSF SVISQEEK EN GSVEFQ+V+FTNKIRRLTSH ELH+KDYLSQRGLRKILGKRQRLLSYL+KKN++RYKELI++L+IRESKT+
Subjt:  MVKNSFSSVISQEEKKENGGSVEFQVVNFTNKIRRLTSHLELHKKDYLSQRGLRKILGKRQRLLSYLSKKNQMRYKELINQLNIRESKTQ

Q14FA1 30S ribosomal protein S15, chloroplastic

9.4e-35

85.56

Show/hide

Query:  MVKNSFSSVISQEEKKENGGSVEFQVVNFTNKIRRLTSHLELHKKDYLSQRGLRKILGKRQRLLSYLSKKNQMRYKELINQLNIRESKTQ
        MVK+SF S+ISQE+KKEN GSVEFQ+V+FTNKIRRLTSHLELH+KDYLSQRGLRKILGKRQRLLSYL+KKN +RYKELI+QLNIRESKT+
Subjt:  MVKNSFSSVISQEEKKENGGSVEFQVVNFTNKIRRLTSHLELHKKDYLSQRGLRKILGKRQRLLSYLSKKNQMRYKELINQLNIRESKTQ

Q49KU1 30S ribosomal protein S15, chloroplastic

2.3e-33

85.71

Show/hide

Query:  MVKNSFSSVISQ-EEKKENGGSVEFQVVNFTNKIRRLTSHLELHKKDYLSQRGLRKILGKRQRLLSYLSKKNQMRYKELINQLNIRESKTQ
        MVKNSF SVISQ EEK+EN GS+EFQV  FTNKIRRLTSHLELH+KDYLSQRGLRKILGKRQRLLSYLSKKN++RYKELI+QL+IRESKT+
Subjt:  MVKNSFSSVISQ-EEKKENGGSVEFQVVNFTNKIRRLTSHLELHKKDYLSQRGLRKILGKRQRLLSYLSKKNQMRYKELINQLNIRESKTQ

Q4VZL1 30S ribosomal protein S15, chloroplastic

1.7e-39

96.67

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Query:  MVKNSFSSVISQEEKKENGGSVEFQVVNFTNKIRRLTSHLELHKKDYLSQRGLRKILGKRQRLLSYLSKKNQMRYKELINQLNIRESKTQ
        MVKNSFSSVISQEEKKENGGSVEFQVV+FTNKIRRLTSHLELHKKDYLSQRGLRKILGKRQRLLSYLSKKN+MRYKELINQL+IRESKTQ
Subjt:  MVKNSFSSVISQEEKKENGGSVEFQVVNFTNKIRRLTSHLELHKKDYLSQRGLRKILGKRQRLLSYLSKKNQMRYKELINQLNIRESKTQ

Arabidopsis top hits

e value

%identity

Alignment

AT1G15810.1 S15/NS1, RNA-binding protein

1.8e-04

38.24

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Query:  GSVEFQVVNFTNKIRRLTSHLELHKKDYLSQRGLRKILGKRQRLLSYLSKKNQMRYKELINQLNIRES
        GS   QV   T KI+ L+S   LHKKD  S++GL  ++ KR++LL YL + +   Y  ++++L++R++
Subjt:  GSVEFQVVNFTNKIRRLTSHLELHKKDYLSQRGLRKILGKRQRLLSYLSKKNQMRYKELINQLNIRES

ATCG01120.1 chloroplast ribosomal protein S15

2.5e-30

77.78

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Query:  MVKNSFSSVISQEEKKENGGSVEFQVVNFTNKIRRLTSHLELHKKDYLSQRGLRKILGKRQRLLSYLSKKNQMRYKELINQLNIRESKTQ
        M+KN   S   +E+K+E+ GSVEFQV +FTNKIRRLTSHLELH+KDYLSQRGLRKILGKRQRLL+YLSKKN++RYKELINQLNIRE KT+
Subjt:  MVKNSFSSVISQEEKKENGGSVEFQVVNFTNKIRRLTSHLELHKKDYLSQRGLRKILGKRQRLLSYLSKKNQMRYKELINQLNIRESKTQ

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGTAAAAAATTCATTCAGCTCAGTTATTTCGCAAGAAGAAAAAAAAGAAAATGGAGGATCTGTTGAATTTCAAGTAGTCAATTTCACCAATAAGATACGAAGACTTAC
TTCACATTTGGAATTGCACAAAAAAGACTATTTATCTCAAAGAGGTCTACGTAAAATTCTCGGAAAACGCCAACGATTACTTTCTTATTTATCAAAGAAAAATCAAATGC
GTTATAAAGAATTAATTAATCAATTGAATATTCGGGAGTCAAAAACTCAGTAA

mRNA sequence

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Protein sequence

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MVKNSFSSVISQEEKKENGGSVEFQVVNFTNKIRRLTSHLELHKKDYLSQRGLRKILGKRQRLLSYLSKKNQMRYKELINQLNIRESKTQ

Tan0007902 (gene) of Snake gourd v1 genome